Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,729,567 T→C L270L (TTG→CTG)  xylF → xylose binding protein transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,729,5670TC92.8% 1635.3 / 86.5 587L270L (TTG→CTG) xylFxylose binding protein transport system
Reads supporting (aligned to +/- strand):  ref base T (27/15);  new base C (275/270);  total (302/285)
Fisher's exact test for biased strand distribution p-value = 1.08e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.35e-01

Only 100 of 627 total aligned reads displayed.

TAGCAATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGTTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGATGTC  >  NC_000913/3729475‑3729659
                                                                                            |                                                                                            
  gCAATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGttgctg                                                                                            >  2:1798000/1‑93 (MQ=255)
  gCAATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGttgctg                                                                                            >  2:4788865/1‑93 (MQ=255)
     aTCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGTTGGCa                                                                                         <  1:3609707/93‑1 (MQ=255)
     aTCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCa                                                                                         >  2:8163717/1‑93 (MQ=255)
      tctcCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCaa                                                                                        >  2:2285345/1‑93 (MQ=255)
       ctcCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCaaa                                                                                       <  1:3911276/93‑1 (MQ=255)
       ctcCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCaaa                                                                                       <  2:3348944/93‑1 (MQ=255)
          cGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATAc                                                                                    <  1:6780812/93‑1 (MQ=255)
          cGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATAc                                                                                    <  2:493333/93‑1 (MQ=255)
               aGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCg                                                                               >  2:9357083/1‑93 (MQ=255)
               aGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCg                                                                               >  1:2658188/1‑93 (MQ=255)
                ggATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGc                                                                              >  2:9753436/1‑93 (MQ=255)
                ggAGGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGc                                                                              <  2:1532182/93‑1 (MQ=255)
                  aTGCGGATCTCGCGGGTTTTAAACATATTGCAGCCGGTACGCAAACTATGACGGTGTATAGACCAATTACGTTGCTGGCAAATACTGCCGCAg                                                                            <  1:8981115/93‑1 (MQ=255)
                    gCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGaa                                                                          <  2:2146566/93‑1 (MQ=255)
                     cGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGaaa                                                                         <  2:9598221/93‑1 (MQ=255)
                      ggATCTCGCAGGTATTAAACGTATTGCCGCCGGTACGCAAACTAAGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAAt                                                                        <  2:6508188/93‑1 (MQ=255)
                       gATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAAtt                                                                       >  1:1792209/1‑93 (MQ=255)
                        aTCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGCCAAATACTGCCGCAGCAATTg                                                                      >  1:7395221/1‑93 (MQ=255)
                          ctcGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGTTGGCAAATACTGCCGCAGAAATTGcc                                                                    >  1:911657/1‑93 (MQ=255)
                            cGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGTTGGCAAATACTGCCGCAGAAATTGCCGt                                                                  >  1:7435748/1‑93 (MQ=255)
                            cGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGTTGGCAAATACTGCCGCAGAAATTGCCGt                                                                  >  1:4591249/1‑93 (MQ=255)
                            cGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGt                                                                  >  1:1594098/1‑93 (MQ=255)
                             gCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGtt                                                                 >  1:1102206/1‑93 (MQ=255)
                             gCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGtt                                                                 >  1:5735688/1‑93 (MQ=255)
                             gCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGtt                                                                 >  1:2089062/1‑93 (MQ=255)
                             gCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGtt                                                                 >  1:1917667/1‑93 (MQ=255)
                              cAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTg                                                                <  1:4104084/93‑1 (MQ=255)
                               aGGTATTAAACGTATTGCTGCCGGTACTCAAACTAGGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGa                                                               <  1:837447/93‑1 (MQ=255)
                                ggTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAg                                                              >  1:1235269/1‑93 (MQ=255)
                                 gTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGt                                                             >  1:4838525/1‑93 (MQ=255)
                                 gTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGt                                                             <  1:7798406/93‑1 (MQ=255)
                                 gTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGt                                                             >  1:5476242/1‑93 (MQ=255)
                                   aTTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGTTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTg                                                           >  2:7465009/1‑93 (MQ=255)
                                   aTTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTg                                                           <  2:532072/93‑1 (MQ=255)
                                    ttAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTgg                                                          >  1:8226490/1‑93 (MQ=255)
                                       aaCGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCa                                                       >  1:10026264/1‑93 (MQ=255)
                                         cctATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGGTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAAt                                                     <  1:3319239/91‑1 (MQ=255)
                                         cGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAAt                                                     <  2:8260480/93‑1 (MQ=255)
                                         agTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAAt                                                     <  1:7688901/92‑1 (MQ=255)
                                          gTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGTTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATg                                                    <  2:5099581/93‑1 (MQ=255)
                                          gTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATg                                                    <  1:6612605/93‑1 (MQ=255)
                                          gTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATg                                                    <  2:3209481/93‑1 (MQ=255)
                                             ttGCTGTTGGGACGCAAACTATGATGGTGTATAAACCTATTATGTTGCTGGCAAATACTGCCTCATAAATTGCCGTTGAGTTTGGCAATGGTc                                                 >  2:8921754/1‑93 (MQ=255)
                                             ttGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTc                                                 >  1:4953988/1‑93 (MQ=255)
                                              tgctgcCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCa                                                <  2:7663263/93‑1 (MQ=255)
                                              tgctgcCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCa                                                <  1:3056925/93‑1 (MQ=255)
                                               gctgcCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAg                                               >  2:1730924/1‑93 (MQ=255)
                                               gctgcCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAg                                               <  1:7930437/93‑1 (MQ=255)
                                                 tgcCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGa                                             >  2:4358175/1‑93 (MQ=255)
                                                 tgcCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGa                                             >  2:2931867/1‑93 (MQ=255)
                                                  gcCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGaa                                            <  2:2740491/93‑1 (MQ=255)
                                                   ccGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAAc                                           <  2:3499804/93‑1 (MQ=255)
                                                    cGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAAcc                                          >  1:9516322/1‑93 (MQ=255)
                                                      gTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCaa                                        >  1:6308743/1‑93 (MQ=255)
                                                      gTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCaa                                        <  1:2933244/93‑1 (MQ=255)
                                                      gTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCaa                                        >  2:461523/1‑93 (MQ=255)
                                                           gaaaCTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCa                                   <  1:8706618/92‑1 (MQ=255)
                                                            aaaCTATGACGGTGTATAAACCTATTACGTTGTTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAg                                  <  2:7951448/93‑1 (MQ=255)
                                                             aaCTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGa                                 >  1:3458112/1‑93 (MQ=255)
                                                             aaCTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGa                                 >  1:4747197/1‑93 (MQ=255)
                                                             aaCTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGa                                 >  2:7158349/1‑93 (MQ=255)
                                                             aaCTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGa                                 >  2:6826288/1‑93 (MQ=255)
                                                              aCTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGAt                                >  2:1050416/1‑93 (MQ=255)
                                                               cTATGACGGTGTATAAACCTATTACGTTGTTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATa                               >  2:6014198/1‑93 (MQ=255)
                                                                tATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATAc                              >  2:3093262/1‑93 (MQ=255)
                                                                 aTGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATAcc                             <  2:2475985/93‑1 (MQ=255)
                                                                 aTGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATAcc                             >  1:2494527/1‑93 (MQ=255)
                                                                 aTGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATAcc                             >  2:5732509/1‑93 (MQ=255)
                                                                  tGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACca                            <  2:2344811/93‑1 (MQ=255)
                                                                   gACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACcac                           >  1:5114085/1‑93 (MQ=255)
                                                                    aCGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACcaca                          <  2:3997119/93‑1 (MQ=255)
                                                                    aCGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACcaca                          <  2:3828834/93‑1 (MQ=255)
                                                                    aCGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACcaca                          >  1:313962/1‑93 (MQ=255)
                                                                     cGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCacac                         <  2:4165984/93‑1 (MQ=255)
                                                                     cGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCacac                         <  2:8625620/93‑1 (MQ=255)
                                                                      ggTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACt                        >  2:780328/1‑93 (MQ=255)
                                                                      ggTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACt                        >  1:9197733/1‑93 (MQ=255)
                                                                         gtATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGaa                     >  2:2001992/1‑93 (MQ=255)
                                                                         gtATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGaa                     <  1:7051547/93‑1 (MQ=255)
                                                                          tataAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGaat                    >  1:9366508/1‑93 (MQ=255)
                                                                           ataAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGaata                   >  2:9067507/1‑93 (MQ=255)
                                                                            taAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGaataa                  <  2:4251894/93‑1 (MQ=255)
                                                                            taAACCTATTACGTTGCTGCCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGaataa                  <  1:9782785/93‑1 (MQ=255)
                                                                             aacccTATAACGTAGCGGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGaataat                 <  2:124720/90‑1 (MQ=255)
                                                                              aaCCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATg                <  2:2641789/93‑1 (MQ=255)
                                                                               aCCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATgg               <  2:5510938/93‑1 (MQ=255)
                                                                                ccTATTACGTTGTTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGc              >  1:2288993/1‑93 (MQ=255)
                                                                                ccTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGc              >  1:5922393/1‑93 (MQ=255)
                                                                                 cTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGcc             >  2:883852/1‑93 (MQ=255)
                                                                                  tATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCt            >  1:23785/1‑93 (MQ=255)
                                                                                  tATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCt            >  1:4050356/1‑93 (MQ=255)
                                                                                     tACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGaa         <  1:4276987/93‑1 (MQ=255)
                                                                                      aCGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGaaa        >  2:3566775/1‑93 (MQ=255)
                                                                                       cGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAg       <  2:6250580/93‑1 (MQ=255)
                                                                                       cGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAg       >  1:524731/1‑93 (MQ=255)
                                                                                       cGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAg       <  1:341812/93‑1 (MQ=255)
                                                                                        gttgctGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGa      <  2:8436636/93‑1 (MQ=255)
                                                                                        gttgctGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGa      <  1:1408429/93‑1 (MQ=255)
                                                                                           gttgGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGATGt   <  1:8569698/93‑1 (MQ=255)
                                                                                            |                                                                                            
TAGCAATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGTTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGATGTC  >  NC_000913/3729475‑3729659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: