BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,957,560	+C	intergenic (‑129/‑732)	ppiC ← / → rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,957,558	1	.	C	100.0%	599.4 / NA	183	intergenic (‑127/‑734)	ppiC/rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (89/94); total (89/94)

Only 100 of 196 total aligned reads displayed.

AGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑T‑G‑C‑TCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATG  >  NC_000913/3957471‑3957645

aGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGT‑ccc                                                                                      >  1:3455571/1‑92 (MQ=255)

 gCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGT‑ccct                                                                                     <  2:4536311/93‑3 (MQ=255)

 gCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGT‑cccc                                                                                     >  2:2458756/1‑91 (MQ=255)

   aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGT‑ccctca                                                                                   >  1:1303296/1‑89 (MQ=255)

     gATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAg                                                                                  <  1:2409526/93‑1 (MQ=255)

     gATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAg                                                                                  >  2:2776763/1‑93 (MQ=255)

      aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAgg                                                                                 <  1:4788622/93‑1 (MQ=255)

       tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAggg                                                                                <  1:4977672/93‑1 (MQ=255)

       tCCGCACATGCTAACGTAATTGTAAGTCAGGTAGTGGCTGGTACATATATGGCAAACGCCAGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAggg                                                                                <  2:4478302/93‑1 (MQ=255)

         cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGga                                                                              <  2:1555134/93‑1 (MQ=255)

         cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGga                                                                              <  1:3250867/93‑1 (MQ=255)

             gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATTGCAAAAGCCCGGAAAATAC‑G‑G‑G‑CTTCGCAGGTCCCTCAAGGGGAGaaa                                                                          >  1:642179/1‑93 (MQ=255)

             gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGaaa                                                                          >  1:3562047/1‑93 (MQ=255)

             gATGCTAACCTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGaaa                                                                          >  2:3165024/1‑93 (MQ=255)

              aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGaaaa                                                                         >  1:4881539/1‑93 (MQ=255)

              aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGaaaa                                                                         >  1:5405366/1‑93 (MQ=255)

               tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAAc                                                                        >  2:2082728/1‑93 (MQ=255)

               tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAAc                                                                        <  1:75657/93‑1 (MQ=255)

                gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACt                                                                       >  1:735500/1‑93 (MQ=255)

                 cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATTGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACtt                                                                      >  2:4841320/1‑93 (MQ=255)

                  tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGGAAAATTa                                                                     >  2:1425346/1‑93 (MQ=255)

                  tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTa                                                                     >  1:4514951/1‑93 (MQ=255)

                  tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTa                                                                     <  2:1311989/93‑1 (MQ=255)

                   aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCCAGGGGAGAAAACTTAg                                                                    >  1:57982/1‑93 (MQ=255)

                   aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAg                                                                    <  1:1240149/93‑1 (MQ=255)

                   aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAC‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAg                                                                    <  2:4653147/93‑1 (MQ=255)

                    aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAgg                                                                   >  2:4737667/1‑93 (MQ=255)

                     cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAggg                                                                  >  1:6164108/1‑93 (MQ=255)

                         aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCctc                                                              <  1:3856960/93‑1 (MQ=255)

                          ttGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCctct                                                             >  2:3576236/1‑93 (MQ=255)

                           tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTa                                                            <  1:6038221/93‑1 (MQ=255)

                           tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTa                                                            <  1:157754/93‑1 (MQ=255)

                              cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg                                                         <  1:144459/93‑1 (MQ=255)

                                gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc                                                       <  2:258224/93‑1 (MQ=255)

                                   agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTATGGGCTCTATGGGCTAc                                                    >  2:5323197/1‑93 (MQ=255)

                                   agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                                    >  2:300605/1‑93 (MQ=255)

                                   agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                                    >  1:1022326/1‑93 (MQ=255)

                                   agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                                    >  1:4381899/1‑93 (MQ=255)

                                    gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa                                                   >  1:2867184/1‑93 (MQ=255)

                                     ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa                                                  >  2:2185812/1‑93 (MQ=255)

                                      gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                                                 >  2:6203017/1‑93 (MQ=255)

                                       aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGACAACTTAGGGCCTCTATGGGCTACAAAg                                                >  1:2441810/1‑93 (MQ=255)

                                       aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg                                                <  2:3791309/93‑1 (MQ=255)

                                       aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg                                                <  2:784676/93‑1 (MQ=255)

                                        gTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACCTAGGGCCTCTATGGGCTACAAAGt                                               >  2:3904460/1‑93 (MQ=255)

                                         tGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc                                              <  1:4641122/93‑1 (MQ=255)

                                          ggCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa                                             >  2:585892/1‑93 (MQ=255)

                                           gCTGGTACATATATGGCAAAAGCCCTGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt                                            <  2:4185763/93‑1 (MQ=255)

                                           gCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt                                            >  1:5840035/1‑93 (MQ=255)

                                            cTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt                                           <  2:4329855/93‑1 (MQ=255)

                                            cTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt                                           <  1:1915311/93‑1 (MQ=255)

                                            cTGGTACATATATGACAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt                                           <  2:2323548/93‑1 (MQ=255)

                                             tGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                                          >  2:4068137/1‑93 (MQ=255)

                                              ggTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                                         >  1:3163164/1‑93 (MQ=255)

                                              ggTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                                         <  2:5161539/93‑1 (MQ=255)

                                              ggTACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                                         >  1:5637528/1‑93 (MQ=255)

                                              gctACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                                         <  2:3289574/91‑1 (MQ=255)

                                                tACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg                                       <  1:1072851/93‑1 (MQ=255)

                                                tACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg                                       >  1:2084534/1‑93 (MQ=255)

                                                tACATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg                                       <  1:3696578/93‑1 (MQ=255)

                                                 aCATATATGGCAAAAGCCCGGAAAAT‑CGG‑G‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg                                      <  1:3516903/93‑1 (MQ=255)

                                                 aCATATATGGCAAAAGCCCGAAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg                                      <  2:107705/93‑1 (MQ=255)

                                                  cATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                                     <  2:5922720/93‑1 (MQ=255)

                                                  cATATATGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                                     >  1:3787687/1‑93 (MQ=255)

                                                  cATATATGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                                     >  1:2183591/1‑93 (MQ=255)

                                                  cATATATGGCAAAAGCCCGGAAAAT‑C‑C‑G‑GTCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                                     <  2:3198378/93‑1 (MQ=255)

                                                   atatatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg                                    <  2:101719/93‑1 (MQ=255)

                                                   atatatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg                                    <  2:3650772/93‑1 (MQ=255)

                                                   atatatGGCAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg                                    >  2:2555837/1‑93 (MQ=255)

                                                    tatatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                                   >  2:6090647/1‑93 (MQ=255)

                                                    tatatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                                   >  2:4433691/1‑93 (MQ=255)

                                                    tatatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                                   >  1:3946054/1‑93 (MQ=255)

                                                    tatatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                                   >  2:3689507/1‑93 (MQ=255)

                                                     atatGGCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt                                  <  2:6142513/93‑1 (MQ=255)

                                                         ggCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt                              >  2:2901976/1‑93 (MQ=255)

                                                          gCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta                             <  1:5123838/93‑1 (MQ=255)

                                                          gCAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAATCATTATCGGCGATGGtta                             <  2:6162393/93‑1 (MQ=255)

                                                           cAAAAGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat                            <  1:6063093/93‑1 (MQ=255)

                                                           cAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat                            >  1:3033190/1‑93 (MQ=255)

                                                           cAAAAGCCCGGAAAAT‑C‑C‑GGG‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat                            >  2:4412451/1‑93 (MQ=255)

                                                            aaaaGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt                           >  1:3339664/1‑93 (MQ=255)

                                                            aaaaGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt                           >  2:3235026/1‑93 (MQ=255)

                                                             acaGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt                          <  1:3193735/91‑1 (MQ=255)

                                                             aaaGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt                          <  1:4376920/93‑1 (MQ=255)

                                                               aGCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta                        <  2:3096995/93‑1 (MQ=255)

                                                                gCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat                       >  2:5723997/1‑93 (MQ=255)

                                                                gCCCGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat                       <  1:1986737/93‑1 (MQ=255)

                                                                  ccGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg                     >  2:4676026/1‑93 (MQ=255)

                                                                  ccGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg                     <  2:567894/93‑1 (MQ=255)

                                                                  ccGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg                     >  1:888138/1‑93 (MQ=255)

                                                                   cGGAAAAT‑C‑CGG‑G‑CTTCGCAGGTCCCTCACGGGGAGAAAGCTTAGGGGCTGTATGGGCTACAAACTCATTATCGGGGATGGTCATTTTCTTGt                    >  2:1746127/1‑93 (MQ=255)

                                                                                  ggcttCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAg         <  2:3442087/89‑1 (MQ=255)

                                                                                   gcttCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGc        <  1:2606831/90‑1 (MQ=255)

                                                                                    cttCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCg       >  1:5544678/3‑93 (MQ=255)

                                                                                        gCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGatat   >  1:1741517/1‑93 (MQ=255)

                                                                                        gCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGatat   <  1:3760503/93‑1 (MQ=255)

                                                                                        gCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGatat   <  1:5306011/93‑1 (MQ=255)

                                                                                         cAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATg  <  1:4169615/93‑1 (MQ=255)

                                                                                         cAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATg  >  2:3484087/1‑93 (MQ=255)

                                                                                         cAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATg  >  1:1495779/1‑93 (MQ=255)

AGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑C‑C‑T‑G‑C‑TCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATG  >  NC_000913/3957471‑3957645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`