Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,008,411	+C	coding (494/516 nt)	b4555 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,008,410	1	.	C	100.0%	297.6 / NA	92	A165P (GCT→CCT)	b4555	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (40/52);  total (40/52)

TCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AA‑‑‑‑‑CT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGAAA‑G‑CTGCATTATGGGCAGTGGC  >  NC_000913/4008346‑4008492                                                                              |                                                                                           tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tt                                                                      >  2:5367497/1‑93 (MQ=255) tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tt                                                                      <  1:3067422/93‑1 (MQ=255)  cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑ttt                                                                     <  1:3423220/93‑2 (MQ=255)  cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑ttt                                                                     >  2:2690426/1‑92 (MQ=255)  cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑ttt                                                                     >  2:2607369/1‑92 (MQ=255)   tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg                                                                    >  1:5995372/1‑91 (MQ=255)   tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg                                                                    >  2:4708075/1‑91 (MQ=255)   tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg                                                                    >  1:5951006/1‑91 (MQ=255)   tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg                                                                    >  2:1156237/1‑91 (MQ=255)   tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg                                                                    <  1:1051706/93‑3 (MQ=255)    ggAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttgg                                                                   >  2:630739/1‑90 (MQ=255)            tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa                                                           <  2:5970655/93‑1 (MQ=255)            tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa                                                           <  2:349093/93‑1 (MQ=255)            tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa                                                           <  1:100493/93‑1 (MQ=255)            tGGCGGGCGGCGTTTCAAAAAGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa                                                           >  2:6045798/1‑93 (MQ=255)             ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGAt                                                          <  2:2148939/93‑1 (MQ=255)             ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑AAGAAACCG‑GGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGAt                                                          <  2:1686766/93‑1 (MQ=255)              gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATg                                                         <  2:2236559/93‑1 (MQ=255)              gcgggcggCGTGTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATg                                                         <  2:790947/93‑1 (MQ=255)               cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGa                                                        <  1:5478423/93‑1 (MQ=255)                gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGaa                                                       <  1:2635131/93‑1 (MQ=255)                gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGaa                                                       <  2:3445771/93‑1 (MQ=255)                 ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac                                                      >  1:3993000/1‑93 (MQ=255)                 ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac                                                      <  2:2772791/93‑1 (MQ=255)                 ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac                                                      <  2:331868/93‑1 (MQ=255)                 ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac                                                      <  1:4957056/93‑1 (MQ=255)                  gcggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacg                                                     <  1:2957114/93‑1 (MQ=255)                  gcggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacg                                                     >  1:4814006/1‑93 (MQ=255)                   cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacga                                                    <  1:2546223/93‑1 (MQ=255)                   cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacga                                                    <  2:2166732/93‑1 (MQ=255)                    ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTT‑‑GTGACGGGATGAacgac                                                   >  2:5773184/1‑93 (MQ=255)                    ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac                                                   >  2:3119511/1‑93 (MQ=255)                    ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac                                                   <  2:4279944/93‑1 (MQ=255)                    ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac                                                   <  2:4498313/93‑1 (MQ=255)                    ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac                                                   >  2:5281397/1‑93 (MQ=255)                     gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgacg                                                  >  2:4300379/1‑93 (MQ=255)                      cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGc                                                 >  2:5938791/1‑93 (MQ=255)                       gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGcc                                                <  2:4808827/93‑1 (MQ=255)                       gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGcc                                                <  1:4418546/93‑1 (MQ=255)                         ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGa                                              <  2:2580522/89‑1 (MQ=255)                         ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGa                                              >  1:6270373/5‑93 (MQ=255)                         ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGa                                              >  2:5932837/5‑93 (MQ=255)                          tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaa                                             >  2:476989/4‑93 (MQ=255)                           caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa                                            <  2:723500/91‑1 (MQ=255)                           caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa                                            <  2:808001/91‑1 (MQ=255)                           caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa                                            <  1:4553544/91‑1 (MQ=255)                           caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa                                            >  1:4825534/3‑93 (MQ=255)                           caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa                                            <  1:5766444/91‑1 (MQ=255)                           caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa                                            >  1:4825533/3‑93 (MQ=255)                           caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa                                            <  1:3434171/91‑1 (MQ=255)                           caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa                                            <  1:995345/91‑1 (MQ=255)                            aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt                                           >  2:4130459/2‑93 (MQ=255)                            aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt                                           >  2:3678743/2‑93 (MQ=255)                            aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt                                           >  1:5825289/2‑93 (MQ=255)                            aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt                                           <  2:2946514/92‑1 (MQ=255)                            aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt                                           >  2:1526869/2‑93 (MQ=255)                             aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGCAATg                                          >  2:2085646/1‑93 (MQ=255)                             aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATg                                          >  1:290367/1‑93 (MQ=255)                              aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGc                                         <  1:2935716/93‑1 (MQ=255)                              aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGc                                         >  2:3848605/1‑93 (MQ=255)                              aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGc                                         <  1:6192030/93‑1 (MQ=255)                               aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt                                        <  1:3735094/93‑1 (MQ=255)                               aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt                                        <  1:1197056/93‑1 (MQ=255)                               aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt                                        >  2:6045723/1‑93 (MQ=255)                               aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt                                        <  2:193059/93‑1 (MQ=255)                                ggCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTg                                       <  1:5385678/93‑1 (MQ=255)                                ggCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTg                                       <  1:241840/93‑1 (MQ=255)                                ggCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTg                                       <  2:2269624/93‑1 (MQ=255)                                ggCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTg                                       <  1:4092752/93‑1 (MQ=255)                                                                  actgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATggg         <  1:1993023/89‑1 (MQ=255)                                                                  actgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATggg         <  1:2656113/89‑1 (MQ=255)                                                                  actgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATggg         >  1:2688598/5‑93 (MQ=255)                                                                  actgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATggg         >  2:5517684/5‑93 (MQ=255)                                                                  actgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAA‑GTCTGCATTATggg         >  1:3118034/5‑93 (MQ=255)                                                                   ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGc        <  2:1450881/90‑1 (MQ=255)                                                                   ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGc        >  2:5902450/4‑93 (MQ=255)                                                                   ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGc        <  1:844949/90‑1 (MQ=255)                                                                   ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGc        >  2:2214314/4‑93 (MQ=255)                                                                   ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGc        <  1:4035461/90‑1 (MQ=255)                                                                   ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGc        >  1:4618390/4‑93 (MQ=255)                                                                    tgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCa       >  1:1750273/3‑93 (MQ=255)                                                                     gggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAg      <  2:5597564/92‑1 (MQ=255)                                                                     gggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAg      >  2:2095688/2‑93 (MQ=255)                                                                      ggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGt     <  2:236929/93‑1 (MQ=255)                                                                      ggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGt     >  1:1525946/1‑93 (MQ=255)                                                                      ggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGt     <  2:3176408/93‑1 (MQ=255)                                                                        cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGTgc   >  1:720482/1‑92 (MQ=255)                                                                        cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGTgc   <  2:2350087/93‑2 (MQ=255)                                                                        cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGTgc   >  1:6162543/1‑92 (MQ=255)                                                                        cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGTgc   <  2:3528898/93‑2 (MQ=255)                                                                        cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGTgc   <  2:6200703/93‑2 (MQ=255)                                                                        cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGTgc   <  1:5539427/93‑2 (MQ=255)                                                                         tACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGTgcg  >  2:2417089/1‑91 (MQ=255)                                                                         tACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGG‑CTGCATTATGGGCAGTgcg  >  1:5748970/1‑91 (MQ=255)                                                                              |                                                                                           TCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AA‑‑‑‑‑CT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGAAA‑G‑CTGCATTATGGGCAGTGGC  >  NC_000913/4008346‑4008492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑