BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,957,551	+T	intergenic (‑120/‑741)	ppiC ← / → rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,957,550	1	.	T	100.0%	634.0 / NA	173	intergenic (‑119/‑742)	ppiC/rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase
Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (87/86); total (87/86)

Only 100 of 178 total aligned reads displayed.

AGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑T‑G‑C‑TCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT  >  NC_000913/3957471‑3957627

aGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGT‑ccc                                                                    >  1:3455571/1‑92 (MQ=255)

 gCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGT‑ccct                                                                   <  1:5340278/93‑3 (MQ=255)

 gCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGT‑cccc                                                                   >  2:2335127/1‑91 (MQ=255)

  cATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGT‑ccctc                                                                  <  2:4828566/93‑4 (MQ=255)

   aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGT‑ccctca                                                                 >  1:1303296/1‑89 (MQ=255)

     gATCCGCAGATGCTAACGTAATTGTCAGTCAGGGGGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAg                                                                <  1:358809/93‑1 (MQ=255)

     gATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAg                                                                <  1:2409526/93‑1 (MQ=255)

       tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAggg                                                              <  1:4977672/93‑1 (MQ=255)

         cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGga                                                            <  2:1555134/93‑1 (MQ=255)

         cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGga                                                            <  1:3250867/93‑1 (MQ=255)

           cAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGgaga                                                          >  2:3621695/1‑93 (MQ=255)

             gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCCAGGGGAGaaa                                                        >  2:3259024/1‑93 (MQ=255)

             gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGaaa                                                        >  1:3562047/1‑93 (MQ=255)

             gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGaaa                                                        >  1:2748423/1‑93 (MQ=255)

             gATGCTAACCTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGaaa                                                        >  2:3165024/1‑93 (MQ=255)

              aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGaaaa                                                       >  1:5405366/1‑93 (MQ=255)

               tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAAc                                                      <  1:1910627/93‑1 (MQ=255)

               tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAAc                                                      <  1:75657/93‑1 (MQ=255)

                gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACt                                                     >  1:735500/1‑93 (MQ=255)

                 cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACtt                                                    >  2:1911115/1‑93 (MQ=255)

                  tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGGAAAATTa                                                   >  2:1425346/1‑93 (MQ=255)

                  tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTa                                                   >  1:4514951/1‑93 (MQ=255)

                  tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTa                                                   <  2:1311989/93‑1 (MQ=255)

                   aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGGCCGGAAAATGC‑G‑G‑G‑CTTCCCAGGTCCCCCAAGGGGAGAAAAATTAg                                                  >  1:3709030/1‑93 (MQ=255)

                   aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCCAGGGGAGAAAACTTAg                                                  >  1:57982/1‑93 (MQ=255)

                   aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAg                                                  <  1:1240149/93‑1 (MQ=255)

                   aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCACGTCCCTCGAGGGGAGAAAACTTAg                                                  >  2:2669337/1‑93 (MQ=255)

                    aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAgg                                                 >  2:2210130/1‑93 (MQ=255)

                    aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAgg                                                 >  2:4737667/1‑93 (MQ=255)

                    aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAgg                                                 <  1:734334/93‑1 (MQ=255)

                         aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCctc                                            <  2:4100055/93‑1 (MQ=255)

                         aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCctc                                            <  2:4575359/93‑1 (MQ=255)

                           tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTa                                          <  2:5096707/93‑1 (MQ=255)

                           tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTa                                          <  1:157754/93‑1 (MQ=255)

                             tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg                                        >  2:3903490/1‑93 (MQ=255)

                              cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg                                       <  1:144459/93‑1 (MQ=255)

                              cagtcagGGAGTGGCTGGTACATATAGGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg                                       <  1:48411/93‑1 (MQ=255)

                              cagtcagGGAGTGGCTGGTAAATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg                                       >  2:612458/1‑93 (MQ=255)

                               agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATggg                                      <  2:5860345/93‑1 (MQ=255)

                                 tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt                                    <  1:5593173/93‑1 (MQ=255)

                                  cagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa                                   <  2:2937433/93‑1 (MQ=255)

                                   agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTATGGGCTCTATGGGCTAc                                  >  2:5323197/1‑93 (MQ=255)

                                   agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                  >  2:300605/1‑93 (MQ=255)

                                   agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                  >  1:1022326/1‑93 (MQ=255)

                                    gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa                                 <  2:4524696/93‑1 (MQ=255)

                                    gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa                                 >  1:2867184/1‑93 (MQ=255)

                                     ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa                                >  2:2806267/1‑93 (MQ=255)

                                     ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa                                >  1:1490301/1‑93 (MQ=255)

                                      gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                               >  2:6203017/1‑93 (MQ=255)

                                       aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg                              <  2:784676/93‑1 (MQ=255)

                                        gTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt                             <  2:1029025/93‑1 (MQ=255)

                                         tGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc                            <  1:4641122/93‑1 (MQ=255)

                                         tGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc                            <  2:3515467/93‑1 (MQ=255)

                                          ggCTGGTACATATATGACAAAAGCCGGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa                           <  1:4381459/93‑1 (MQ=255)

                                           gCTGGTACATATATGGCAAAAGCCCTGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt                          <  2:4185763/93‑1 (MQ=255)

                                           gCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt                          >  1:5840035/1‑93 (MQ=255)

                                            cTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt                         >  1:3887550/1‑93 (MQ=255)

                                            cTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt                         <  2:4329855/93‑1 (MQ=255)

                                             tGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                        >  1:6175808/1‑93 (MQ=255)

                                              ggTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                       >  1:3163164/1‑93 (MQ=255)

                                              ggTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                       >  1:1979286/1‑93 (MQ=255)

                                               gTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                      <  2:6021377/93‑1 (MQ=255)

                                               gTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                      >  1:4739789/1‑93 (MQ=255)

                                                tACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg                     <  1:1072851/93‑1 (MQ=255)

                                                tACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg                     >  1:2084534/1‑93 (MQ=255)

                                                 aCATATATGGCAAAAGCCCGGAAAAT‑CGG‑G‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg                    <  1:3516903/93‑1 (MQ=255)

                                                  cATATATGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                   >  1:2183591/1‑93 (MQ=255)

                                                  cATATATGGCAAAAGCCCGGAAAAT‑C‑C‑G‑GTCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                   <  2:3198378/93‑1 (MQ=255)

                                                   atatatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg                  <  2:3650772/93‑1 (MQ=255)

                                                   atatatGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg                  >  2:2555837/1‑93 (MQ=255)

                                                    tatatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                 >  2:3689507/1‑93 (MQ=255)

                                                    tatatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                 >  2:4433691/1‑93 (MQ=255)

                                                     atatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt                <  2:2579147/93‑1 (MQ=255)

                                                     atatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt                >  1:4040477/1‑93 (MQ=255)

                                                     atatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt                <  2:6142513/93‑1 (MQ=255)

                                                      tatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg               <  1:3819401/93‑1 (MQ=255)

                                                      tatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg               <  2:3407440/93‑1 (MQ=255)

                                                       atGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAGACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg              >  2:5776511/1‑93 (MQ=255)

                                                        tGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt             <  2:4065469/93‑1 (MQ=255)

                                                        tGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt             >  1:418309/1‑93 (MQ=255)

                                                         ggCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt            >  1:6151759/1‑93 (MQ=255)

                                                          gCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta           <  1:5123838/93‑1 (MQ=255)

                                                          gCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAATCATTATCGGCGATGGtta           <  2:6162393/93‑1 (MQ=255)

                                                           cAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat          >  2:4412451/1‑93 (MQ=255)

                                                           cAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat          >  1:3033190/1‑93 (MQ=255)

                                                            aaaaGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt         >  2:3235026/1‑93 (MQ=255)

                                                            aaaaGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt         >  1:3339664/1‑93 (MQ=255)

                                                             acaGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt        <  1:3193735/91‑1 (MQ=255)

                                                             aaaGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt        <  1:6009152/93‑1 (MQ=255)

                                                               aGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta      <  1:2082728/93‑1 (MQ=255)

                                                               aGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta      <  2:3096995/93‑1 (MQ=255)

                                                               aGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta      <  2:1297195/93‑1 (MQ=255)

                                                                gCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat     <  2:2165649/93‑1 (MQ=255)

                                                                 cccGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt    <  2:571537/93‑1 (MQ=255)

                                                                  ccGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg   <  2:567894/93‑1 (MQ=255)

                                                                  ccGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg   >  2:4676026/1‑93 (MQ=255)

                                                                  ccGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg   <  1:604184/93‑1 (MQ=255)

                                                                  ccGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg   >  1:888138/1‑93 (MQ=255)

                                                                   cGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCACGGGGAGAAAGCTTAGGGGCTGTATGGGCTACAAACTCATTATCGGGGATGGTCATTTTCTTGt  >  2:1746127/1‑93 (MQ=255)

                                                                   cGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGt  <  2:4440222/93‑1 (MQ=255)

AGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑T‑G‑C‑TCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT  >  NC_000913/3957471‑3957627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`