Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,191,015 G→A G46S (GGT→AGT)  b3051 → putative membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,191,0150GA98.3% 1663.6 / 3.2 465G46S (GGT→AGT) b3051putative membrane protein
Reads supporting (aligned to +/- strand):  ref base G (8/0);  new base A (213/244);  total (221/244)
Fisher's exact test for biased strand distribution p-value = 2.43e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 472 total aligned reads displayed.

CAATTATTGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTGGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATACTCTG  >  NC_000913/3190923‑3191104
                                                                                            |                                                                                          
cAATTATTGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTg                                                                                            >  1:3151635/1‑93 (MQ=255)
  attattGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTGGt                                                                                          >  1:8427201/1‑93 (MQ=255)
     attGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTa                                                                                       >  1:5144152/1‑93 (MQ=255)
     attGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTa                                                                                       >  1:4778369/1‑93 (MQ=255)
      ttGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAg                                                                                     >  1:4342393/1‑93 (MQ=255)
       tGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAgg                                                                                    <  1:4465533/93‑1 (MQ=255)
       tGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAgg                                                                                    <  2:6739905/93‑1 (MQ=255)
         ccGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTg                                                                                  >  1:1999451/1‑93 (MQ=255)
         ccGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGGACTAGTTTAGGTg                                                                                  <  1:6716139/93‑1 (MQ=255)
           gTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCCAGCTTTTGTTCGTACTGGTTTAGGTggg                                                                                >  1:6570833/1‑93 (MQ=255)
           gTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTggg                                                                                >  2:3058131/1‑93 (MQ=255)
           gTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTggg                                                                                <  2:1129558/93‑1 (MQ=255)
            tATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGc                                                                               >  1:9021033/1‑93 (MQ=255)
            tATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGCTTACGGTggc                                                                                >  1:5445115/1‑92 (MQ=255)
              tGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCaa                                                                             >  2:4485659/1‑93 (MQ=255)
              tGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCaa                                                                             >  2:6505527/1‑93 (MQ=255)
                cATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCaaaa                                                                           >  2:4032572/1‑93 (MQ=255)
                cATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCaaaa                                                                           >  1:3806705/1‑93 (MQ=255)
                  ttCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAg                                                                         >  2:2758147/1‑93 (MQ=255)
                   tCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGt                                                                        >  1:1303323/1‑93 (MQ=255)
                    cTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTg                                                                       <  2:6082458/93‑1 (MQ=255)
                     tGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTgg                                                                      <  2:7351332/93‑1 (MQ=255)
                      ttttATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGt                                                                     <  1:8874218/92‑1 (MQ=255)
                      gTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGt                                                                     >  1:4002954/1‑93 (MQ=255)
                       tttATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTa                                                                    >  2:2423205/1‑93 (MQ=255)
                       tttATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTa                                                                    <  1:7342153/93‑1 (MQ=255)
                       tttATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTa                                                                    <  2:615949/93‑1 (MQ=255)
                       tttATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTa                                                                    <  2:6003935/93‑1 (MQ=255)
                        ttattaTTGGAATTATTTTCGCCAGTTGCTATCGGCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTaa                                                                   <  1:8188204/93‑1 (MQ=255)
                        ttattaTTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTaa                                                                   >  2:876604/1‑93 (MQ=255)
                          attattGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATg                                                                 <  2:8871143/93‑1 (MQ=255)
                           ttattGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTGGTTTAGGTGGGCAAAAAGTGGTAATGa                                                                >  1:2355989/1‑93 (MQ=255)
                            tattGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAg                                                               >  1:10044528/1‑93 (MQ=255)
                             attGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGc                                                              <  2:4342392/93‑1 (MQ=255)
                                ggAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGt                                                           >  1:7514971/1‑93 (MQ=255)
                                  aaTTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTgg                                                         <  2:1546357/93‑1 (MQ=255)
                                  aaTTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTgg                                                         >  2:1024914/1‑93 (MQ=255)
                                   attattTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGGGGGCAAAAAGTGGTAATGACCGGTGgc                                                        >  1:503304/1‑93 (MQ=255)
                                    ttattTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGgcg                                                       >  2:9024495/1‑93 (MQ=255)
                                     tattTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCGAGCTTTTGGTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGgcgc                                                      >  1:5746081/1‑93 (MQ=255)
                                     tattTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGAGGTGgcgc                                                      >  2:7837015/1‑93 (MQ=255)
                                      attTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCa                                                     >  1:6260368/1‑93 (MQ=255)
                                       ttttCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCaa                                                    <  1:7651137/93‑1 (MQ=255)
                                        tttCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAAt                                                   <  1:3592628/93‑1 (MQ=255)
                                        tttCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAAt                                                   <  1:1713940/93‑1 (MQ=255)
                                         ttCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATc                                                  <  1:8717461/93‑1 (MQ=255)
                                          tCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCg                                                 <  2:2100190/93‑1 (MQ=255)
                                             ccAGGCTCTATCGTCGCGCTTCGGCAGATCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGa                                              <  1:7819772/93‑1 (MQ=255)
                                             ccAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGa                                              <  2:7716180/93‑1 (MQ=255)
                                             ccAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGa                                              <  2:9917906/93‑1 (MQ=255)
                                               aGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGCTg                                            >  2:8547134/1‑93 (MQ=255)
                                                ggCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGc                                           <  1:7164996/93‑1 (MQ=255)
                                                ggCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGc                                           >  2:9467354/1‑93 (MQ=255)
                                                ggCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGc                                           <  2:9219941/93‑1 (MQ=255)
                                                ggCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGc                                           <  1:9930576/93‑1 (MQ=255)
                                                  ctctATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCg                                         <  2:9678553/93‑1 (MQ=255)
                                                   tctATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGa                                        >  2:1250383/1‑93 (MQ=255)
                                                    ctATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGAt                                       >  1:1176883/1‑93 (MQ=255)
                                                     tATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATc                                      >  2:5731210/1‑93 (MQ=255)
                                                     tATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATc                                      <  1:7937415/93‑1 (MQ=255)
                                                      aTCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCt                                     >  2:3700137/1‑93 (MQ=255)
                                                      aTCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGCGGGCAAAAAGAGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCt                                     >  1:14219/1‑93 (MQ=255)
                                                       tcgtcgCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCtt                                    <  2:3471847/93‑1 (MQ=255)
                                                       tcgtcgCGCTGCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCtt                                    <  2:5206710/93‑1 (MQ=255)
                                                         gtcgCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTc                                  <  2:3806705/93‑1 (MQ=255)
                                                         gtcgCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGACGCAATCGTGATGCCGATCTTTc                                  >  2:6931901/1‑93 (MQ=255)
                                                             cgcTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGa                              <  2:556916/93‑1 (MQ=255)
                                                              gcTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGaa                             <  2:6302220/93‑1 (MQ=255)
                                                               cTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGaaa                            >  1:1492133/1‑93 (MQ=255)
                                                               cTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGaaa                            >  2:8350421/1‑93 (MQ=255)
                                                               cTTCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGaaa                            <  2:418678/93‑1 (MQ=255)
                                                                ttCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAaat                           >  1:2716816/1‑93 (MQ=255)
                                                                ttCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAaat                           <  1:3328649/93‑1 (MQ=255)
                                                                 tCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAaata                          <  2:2935540/93‑1 (MQ=255)
                                                                 tCGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAaata                          <  1:822142/93‑1 (MQ=255)
                                                                  cGGCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAaataa                         <  1:5605543/93‑1 (MQ=255)
                                                                    gCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATc                       <  2:9533258/93‑1 (MQ=255)
                                                                    gCAGAGCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATc                       <  1:414625/93‑1 (MQ=255)
                                                                       gagCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATcccc                    <  1:9200553/93‑1 (MQ=255)
                                                                       gagCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATcccc                    >  1:9790261/1‑93 (MQ=255)
                                                                       gagCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATcccc                    <  2:2835629/93‑1 (MQ=255)
                                                                        agCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCa                   <  1:2836912/93‑1 (MQ=255)
                                                                        agCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCa                   <  2:7947494/93‑1 (MQ=255)
                                                                        agCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCa                   <  2:2215283/93‑1 (MQ=255)
                                                                        agCAAGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCa                   >  1:2131638/1‑93 (MQ=255)
                                                                           aaGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCa                >  1:6330371/1‑93 (MQ=255)
                                                                           aaGCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCa                >  2:4550221/1‑93 (MQ=255)
                                                                             gCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAat              <  2:4868975/93‑1 (MQ=255)
                                                                             gCTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAat              >  1:9465766/1‑93 (MQ=255)
                                                                              cTTTTGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAata             <  1:5876213/93‑1 (MQ=255)
                                                                                  tGTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGaa         <  2:1791035/93‑1 (MQ=255)
                                                                                   gTTCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAAt        <  1:245098/93‑1 (MQ=255)
                                                                                    ttCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATa       <  2:7067808/93‑1 (MQ=255)
                                                                                    ttCGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATa       <  2:146243/93‑1 (MQ=255)
                                                                                    tccGTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATa       <  1:7703800/91‑1 (MQ=255)
                                                                                       gTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATActc    <  1:7060977/93‑1 (MQ=255)
                                                                                       gTACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATActc    <  2:5409075/93‑1 (MQ=255)
                                                                                        tACTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTATCATGAAATAATCCCCATCAATATGAATActct   >  1:9671853/1‑93 (MQ=255)
                                                                                         aCTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATACTCTg  <  2:4827599/93‑1 (MQ=255)
                                                                                         aCTAGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATACTCTg  >  2:7419680/1‑93 (MQ=255)
                                                                                            |                                                                                          
CAATTATTGCCGTATGCATTCTGTTTATTATTGGAATTATTTTCGCCAGGCTCTATCGTCGCGCTTCGGCAGAGCAAGCTTTTGTTCGTACTGGTTTAGGTGGGCAAAAAGTGGTAATGAGCGGTGGCGCAATCGTGATGCCGATCTTTCATGAAATAATCCCCATCAATATGAATACTCTG  >  NC_000913/3190923‑3191104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: