| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,957,092 | +CC | intergenic (+26/+58) | ilvC → / ← ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,957,091 | 1 | . | C | 95.5% | 288.2 / 9.1 | 112 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/5); new base C (6/101); total (6/106) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 | |||||||||||
| * | NC_000913 | 3,957,091 | 2 | . | C | 95.6% | 290.0 / 9.0 | 113 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/5); new base C (6/102); total (6/107) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.52e-01 | |||||||||||
Only 100 of 123 total aligned reads displayed.
AGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑A‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3957002‑3957173 || gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCCCC‑‑CCCCC‑‑A‑‑cccc > 2:1964581/1‑90 (MQ=255) gtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑A‑‑C‑‑cctctcc < 2:2528387/93‑4 (MQ=255) gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCcaca < 1:1028594/93‑1 (MQ=38) gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCcaca < 2:5555980/93‑1 (MQ=38) taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACag < 1:5296332/93‑1 (MQ=37) aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagg < 2:1667688/93‑1 (MQ=37) aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagg < 1:4814810/93‑1 (MQ=37) aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagg < 2:559559/93‑1 (MQ=37) aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACaggg < 2:1651523/93‑1 (MQ=37) gAACCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCC‑‑CCCCGGCC‑‑C‑‑TCTCCCGCaggga < 2:4288244/93‑1 (MQ=25) gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACaggga < 2:3196311/93‑1 (MQ=37) aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagggaga < 2:711556/93‑1 (MQ=37) aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagggagag < 1:651080/93‑1 (MQ=37) aCTACGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagggagag < 1:2707590/93‑1 (MQ=25) tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagggagaggg < 1:6298810/93‑1 (MQ=25) tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagggagaggg < 2:4103744/93‑1 (MQ=25) gcgcGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACagggagaggga < 1:2328671/93‑1 (MQ=25) cgGCTATATGACAGATATGAAGCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGaa < 1:1634713/93‑1 (MQ=21) cgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGaa < 2:2792994/93‑1 (MQ=25) gCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGaaaa < 1:6002934/93‑1 (MQ=21) cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAac < 1:4512987/93‑1 (MQ=21) tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCC‑‑CCCCC‑‑ACCC‑‑CCTCCCCCCAGGAGAGGGGGaaaaaa > 1:5894655/1‑91 (MQ=21) tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAaca < 1:2881568/93‑1 (MQ=21) atatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAacac < 2:692652/93‑1 (MQ=21) atGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑c < 1:2920941/93‑1 (MQ=21) gACAGATATGACACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑aa < 2:4598999/93‑1 (MQ=21) gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGGCCTCACCCCCCC‑‑T‑‑C‑‑TCTCCCCCATGGAGGGGGAGAGAACACT‑a‑aa > 2:5140659/1‑93 (MQ=255) gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑aa < 2:4549254/93‑1 (MQ=21) aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑g < 2:700721/93‑1 (MQ=21) aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑g < 2:1503394/93‑1 (MQ=21) aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑g < 2:2502993/93‑1 (MQ=21) aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑g < 2:141965/93‑1 (MQ=21) aGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑ggc < 1:3237166/93‑3 (MQ=21) aGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑ggc < 2:5546462/93‑3 (MQ=21) gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCT‑‑ACCC‑‑TCTTCCACATGGGGGGGGAGAAAACACT‑C‑aacgcc > 1:3186964/1‑89 (MQ=21) gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑ggcc < 2:4692227/93‑4 (MQ=21) aatatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑ggcc < 1:3879865/92‑4 (MQ=18) atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑ggcct < 2:3063748/93‑5 (MQ=21) atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTtc < 2:5065353/93‑1 (MQ=18) atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTtc < 2:5698581/93‑1 (MQ=18) gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCC‑‑ACCC‑‑TCTCCCCCAGGGAGAGGGAGAAAACACT‑CAAA‑GCCTtctc > 2:2023207/1‑93 (MQ=18) aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTcc < 1:2458931/93‑1 (MQ=18) aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCt < 2:4530529/93‑1 (MQ=18) aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTg < 1:5029976/93‑1 (MQ=18) aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTg < 1:4757539/93‑1 (MQ=18) gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGga < 1:569997/93‑1 (MQ=21) aTTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGgaga < 2:4218555/93‑1 (MQ=18) aTTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGgaga < 1:1870230/93‑1 (MQ=18) aTTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGgaga < 1:4922320/93‑1 (MQ=18) aTTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCCCA‑‑CCCCGCCC‑‑C‑‑CCTCCCCCCGGGGGGGGGGGGAAAAACTAC‑AA‑GCCTTCTCCTggggg > 2:4141417/1‑90 (MQ=12) ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGaa < 1:4267159/93‑1 (MQ=18) ttGCTGTAGGGGGTTAAGTGCGCGCTGATCCCCTCC‑‑CCCCG‑‑ACCC‑‑CCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGaa < 2:5302792/93‑1 (MQ=18) tGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAg < 1:650441/93‑1 (MQ=18) gCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCCCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAgg < 2:3574081/93‑1 (MQ=18) cTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGc < 2:3527743/93‑1 (MQ=18) cTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGc < 2:3143398/93‑1 (MQ=18) tttGCGGGTTAAGTGCTCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGAGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCt < 2:6271825/92‑1 (MQ=18) ttGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCtt < 2:6101429/93‑1 (MQ=18) ttGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCtt < 1:2729665/93‑1 (MQ=18) gtGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCtt < 1:605021/92‑1 (MQ=18) gCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGGGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGc > 1:3193077/1‑93 (MQ=18) gCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:1570314/93‑1 (MQ=18) gCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 2:3180618/93‑1 (MQ=18) ttAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 2:293587/93‑1 (MQ=18) ttAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 1:4844363/93‑1 (MQ=18) ttAAGTGCGCGCTGATGACCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 1:2441000/93‑1 (MQ=18) tAAGTGCGCGCTGATGCCCTCG‑‑CCCCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 1:4723319/93‑1 (MQ=18) tAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 1:4031086/93‑1 (MQ=18) aaGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 1:970136/93‑1 (MQ=18) aGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:3317814/93‑1 (MQ=18) aGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 2:4489672/93‑1 (MQ=18) tGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 1:2513177/93‑1 (MQ=21) tGCGCGCTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 1:6160169/93‑1 (MQ=21) ggctcgcTGATGCCTTCG‑‑CCCGG‑‑A‑‑CCGTCTCCCGCAGGGAGAGGGAGAAAACTCT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 2:1459393/89‑1 (MQ=19) gcgcgcTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 2:5962141/93‑1 (MQ=21) gcgcgcTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 2:2213932/93‑1 (MQ=21) cgcgcTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 1:6154697/93‑1 (MQ=21) gcgcTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGt < 2:4504717/93‑1 (MQ=21) gcgcTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGt < 1:489710/93‑1 (MQ=21) gcTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 2:23900/93‑1 (MQ=21) cggATGCCCTCC‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACGCT‑C‑AAGGCCTCCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 2:3487822/91‑1 (MQ=21) cTGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 2:316080/93‑1 (MQ=21) tGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAg < 2:1126514/93‑1 (MQ=25) tGATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAg < 1:462216/93‑1 (MQ=25) gATGCCCTCC‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 1:93596/93‑1 (MQ=25) gATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 1:931863/93‑1 (MQ=25) gATGCCCTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 2:508328/93‑1 (MQ=25) cccTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 1:6237745/93‑1 (MQ=25) cccTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 2:3325020/93‑1 (MQ=25) cccGCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 1:4880619/93‑1 (MQ=25) ccTCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt < 2:6017890/93‑1 (MQ=25) tCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 2:903249/93‑1 (MQ=37) tCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa > 2:5958298/1‑93 (MQ=37) tCA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa > 2:4866222/1‑93 (MQ=37) cA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 1:3932169/93‑1 (MQ=37) cA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 1:2849179/93‑1 (MQ=37) cA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 2:4788886/93‑1 (MQ=37) cA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 1:6144739/93‑1 (MQ=37) cA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 1:1871355/93‑1 (MQ=37) cA‑‑CCCCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat > 2:4190781/1‑93 (MQ=37) || AGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCA‑‑CCCCG‑‑A‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACT‑C‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3957002‑3957173 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |