BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,008,421	+T	coding (504/516 nt)	b4555 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,008,421	1	.	T	100.0%	442.3 / NA	119	L168F (TTG→TTT)	b4555	hypothetical protein
Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (58/61); total (58/61)

Only 100 of 123 total aligned reads displayed.

TCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AA‑‑‑‑‑CT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGAAA‑G‑CTGCATTATGGGCAGTGGCCACCAGCGTCT  >  NC_000913/4008346‑4008503

 cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑ttt                                                                                 >  2:2607369/1‑92 (MQ=255)

 cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑ttt                                                                                 <  1:3423220/93‑2 (MQ=255)

  tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg                                                                                <  1:1051706/93‑3 (MQ=255)

  tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg                                                                                >  1:5951006/1‑91 (MQ=255)

  tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg                                                                                >  2:1156237/1‑91 (MQ=255)

   ggAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttgg                                                                               >  2:630739/1‑90 (MQ=255)

           tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa                                                                       <  2:5970655/93‑1 (MQ=255)

           tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa                                                                       <  1:100493/93‑1 (MQ=255)

            ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑AAGAAACCG‑GGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGAt                                                                      <  2:1686766/93‑1 (MQ=255)

             gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATg                                                                     <  2:2236559/93‑1 (MQ=255)

             gcgggcggCGTGTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATg                                                                     <  2:790947/93‑1 (MQ=255)

              cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGa                                                                    <  1:5478423/93‑1 (MQ=255)

               gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGaa                                                                   <  1:2635131/93‑1 (MQ=255)

               gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGaa                                                                   <  2:3445771/93‑1 (MQ=255)

                ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac                                                                  <  1:4957056/93‑1 (MQ=255)

                ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac                                                                  >  1:3993000/1‑93 (MQ=255)

                ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac                                                                  <  2:2772791/93‑1 (MQ=255)

                ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac                                                                  <  2:331868/93‑1 (MQ=255)

                 gcggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacg                                                                 <  1:2957114/93‑1 (MQ=255)

                  cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacga                                                                <  2:2166732/93‑1 (MQ=255)

                  cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacga                                                                <  1:2546223/93‑1 (MQ=255)

                   ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTT‑‑GTGACGGGATGAacgac                                                               >  2:5773184/1‑93 (MQ=255)

                   ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac                                                               >  2:3119511/1‑93 (MQ=255)

                   ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac                                                               <  2:4279944/93‑1 (MQ=255)

                   ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac                                                               <  2:4498313/93‑1 (MQ=255)

                   ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac                                                               >  2:5281397/1‑93 (MQ=255)

                    gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgacg                                                              >  2:4300379/1‑93 (MQ=255)

                     cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGc                                                             >  2:5938791/1‑93 (MQ=255)

                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGcc                                                            <  2:4808827/93‑1 (MQ=255)

                      gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGcc                                                            <  1:4418546/93‑1 (MQ=255)

                        ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGa                                                          >  2:5932837/5‑93 (MQ=255)

                        ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGa                                                          <  2:2580522/89‑1 (MQ=255)

                        ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGa                                                          >  1:6270373/5‑93 (MQ=255)

                         tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaa                                                         >  2:476989/4‑93 (MQ=255)

                          caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa                                                        <  2:723500/91‑1 (MQ=255)

                          caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa                                                        <  1:995345/91‑1 (MQ=255)

                          caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa                                                        <  1:3434171/91‑1 (MQ=255)

                          caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa                                                        >  1:4825533/3‑93 (MQ=255)

                          caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaa                                                        >  1:4825534/3‑93 (MQ=255)

                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt                                                       >  2:3678743/2‑93 (MQ=255)

                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt                                                       <  2:2946514/92‑1 (MQ=255)

                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt                                                       >  1:5825289/2‑93 (MQ=255)

                           aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt                                                       >  2:4130459/2‑93 (MQ=255)

                            aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGCAATg                                                      >  2:2085646/1‑93 (MQ=255)

                            aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATg                                                      >  1:290367/1‑93 (MQ=255)

                             aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGc                                                     <  1:6192030/93‑1 (MQ=255)

                             aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGc                                                     >  2:3848605/1‑93 (MQ=255)

                             aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGc                                                     <  1:2935716/93‑1 (MQ=255)

                              aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt                                                    <  1:1197056/93‑1 (MQ=255)

                              aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt                                                    <  1:3735094/93‑1 (MQ=255)

                              aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt                                                    <  2:193059/93‑1 (MQ=255)

                              aGGCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt                                                    >  2:6045723/1‑93 (MQ=255)

                               ggCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTg                                                   <  1:241840/93‑1 (MQ=255)

                               ggCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTg                                                   <  2:2269624/93‑1 (MQ=255)

                               ggCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTg                                                   <  1:5385678/93‑1 (MQ=255)

                               ggCCATGCGCTGGAAGCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTg                                                   <  1:4092752/93‑1 (MQ=255)

                                                                 actgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATggg                    >  2:5517684/5‑93 (MQ=255)

                                                                 actgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATggg                    >  1:2688598/5‑93 (MQ=255)

                                                                 actgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAA‑GTCTGCATTATggg                    >  1:3118034/5‑93 (MQ=255)

                                                                  ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGc                   <  2:1450881/90‑1 (MQ=255)

                                                                  ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGc                   <  1:844949/90‑1 (MQ=255)

                                                                  ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGc                   >  2:2214314/4‑93 (MQ=255)

                                                                  ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGc                   >  1:4618390/4‑93 (MQ=255)

                                                                  ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGc                   <  1:4035461/90‑1 (MQ=255)

                                                                   tgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCa                  >  1:1750273/3‑93 (MQ=255)

                                                                    gggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAg                 >  2:2095688/2‑93 (MQ=255)

                                                                    gggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAg                 <  2:5597564/92‑1 (MQ=255)

                                                                     ggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGt                <  2:236929/93‑1 (MQ=255)

                                                                     ggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGt                >  1:1525946/1‑93 (MQ=255)

                                                                       cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTgc              <  2:2350087/93‑2 (MQ=255)

                                                                       cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTgc              >  1:6162543/1‑92 (MQ=255)

                                                                       cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTgc              <  2:6200703/93‑2 (MQ=255)

                                                                       cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTgc              <  2:3528898/93‑2 (MQ=255)

                                                                       cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTgc              <  1:5539427/93‑2 (MQ=255)

                                                                        tACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTgcg             >  2:2417089/1‑91 (MQ=255)

                                                                        tACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTgcg             >  1:5748970/1‑91 (MQ=255)

                                                                            gccTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCgcacc         >  1:1019375/3‑93 (MQ=255)

                                                                            gccTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCgcacc         >  2:3680671/3‑93 (MQ=255)

                                                                            gccTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCgcacc         >  1:5659547/3‑93 (MQ=255)

                                                                             ccTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCgcacca        >  2:5429639/2‑93 (MQ=255)

                                                                             ccTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCgcacca        >  1:97290/2‑93 (MQ=255)

                                                                              cTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAg       <  1:5857761/93‑1 (MQ=255)

                                                                              cTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAg       <  1:5209391/93‑1 (MQ=255)

                                                                              cTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAg       >  1:2048371/1‑93 (MQ=255)

                                                                               tGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAATG‑CTGCATTATGGGCAGTGCGCACCAGc      >  1:2632995/1‑93 (MQ=255)

                                                                               tGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGc      >  2:351796/1‑93 (MQ=255)

                                                                               tGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGc      >  1:6103955/1‑93 (MQ=255)

                                                                               tGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGc      >  1:1680921/1‑93 (MQ=255)

                                                                               tGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGc      <  1:1744278/93‑1 (MQ=255)

                                                                               tGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGc      >  2:3305289/1‑93 (MQ=255)

                                                                               tGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGc      <  2:3465136/93‑1 (MQ=255)

                                                                                gAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGGAAG‑G‑CTGCATTATGGGCAGGGCGCACCACCg     >  2:5814954/1‑93 (MQ=255)

                                                                                gAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCg     <  1:4711253/93‑1 (MQ=255)

                                                                                gAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCg     <  2:5172308/93‑1 (MQ=255)

                                                                                gAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCg     >  2:2994525/1‑93 (MQ=255)

                                                                                gAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCg     >  1:310058/1‑93 (MQ=255)

                                                                                 aaGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGt    <  1:4623016/93‑1 (MQ=255)

                                                                                  aGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTc   >  1:4773736/1‑93 (MQ=255)

                                                                                  aGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTc   >  1:1787620/1‑93 (MQ=255)

                                                                                   ggATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCt  <  1:5903364/93‑1 (MQ=255)

TCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AA‑‑‑‑‑CT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGAAA‑G‑CTGCATTATGGGCAGTGGCCACCAGCGTCT  >  NC_000913/4008346‑4008503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`