BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,211,779	T→C	R364R (CGT→CGC)	rpoD →	RNA polymerase sigma(70)

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,211,779	0	T	C	100.0%	1372.4 / NA	419	R364R (CGT→CGC)	rpoD	RNA polymerase sigma(70)
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (212/207); total (212/207)

Only 100 of 458 total aligned reads displayed.

TGAAGAAGTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGTATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAGAAATA  >  NC_000913/3211689‑3211868

tGAAGAAGTGCATCGTGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCAt                                                                                         >  1:7502676/1‑93 (MQ=255)

tGAAGAAGTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCAt                                                                                         >  2:4857049/1‑93 (MQ=255)

  aagaagTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGt                                                                                       <  2:910756/93‑1 (MQ=255)

  aagaagTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGt                                                                                       >  2:8663308/1‑93 (MQ=255)

    gaagTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTcc                                                                                     <  1:7385814/93‑1 (MQ=255)

     aagTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCa                                                                                    >  2:7074794/1‑93 (MQ=255)

     aagTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCa                                                                                    >  1:6682416/1‑93 (MQ=255)

     aagTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCa                                                                                    <  2:7800279/93‑1 (MQ=255)

      agTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCAt                                                                                   >  2:8604514/1‑93 (MQ=255)

       gTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATc                                                                                  <  1:8390794/93‑1 (MQ=255)

        tGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCg                                                                                 >  2:9865379/1‑93 (MQ=255)

           aTCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTg                                                                              <  1:5986903/93‑1 (MQ=255)

           aTCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGCTg                                                                              >  2:2625451/1‑93 (MQ=255)

            tCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGa                                                                             <  1:2154404/93‑1 (MQ=255)

            tCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGa                                                                             <  2:8776834/93‑1 (MQ=255)

             cgcgCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGaa                                                                            <  2:8113248/93‑1 (MQ=255)

             cgcgCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGaa                                                                            <  2:8882236/93‑1 (MQ=255)

              gcgcCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAg                                                                           <  2:6865917/93‑1 (MQ=255)

                 cccTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGa                                                                        <  2:10012734/93‑1 (MQ=255)

                  ccTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGaa                                                                       <  2:1665642/93‑1 (MQ=255)

                  ccTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGaa                                                                       <  1:4850718/93‑1 (MQ=255)

                   cTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGaaa                                                                      <  2:4175746/93‑1 (MQ=255)

                   cTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGaaa                                                                      >  2:5873195/1‑93 (MQ=255)

                   cTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGaaa                                                                      <  1:6233390/93‑1 (MQ=255)

                    tGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAg                                                                     >  1:9605317/1‑93 (MQ=255)

                     gCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGc                                                                    >  2:7404584/1‑93 (MQ=255)

                     gCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGc                                                                    >  2:5339755/1‑93 (MQ=255)

                      cAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGcc                                                                   <  1:4111881/93‑1 (MQ=255)

                        aaaaCTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCccg                                                                 >  1:2743122/1‑93 (MQ=255)

                        aaaaCTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCccg                                                                 >  2:661231/1‑93 (MQ=255)

                         aaaCTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCccgc                                                                >  1:9313659/1‑93 (MQ=255)

                          aaCTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCccgcg                                                               >  1:141643/1‑92 (MQ=255)

                            cTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCccgcagg                                                             >  1:7279069/1‑90 (MQ=255)

                            cTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGt                                                             <  1:4590091/93‑1 (MQ=255)

                            cTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGt                                                             <  2:5016755/93‑1 (MQ=255)

                            cTGCAGCAGATTGAAGAAGAAAACGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCccgccgc                                                             >  2:6074067/1‑92 (MQ=255)

                             tGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTg                                                            <  1:4404652/93‑1 (MQ=255)

                              gcagcaGATTGAAGAAGAAGCCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGc                                                           <  2:3729934/93‑1 (MQ=255)

                               cagcagATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCg                                                          <  1:7898381/93‑1 (MQ=255)

                                agcagATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCga                                                         <  2:1828754/93‑1 (MQ=255)

                                agcagATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCga                                                         >  1:3913915/1‑93 (MQ=255)

                                   agATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCgaaga                                                      <  1:8801237/93‑1 (MQ=255)

                                    gATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCgaagaa                                                     >  2:1912219/1‑93 (MQ=255)

                                      ttGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGaagaaag                                                   <  2:7644098/93‑1 (MQ=255)

                                       tGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGaagaaaga                                                  <  1:5567882/93‑1 (MQ=255)

                                        gaagaagaaACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAagag                                                 >  1:10008818/1‑93 (MQ=255)

                                        gaagaagaaACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAagag                                                 <  1:1273052/93‑1 (MQ=255)

                                         aagaagaaACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAgaga                                                >  2:2515376/1‑93 (MQ=255)

                                          agaagaaACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGAt                                               >  2:1344065/1‑93 (MQ=255)

                                           gaagaaACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATg                                              >  1:8841324/1‑93 (MQ=255)

                                              gaaACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGtt                                           >  1:4725164/1‑93 (MQ=255)

                                              gaaACCAGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATAGGTGGAGCGACAGACCGCCGTGCGAAGAAAGAGATGGtt                                           >  2:6429529/1‑93 (MQ=255)

                                                acccGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGa                                         <  2:9509802/91‑1 (MQ=255)

                                                 aCCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGaa                                        >  1:5171992/1‑93 (MQ=255)

                                                  ccGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAg                                       >  1:796265/1‑93 (MQ=255)

                                                  ccGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAg                                       <  1:5051564/93‑1 (MQ=255)

                                                   cGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGc                                      <  1:8097312/93‑1 (MQ=255)

                                                   cGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGc                                      <  1:8496622/93‑1 (MQ=255)

                                                    ggCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCg                                     >  2:7275228/1‑93 (MQ=255)

                                                        tGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACt                                 <  1:1062774/93‑1 (MQ=255)

                                                        tGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACt                                 >  1:3543422/1‑93 (MQ=255)

                                                          aCCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTa                               <  2:2303953/93‑1 (MQ=255)

                                                           ccATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTAc                              <  2:1564881/93‑1 (MQ=255)

                                                           ccATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTAc                              >  2:4247836/1‑93 (MQ=255)

                                                           ccATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTAc                              <  1:6149471/93‑1 (MQ=255)

                                                           ccATCGAGCAAGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTAc                              <  1:5365588/93‑1 (MQ=255)

                                                            cATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACg                             <  2:2888728/93‑1 (MQ=255)

                                                            cATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGGGCGAAGAAAGAGATGGTTGAAGCGAAATTAcc                             >  1:87121/1‑92 (MQ=255)

                                                             aTCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGt                            <  2:9605316/93‑1 (MQ=255)

                                                             aTCGAGCAGGTTAAAGATATCAACCGTAGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGt                            <  2:5946697/93‑1 (MQ=255)

                                                                gAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTg                         <  2:919299/93‑1 (MQ=255)

                                                                gAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTg                         >  2:5698672/1‑93 (MQ=255)

                                                                 aGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTgg                        <  2:1159319/93‑1 (MQ=255)

                                                                  gCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGt                       >  2:4057954/1‑93 (MQ=255)

                                                                     ggTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTAt                    >  1:1776331/1‑93 (MQ=255)

                                                                     ggTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTAt                    >  2:7479747/1‑93 (MQ=255)

                                                                      gTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTAtt                   >  1:1576594/1‑93 (MQ=255)

                                                                      gTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTAtt                   <  1:1923088/93‑1 (MQ=255)

                                                                      gTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTAtt                   >  2:4568280/1‑93 (MQ=255)

                                                                      gTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTAtt                   >  2:2385462/1‑93 (MQ=255)

                                                                      gTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTAtt                   <  1:3037680/93‑1 (MQ=255)

                                                                         aaaGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCt                >  2:4395445/1‑93 (MQ=255)

                                                                          aaGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTa               <  1:2574452/93‑1 (MQ=255)

                                                                           aGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTAt              >  1:6855592/1‑93 (MQ=255)

                                                                            gATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATc             <  1:6561456/93‑1 (MQ=255)

                                                                            gATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATc             >  2:3539749/1‑93 (MQ=255)

                                                                            gATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATc             <  1:6799378/93‑1 (MQ=255)

                                                                              tatCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGc           >  1:859012/1‑93 (MQ=255)

                                                                              tatCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGc           >  2:3268404/1‑93 (MQ=255)

                                                                              aatCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGc           <  1:3364521/92‑1 (MQ=255)

                                                                                 taaCCCTCGCATGGCCAGCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTaa        <  1:9889200/92‑1 (MQ=255)

                                                                                  aaCCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAg       >  2:3595387/1‑93 (MQ=255)

                                                                                  aaCCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAg       >  1:9078356/1‑93 (MQ=255)

                                                                                    ccGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAGaa     <  2:8274978/93‑1 (MQ=255)

                                                                                      gtcgcATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAGaaaa   >  2:549132/1‑92 (MQ=255)

                                                                                       tcgcATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAGAAATa  <  1:3756142/93‑1 (MQ=255)

                                                                                       tcgcATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAGAAATa  <  2:9347998/93‑1 (MQ=255)

                                                                                       tcgcATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAGAAATa  <  2:3823077/93‑1 (MQ=255)

                                                                                       tcgcATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAGAAATa  >  2:6265176/1‑93 (MQ=255)

                                                                                       tcgcATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAGAAATa  >  1:5798310/1‑93 (MQ=255)

TGAAGAAGTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGTATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAGAAATA  >  NC_000913/3211689‑3211868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`