Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,188,237 T→C V114A (GTG→GCG)  b3047 → putative membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,188,2370TC99.7% 2201.4 / ‑5.9 685V114A (GTG→GCG) b3047putative membrane protein
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (353/330);  total (354/331)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 706 total aligned reads displayed.

AATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCA  >  NC_000913/3188146‑3188326
                                                                                           |                                                                                         
 aTCCCAGTGAGCAAATTCAAATAAGAATAATAACTCAGGAAAAAAATGATCAACTTCCTCAAAAAAAAGAAAAGACCTTCTTATTTAACgcgc                                                                                         >  1:581296/1‑93 (MQ=255)
  tCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAAcgcgcg                                                                                        >  1:7836485/1‑93 (MQ=255)
  tCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAAcgcgcg                                                                                        >  1:2006900/1‑93 (MQ=255)
     cAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCgaga                                                                                     >  1:8306949/1‑93 (MQ=255)
     cAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCgaga                                                                                     >  2:3071778/1‑93 (MQ=255)
     cAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCgaga                                                                                     <  1:3290760/93‑1 (MQ=255)
     cAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCgaga                                                                                     >  2:6357313/1‑93 (MQ=255)
       gTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGaaa                                                                                   <  2:3924108/93‑1 (MQ=255)
       gTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGaaa                                                                                   >  2:1406312/1‑93 (MQ=255)
       gTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGaaa                                                                                   <  2:3366729/93‑1 (MQ=255)
       gTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGaaa                                                                                   <  2:6657344/93‑1 (MQ=255)
       gTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGaaa                                                                                   <  1:1342928/93‑1 (MQ=255)
       gTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGaaa                                                                                   >  2:8514505/1‑93 (MQ=255)
        tGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAAt                                                                                  <  1:9316750/93‑1 (MQ=255)
        tGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAAt                                                                                  >  2:8433691/1‑93 (MQ=255)
         gAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATa                                                                                 <  2:6881327/93‑1 (MQ=255)
         gAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATa                                                                                 <  2:7369245/93‑1 (MQ=255)
           gCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATAcc                                                                               <  2:4958510/93‑1 (MQ=255)
            cAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCg                                                                              <  1:342229/93‑1 (MQ=255)
             aaaTTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGc                                                                             <  1:4185792/93‑1 (MQ=255)
              aaTTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGcc                                                                            >  1:5628740/1‑93 (MQ=255)
              aaTTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGcc                                                                            >  2:2845116/1‑93 (MQ=255)
               aTTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGccc                                                                           >  1:2926931/1‑93 (MQ=255)
                ttCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCa                                                                          >  2:8773829/1‑93 (MQ=255)
                ttCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTACTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCa                                                                          >  1:6485025/1‑93 (MQ=255)
                atCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCa                                                                          <  1:9940773/92‑1 (MQ=255)
                  cAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCaaa                                                                        <  2:4101568/93‑1 (MQ=255)
                  cAAATAAGAATGATAACGCAGGAAAAAATTGCTCAACTTACTAAAGACAGAGATACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCaaa                                                                        >  2:1064406/1‑93 (MQ=255)
                    aaTAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAAc                                                                      <  2:3204246/93‑1 (MQ=255)
                     aTAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACa                                                                     <  2:3664055/93‑1 (MQ=255)
                     aTAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACa                                                                     <  1:7969636/93‑1 (MQ=255)
                       aaGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGa                                                                   >  1:8491927/1‑93 (MQ=255)
                        aGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGAt                                                                  <  1:1167080/93‑1 (MQ=255)
                         gAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTGTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATa                                                                 <  2:4828325/93‑1 (MQ=255)
                         gAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATa                                                                 <  1:9737861/93‑1 (MQ=255)
                          aaTGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaa                                                                >  1:3998234/1‑93 (MQ=255)
                            tGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaaaa                                                              >  2:2510187/1‑93 (MQ=255)
                              aTAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaaaaaa                                                            >  1:461061/1‑93 (MQ=255)
                                aaCTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaaaaaaaa                                                          <  1:6414196/93‑1 (MQ=255)
                                aaCTCAAGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaaaaaaaa                                                          <  2:2219260/93‑1 (MQ=255)
                                  cTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAACACAGATAAAAAAAAtg                                                        >  2:3793056/1‑93 (MQ=255)
                                    cAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAACCGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCACACCAGATCAAAAAAAtgtg                                                      >  1:1757829/1‑93 (MQ=255)
                                     aGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGa                                                     >  1:7206330/1‑93 (MQ=255)
                                     aGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGa                                                     >  2:1265805/1‑93 (MQ=255)
                                      ggAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGAt                                                    >  2:1484910/1‑93 (MQ=255)
                                        aaaaaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGc                                                  <  1:3120841/93‑1 (MQ=255)
                                        aaaaaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGc                                                  >  2:9189042/1‑93 (MQ=255)
                                         aaaaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCa                                                 >  1:8921376/1‑93 (MQ=255)
                                          aaaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCaa                                                <  2:5547629/93‑1 (MQ=255)
                                           aaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAg                                               <  1:4438197/93‑1 (MQ=255)
                                           aaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAg                                               >  1:2457781/1‑93 (MQ=255)
                                            aaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGt                                              <  2:4250307/93‑1 (MQ=255)
                                            aaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGt                                              <  1:606000/93‑1 (MQ=255)
                                              ttGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCa                                            <  1:2587775/93‑1 (MQ=255)
                                              ttGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCa                                            >  2:1975044/1‑93 (MQ=255)
                                                gCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACt                                          >  2:4476360/1‑93 (MQ=255)
                                                 cTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTa                                         <  2:7251836/93‑1 (MQ=255)
                                                 cTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTa                                         <  1:3665170/93‑1 (MQ=255)
                                                  tCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTAt                                        >  1:2826500/1‑93 (MQ=255)
                                                  tCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTAt                                        <  2:9349694/93‑1 (MQ=255)
                                                    aaCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgc                                      >  2:2333657/1‑93 (MQ=255)
                                                     aCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgca                                     >  1:5108722/1‑93 (MQ=255)
                                                     aCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgca                                     <  1:6946176/93‑1 (MQ=255)
                                                       ttCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgcagc                                   <  1:5933477/93‑1 (MQ=255)
                                                        tCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgcagca                                  >  1:683941/1‑93 (MQ=255)
                                                         ccTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCAc                                 >  1:1673201/1‑93 (MQ=255)
                                                         ccTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCAc                                 <  1:4109125/93‑1 (MQ=255)
                                                          cTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACg                                >  2:511399/1‑93 (MQ=255)
                                                          cTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACg                                >  2:9772308/1‑93 (MQ=255)
                                                           tAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGc                               >  2:1743072/1‑93 (MQ=255)
                                                            aaaGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCa                              >  1:7534131/1‑93 (MQ=255)
                                                             aaGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCTAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCAt                             >  1:8573858/1‑93 (MQ=255)
                                                             aaGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCAt                             >  2:7096604/1‑93 (MQ=255)
                                                                   gagaAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAAc                       >  2:2719637/1‑93 (MQ=255)
                                                                    agaAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACt                      <  1:3575479/93‑1 (MQ=255)
                                                                     gaAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTa                     <  1:478207/93‑1 (MQ=255)
                                                                     gaAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTa                     >  2:9591435/1‑93 (MQ=255)
                                                                     gaAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTa                     <  2:5386770/93‑1 (MQ=255)
                                                                       aaCGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTAtt                   >  1:9565492/1‑93 (MQ=255)
                                                                       aaCGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTAtt                   >  1:2273890/1‑93 (MQ=255)
                                                                       aaCGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTAtt                   <  2:8610126/93‑1 (MQ=255)
                                                                       aaCGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTAtt                   >  1:7732727/1‑93 (MQ=255)
                                                                        aCGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTc                  <  2:7785387/93‑1 (MQ=255)
                                                                          gCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTg                >  1:818127/1‑93 (MQ=255)
                                                                          gCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTg                <  1:5010132/93‑1 (MQ=255)
                                                                          gCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTg                >  2:7745577/1‑93 (MQ=255)
                                                                           ctctTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTgg               <  2:5719647/93‑1 (MQ=255)
                                                                           ctctTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTgg               >  1:7115375/1‑93 (MQ=255)
                                                                             cttctATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggcg             >  1:5381977/1‑93 (MQ=255)
                                                                             cttctATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggcg             >  1:8061868/1‑93 (MQ=255)
                                                                               tctATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggcggc           >  2:6268234/1‑93 (MQ=255)
                                                                                 tATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCa         >  1:9139084/1‑93 (MQ=255)
                                                                                   ttttAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCaaa       <  2:4715337/93‑1 (MQ=255)
                                                                                   ttttAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCaaa       >  2:5997226/1‑93 (MQ=255)
                                                                                     ttAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAg     >  2:9004959/1‑93 (MQ=255)
                                                                                      tAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGc    <  1:2143065/93‑1 (MQ=255)
                                                                                       aaCGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGcc   <  2:8118933/93‑1 (MQ=255)
                                                                                       aaCGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGcc   <  1:10007847/93‑1 (MQ=255)
                                                                                        aCGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCa  <  2:5224683/93‑1 (MQ=255)
                                                                                        aCGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCa  <  1:6760157/93‑1 (MQ=255)
                                                                                           |                                                                                         
AATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCA  >  NC_000913/3188146‑3188326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: