Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,376,376 A→C intergenic (‑90/+129) rplM ← / ← yhcM 50S ribosomal subunit protein L13/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,376,3760AC96.1% 1435.8 / 28.1 459intergenic (‑90/+129)rplM/yhcM50S ribosomal subunit protein L13/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (8/10);  new base C (197/243);  total (205/254)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 489 total aligned reads displayed.

TTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAATAGCCTATGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATTATAGAGAAGTCGG  >  NC_000913/3376286‑3376465
                                                                                          |                                                                                         
ttAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTccc                                                                                         >  1:4211270/1‑93 (MQ=255)
ttAAAAGCTTACCCAAAAAATAGTTCCAGGTGGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTccc                                                                                         <  2:8128042/93‑1 (MQ=255)
  aaaaGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCcccc                                                                                       <  2:8827489/93‑1 (MQ=255)
     aGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTc                                                                                    <  2:9212687/93‑1 (MQ=255)
      gCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCg                                                                                   >  2:7267607/1‑93 (MQ=255)
          aCCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATa                                                                               <  1:3804035/93‑1 (MQ=255)
           cccAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAg                                                                              >  1:2091919/1‑93 (MQ=255)
            ccAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGc                                                                             <  2:8628224/93‑1 (MQ=255)
             cAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGcc                                                                            >  1:5787865/1‑93 (MQ=255)
             cAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGcc                                                                            <  2:6176995/93‑1 (MQ=255)
              aataaataGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCt                                                                           >  1:1001196/1‑93 (MQ=255)
              aataaataGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCt                                                                           >  1:1651408/1‑93 (MQ=255)
              aataaataGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAATAGCCt                                                                           >  1:2410781/1‑93 (MQ=255)
               ataaataGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTa                                                                          <  2:8536812/93‑1 (MQ=255)
               ataaataGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCAAATAGCCTa                                                                          >  1:4429433/1‑93 (MQ=255)
               ataaataGTTACACGCTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTa                                                                          >  2:1007513/1‑93 (MQ=255)
                taaataGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTac                                                                         <  1:6519103/93‑2 (MQ=255)
                aaaataGTTTCACGTTGGTGAACACCCAAACGTCGTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTac                                                                         <  1:8391762/92‑2 (MQ=255)
                  aataGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGc                                                                       <  2:9700925/93‑1 (MQ=255)
                    taGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCa                                                                     >  1:7532546/1‑93 (MQ=255)
                      gTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGc                                                                   >  1:3912051/1‑93 (MQ=255)
                       ttACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGca                                                                  >  1:924864/1‑93 (MQ=255)
                        tACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGcac                                                                 >  2:9601033/1‑93 (MQ=255)
                        tACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGcac                                                                 <  1:7676812/93‑1 (MQ=255)
                        tACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGcac                                                                 >  2:124914/1‑93 (MQ=255)
                         acacGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGcaca                                                                <  2:2573327/93‑1 (MQ=255)
                           acGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGcacaca                                                              >  2:5741310/1‑93 (MQ=255)
                              ttGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACaaca                                                           >  2:6029855/1‑91 (MQ=255)
                              ttGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACaaaa                                                           >  2:8265/1‑93 (MQ=255)
                              ttGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACaaaa                                                           >  2:1422906/1‑93 (MQ=255)
                                   gAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGGCTACGCCAGCACACAAAAAGttt                                                      >  2:5496288/1‑93 (MQ=255)
                                   gAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGttt                                                      <  2:8013623/93‑1 (MQ=255)
                                      cacCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTgg                                                   >  1:3136006/1‑93 (MQ=255)
                                      cacCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTgg                                                   <  1:4643214/93‑1 (MQ=255)
                                      cacCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTgg                                                   >  1:4857745/1‑93 (MQ=255)
                                          cAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGcaa                                               >  2:3753530/1‑93 (MQ=255)
                                          cAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGaaa                                               <  2:9343980/93‑1 (MQ=255)
                                          cAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGCTTTGGGaaa                                               >  1:524614/1‑93 (MQ=255)
                                           aaaCGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGaaaa                                              <  2:153288/93‑1 (MQ=255)
                                            aaCGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGaaaaa                                             >  2:2276069/1‑93 (MQ=255)
                                            aaCGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGaaaaa                                             <  2:8337869/93‑1 (MQ=255)
                                               gTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAAc                                          >  2:2659547/1‑93 (MQ=255)
                                               gTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAAc                                          <  2:7648371/93‑1 (MQ=255)
                                                tCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACt                                         >  2:9844439/1‑93 (MQ=255)
                                                 cTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACtt                                        <  1:3336369/93‑1 (MQ=255)
                                                 cTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACtt                                        >  2:5917986/1‑93 (MQ=255)
                                                  ttCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACttt                                       >  2:3500756/1‑93 (MQ=255)
                                                  ttCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACttt                                       <  1:4041020/93‑1 (MQ=255)
                                                  ttCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACttt                                       <  2:4750408/93‑1 (MQ=255)
                                                  ttCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACttt                                       <  2:1840164/93‑1 (MQ=255)
                                                   tCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTc                                      >  1:9726174/1‑93 (MQ=255)
                                                   tCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTc                                      <  2:2865384/93‑1 (MQ=255)
                                                    cAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCt                                     <  2:6613656/93‑1 (MQ=255)
                                                    cAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCt                                     >  1:1353638/1‑93 (MQ=255)
                                                    cAATTGTTGAGGCTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCt                                     <  2:5826027/93‑1 (MQ=255)
                                                     aaTTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCtt                                    >  2:6774483/1‑93 (MQ=255)
                                                     aaTTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCtt                                    <  1:3635301/93‑1 (MQ=255)
                                                     aaTTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCtt                                    <  1:2676847/93‑1 (MQ=255)
                                                     aaTTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCtt                                    <  1:7095594/93‑1 (MQ=255)
                                                     aaTTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCtt                                    >  2:3093024/1‑93 (MQ=255)
                                                      aTTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTg                                   <  2:8387980/93‑1 (MQ=255)
                                                        tgttgAGGTTCACACGACAAAGTCCGGCAAACCTTCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTa                                 <  1:9946205/93‑1 (MQ=255)
                                                        tgttgAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTa                                 <  1:6006142/93‑1 (MQ=255)
                                                        tgttgAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTa                                 <  1:8785934/93‑1 (MQ=255)
                                                         gttgAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTaa                                >  1:805571/1‑93 (MQ=255)
                                                          ttgAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAAc                               <  2:4681118/93‑1 (MQ=255)
                                                            gAGGTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGt                             >  1:7887044/1‑93 (MQ=255)
                                                              ggTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTgg                           <  1:9511699/93‑1 (MQ=255)
                                                              ggTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTgg                           <  1:2159446/93‑1 (MQ=255)
                                                              ggTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTgg                           >  1:9386070/1‑93 (MQ=255)
                                                               gTTCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTggg                          <  2:3967086/93‑1 (MQ=255)
                                                                ttCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTgggg                         >  2:7693471/1‑93 (MQ=255)
                                                                ttCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTgggg                         >  1:8461715/1‑93 (MQ=255)
                                                                ttCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTgggg                         >  1:6269188/1‑93 (MQ=255)
                                                                 tCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGt                        <  1:8243694/93‑1 (MQ=255)
                                                                 tCACACGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGt                        <  1:5500760/93‑1 (MQ=255)
                                                                     acGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCa                    <  2:6992314/93‑1 (MQ=255)
                                                                     acGACAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCa                    >  2:9934142/1‑93 (MQ=255)
                                                                        aCAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGa                 >  2:5603380/1‑93 (MQ=255)
                                                                        aCAAAGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGa                 >  1:8878236/1‑93 (MQ=255)
                                                                          aaaGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGAtt               <  1:1059410/93‑1 (MQ=255)
                                                                          aaaGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGGCGCAGGAtt               >  2:4150057/1‑93 (MQ=255)
                                                                          aaaGTCCGGCAAACCTACCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGAtt               >  1:8175419/1‑93 (MQ=255)
                                                                           aaGTCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATta              >  1:2780336/1‑93 (MQ=255)
                                                                           aaGGCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATta              <  1:8578188/93‑1 (MQ=255)
                                                                              tCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATTATag           <  1:5114360/93‑1 (MQ=255)
                                                                              tCCGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATTATag           <  2:5292547/93‑1 (MQ=255)
                                                                               ccGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATTATaga          <  1:6678650/93‑1 (MQ=255)
                                                                               ccGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATTATaga          <  2:7465816/93‑1 (MQ=255)
                                                                                cGGCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATTATagag         <  2:4517355/93‑1 (MQ=255)
                                                                                  gCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATTATAGAGaa       <  2:2134817/93‑1 (MQ=255)
                                                                                  gCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATTATAGAGaa       >  2:5005188/1‑93 (MQ=255)
                                                                                  gCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATTATAGAGaa       <  2:3400658/93‑1 (MQ=255)
                                                                                  gCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATTATAGAGaa       >  1:2734872/1‑93 (MQ=255)
                                                                                  gCAAACCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATTATAGAGaa       <  1:1862206/93‑1 (MQ=255)
                                                                                  gCAAACCGTCGCCTTCGAATAGCCAACGCCAGCACACAAAAAGTTTTGGAAAAAAAACTTTCTTGTAACGTGGGGTCGTAAGATTATAGaaaa       <  2:24185/93‑1 (MQ=255)
                                                                                    aaaCCTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATTATAGAGAAGt     >  2:2015828/1‑93 (MQ=255)
                                                                                    aaaCCTACCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATTATAGAGAAgc     >  1:9085354/1‑92 (MQ=255)
                                                                                       ccTCCCCCTTCGAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATTATAGAGAAGTCgg  <  1:6844098/93‑1 (MQ=255)
                                                                                       ccTACCCCTTCAAATAGCCTACGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATTATAGAGAAGTCgg  <  1:7205516/93‑1 (MQ=255)
                                                                                          |                                                                                         
TTAAAAGCTTACCCAATAAATAGTTACACGTTGGTGAACACCCAAACGTCTTCAATTGTTGAGGTTCACACGACAAAGTCCGGCAAACCTACCCCTTCGAATAGCCTATGCCAGCACACAAAAAGTTTTGGGAAAAAAACTTTCTTGTAACGTGGGGTCGCAGGATTATAGAGAAGTCGG  >  NC_000913/3376286‑3376465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: