BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	409,218	A→G	V9A (GTT→GCT)	yaiD ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	409,218	0	A	G	99.7%	1203.0 / NA	369	V9A (GTT→GCT)	yaiD	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (175/192); total (176/193)
Fisher's exact test for biased strand distribution p-value = 4.78e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 385 total aligned reads displayed.

TCCTGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAACCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCTTGC  >  NC_000913/409128‑409307

tCCTGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGcc                                                                                         <  1:6464989/93‑1 (MQ=255)

tCCTGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGcc                                                                                         >  1:8493178/1‑93 (MQ=255)

tCCTGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGcc                                                                                         >  1:9078341/1‑93 (MQ=255)

   tGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCAtt                                                                                      >  2:3450075/1‑93 (MQ=255)

   tGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCAtt                                                                                      >  2:1479520/1‑93 (MQ=255)

     gCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTaa                                                                                    >  2:9241600/1‑93 (MQ=255)

      cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTaaa                                                                                   <  1:7712127/93‑1 (MQ=255)

        gCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAAtt                                                                                 <  2:2667527/93‑1 (MQ=255)

           gCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAAttttt                                                                              >  2:1241742/1‑93 (MQ=255)

            cATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTg                                                                             >  2:590331/1‑93 (MQ=255)

             aTGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGa                                                                            >  2:1363078/1‑93 (MQ=255)

              tGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGac                                                                           >  1:1572548/1‑92 (MQ=255)

               ggggTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAAc                                                                          <  2:311904/93‑1 (MQ=255)

                gggTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAAcc                                                                         <  2:2020628/93‑1 (MQ=255)

                gggTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAAcc                                                                         >  2:1129561/1‑93 (MQ=255)

                   tAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACcaca                                                                      <  1:2405848/93‑1 (MQ=255)

                   tAAATGCAATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACcaca                                                                      <  2:6876595/93‑1 (MQ=255)

                    aaaTGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTTAGCCATTAAATTTTTGAACCACAg                                                                     <  2:5002828/93‑1 (MQ=255)

                    aaaTGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAg                                                                     >  2:1611708/1‑93 (MQ=255)

                    aaaTGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAg                                                                     >  1:3370239/1‑93 (MQ=255)

                    aaaTGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAg                                                                     <  1:8148301/93‑1 (MQ=255)

                     aaTGCCATCGAGGCTAGCTGTTTTTCCTTCTCTTCTGCACGCAGCGAAATCTCGCGGCTACGACGGTAAGCCATTAAATTTTTGAACCACAGc                                                                    >  2:7712414/1‑93 (MQ=255)

                      aTGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCa                                                                   >  1:6304409/1‑93 (MQ=255)

                        gCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATg                                                                 >  2:9443209/1‑93 (MQ=255)

                           aTCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATa                                                              >  1:3724478/1‑93 (MQ=255)

                           aTCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATa                                                              >  2:179159/1‑93 (MQ=255)

                           aTCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATa                                                              <  2:4670009/93‑1 (MQ=255)

                            tCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTTAAACACAGCATGATaa                                                             >  1:6579678/1‑93 (MQ=255)

                            tCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCGCAGCATGATaa                                                             <  2:9900384/93‑1 (MQ=255)

                            tCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATaa                                                             <  1:8714478/93‑1 (MQ=255)

                              gAGGCTAGCTGGTTTTCCTTCTCTGCCGCGCGCAGCGAAAGCTCGCGGCTAAGACGGTAAGGCATTAAATGTTTGAACCGCAGCATGATAAtt                                                           <  2:8480332/93‑1 (MQ=255)

                               aGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAAttt                                                          >  1:5773614/1‑93 (MQ=255)

                               aGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAAttt                                                          <  1:9151772/93‑1 (MQ=255)

                                ggCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTc                                                         >  2:7158441/1‑93 (MQ=255)

                                 gCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTcc                                                        <  2:9058262/93‑1 (MQ=255)

                                  cTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCa                                                       <  1:4943578/93‑1 (MQ=255)

                                  cTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCa                                                       >  2:6626094/1‑93 (MQ=255)

                                  cTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCa                                                       <  1:9901379/93‑1 (MQ=255)

                                   tAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCAc                                                      <  2:2895500/93‑1 (MQ=255)

                                   tAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCAc                                                      <  1:5236677/93‑1 (MQ=255)

                                   tAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCAc                                                      >  2:5743265/1‑93 (MQ=255)

                                   tAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCAc                                                      >  2:8889238/1‑93 (MQ=255)

                                   tAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCAc                                                      >  1:1145315/1‑93 (MQ=255)

                                   tAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCAc                                                      <  2:3056878/93‑1 (MQ=255)

                                    aGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACg                                                     >  2:737581/1‑93 (MQ=255)

                                     gCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACgg                                                    >  2:7634903/1‑93 (MQ=255)

                                     gCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACgg                                                    >  2:1749606/1‑93 (MQ=255)

                                       tGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGcc                                                  <  2:5340654/93‑1 (MQ=255)

                                        gTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCt                                                 <  2:4024423/93‑1 (MQ=255)

                                        gTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCt                                                 >  1:5459174/1‑93 (MQ=255)

                                          ttttCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTg                                               <  2:2384816/93‑1 (MQ=255)

                                               cATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGtt                                          >  2:4587905/1‑93 (MQ=255)

                                                aTCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTa                                         <  2:1816624/93‑1 (MQ=255)

                                                 tctcTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTaa                                        <  2:7879702/93‑1 (MQ=255)

                                                 tctcTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTaa                                        <  2:2238436/93‑1 (MQ=255)

                                                 tctcTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTaa                                        >  1:6118302/1‑93 (MQ=255)

                                                   tcttctGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAAt                                      >  1:5083893/1‑93 (MQ=255)

                                                   tcttctGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAAt                                      >  1:28848/1‑93 (MQ=255)

                                                    cttctGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAAtt                                     >  1:8098016/1‑93 (MQ=255)

                                                     ttctGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTACAttt                                    >  2:2808458/1‑93 (MQ=255)

                                                     ttctGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAAttt                                    >  1:9320538/1‑93 (MQ=255)

                                                      tctGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTa                                   >  1:4201060/1‑93 (MQ=255)

                                                         gCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCg                                >  1:4289839/1‑93 (MQ=255)

                                                         gCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCg                                <  1:7400600/93‑1 (MQ=255)

                                                          cACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCgg                               <  1:1210720/93‑1 (MQ=255)

                                                           aagCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCggg                              <  2:3267403/91‑1 (MQ=255)

                                                           aCGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCggg                              <  2:3807645/93‑1 (MQ=255)

                                                             gCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCa                            <  2:2974468/93‑1 (MQ=255)

                                                             gCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCa                            <  1:7256747/93‑1 (MQ=255)

                                                               aGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATg                          <  2:1216914/93‑1 (MQ=255)

                                                                gCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGa                         >  1:6861317/1‑93 (MQ=255)

                                                                gCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGa                         >  2:8138028/1‑93 (MQ=255)

                                                                gCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGa                         <  2:5135357/93‑1 (MQ=255)

                                                                gCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGa                         <  1:4745943/93‑1 (MQ=255)

                                                                gCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGa                         >  1:5647158/1‑93 (MQ=255)

                                                                   aaaTCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATaa                      >  1:5136124/1‑93 (MQ=255)

                                                                    aaTCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAAc                     <  1:3279225/93‑1 (MQ=255)

                                                                     aTCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACg                    <  1:2603609/93‑1 (MQ=255)

                                                                     aTCTCGCAGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAAca                    >  2:6166043/1‑92 (MQ=255)

                                                                         cgcgGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAAtt                <  1:9577474/93‑1 (MQ=255)

                                                                          gcgGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTg               <  2:4449806/93‑1 (MQ=255)

                                                                            ggCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTc             >  2:5529275/1‑93 (MQ=255)

                                                                            ggCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTc             <  2:1441146/93‑1 (MQ=255)

                                                                              cTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTcgg           <  2:3743148/93‑1 (MQ=255)

                                                                              cTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTcgg           <  2:8047616/93‑1 (MQ=255)

                                                                              cTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTcgg           >  1:7750053/1‑93 (MQ=255)

                                                                              cTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTcgg           <  2:9604944/93‑1 (MQ=255)

                                                                              cTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTcgg           <  2:422091/93‑1 (MQ=255)

                                                                               tAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTcggc          >  1:2086950/1‑93 (MQ=255)

                                                                               tAAGACGGTAAGCCATTAAATTTTTGAAACACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTcggc          >  2:8712032/1‑93 (MQ=255)

                                                                                  gACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCggcggc       <  1:1088519/93‑1 (MQ=255)

                                                                                   actgTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGcc      <  1:1892124/90‑1 (MQ=255)

                                                                                    cGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCt     <  1:7551310/93‑1 (MQ=255)

                                                                                    cGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCt     <  1:2180366/93‑1 (MQ=255)

                                                                                    cGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCt     <  2:4789057/93‑1 (MQ=255)

                                                                                      gTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATCACGAATAGCCGGCCGCCGTg   >  2:6306320/1‑93 (MQ=255)

                                                                                      gTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCTTg   >  2:7788021/1‑93 (MQ=255)

                                                                                      gTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCTTg   >  1:3607484/1‑93 (MQ=255)

                                                                                       tAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCTTGc  >  1:140685/1‑93 (MQ=255)

                                                                                       tAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCTTGc  >  1:3065555/1‑93 (MQ=255)

TCCTGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAACCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCTTGC  >  NC_000913/409128‑409307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`