| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,349,220 | (G)7→9 | intergenic (‑157/+211) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase (NADH)/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,349,213 | 1 | . | G | 90.4% | 226.1 / 20.1 | 83 | intergenic (‑150/+218) | fabI/ycjD | enoyl‑[acyl‑carrier‑protein] reductase (NADH)/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (2/6); new base G (17/58); total (19/64) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.72e-01 | |||||||||||
| * | NC_000913 | 1,349,213 | 2 | . | G | 81.9% | 203.8 / 46.9 | 83 | intergenic (‑150/+218) | fabI/ycjD | enoyl‑[acyl‑carrier‑protein] reductase (NADH)/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (5/10); new base G (14/54); total (19/64) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01 | |||||||||||
Only 100 of 115 total aligned reads displayed.
TAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑G‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCA > NC_000913/1349122‑1349292 || tAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g < 1:6056945/93‑1 (MQ=255) aGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑g > 1:2415666/1‑93 (MQ=255) aGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑g > 2:3387342/1‑93 (MQ=255) aGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑g > 2:5388314/1‑93 (MQ=255) tAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg < 1:4704316/93‑1 (MQ=255) tAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg < 1:1221315/93‑1 (MQ=255) tAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg > 1:783208/1‑93 (MQ=255) aaaCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑g < 1:4597534/93‑1 (MQ=255) aaaCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑g < 2:3373784/93‑1 (MQ=255) aaaCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑g > 1:1006415/1‑93 (MQ=255) aaCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑gg < 2:2121958/93‑1 (MQ=255) aaCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑gg < 2:1236626/93‑1 (MQ=255) aaCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑gg > 2:5626174/1‑93 (MQ=255) aaCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑gg > 2:5998091/1‑93 (MQ=255) aCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑ggg < 1:3449201/93‑1 (MQ=255) aCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑ggg < 1:616245/93‑1 (MQ=255) aCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑ggg < 1:1135277/93‑1 (MQ=255) aCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑ggg < 2:5545302/93‑1 (MQ=255) aCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑ggg > 2:736367/1‑93 (MQ=255) aCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCGGCG‑‑G‑CA‑‑g‑‑ggg‑‑ggg > 1:1177168/1‑93 (MQ=255) cAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑gggg > 1:4029118/1‑92 (MQ=255) aGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑ggggg > 1:4044465/1‑91 (MQ=255) aGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑ggggg > 1:5832396/1‑91 (MQ=255) gTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑gggggg > 2:5249082/1‑90 (MQ=255) gTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑G‑‑GGG‑‑GGg‑‑ggc < 2:2429656/93‑1 (MQ=255) gTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑G‑‑GGG‑‑GGg‑‑ggc > 2:642843/1‑93 (MQ=255) aCGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑G‑‑GGG‑‑GGg‑‑ggcgg > 1:29413/1‑91 (MQ=255) gAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑G‑‑GGG‑‑GGg‑‑ggcgctt > 2:237707/1‑89 (MQ=255) gAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑G‑‑GGG‑‑GGg‑‑ggcgctt > 2:4956103/1‑89 (MQ=255) aaCGGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAG‑G‑‑GGG‑‑GGG‑‑CGC‑tttt > 1:942791/1‑93 (MQ=255) aaGATAAACGGTTATTATAATCACCCT‑GGCTGTCAGTAGTTATAGTTGCCAGGTCGGACC‑GGAGCAGGATGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTc < 2:2853589/92‑1 (MQ=255) gATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTccc > 1:4095644/1‑93 (MQ=255) aTAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTtccc > 1:979596/1‑93 (MQ=255) tAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCt < 1:1352558/93‑1 (MQ=255) aaaCGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTTCCCTc > 2:771180/1‑93 (MQ=255) aaCGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTccccccc > 1:2040629/1‑90 (MQ=255) aCGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTTCCCTCAc > 2:1813759/1‑93 (MQ=255) cGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTTCCCCCAcc > 2:756075/1‑93 (MQ=255) ggTTATTATAGTCACCCT‑GGCTGTGAGTAGTTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCAccc < 1:4288771/93‑1 (MQ=255) ggTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCAccc < 2:5645069/93‑1 (MQ=255) ggTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAG‑G‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCt > 1:4233108/1‑93 (MQ=255) gTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTTCccccccccc > 1:5659498/1‑92 (MQ=255) tttttaaAATCAACCTGGGCTGT‑AATAGCTAAAGTTCCCCGGTCCGGCCGGGACCGGCCTGGG‑‑GAGG‑‑G‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTa < 2:3362634/90‑1 (MQ=255) ttattaTAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTa < 1:2971150/93‑1 (MQ=255) tattatAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTTCccccccccccc > 1:1538658/1‑90 (MQ=255) attatAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑c < 1:4472311/93‑1 (MQ=255) attatAATCAACCT‑GACTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑c < 2:5962353/93‑1 (MQ=255) tataATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAG‑G‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCct > 1:3177827/1‑93 (MQ=255) tataATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAG‑G‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCct < 2:3024143/93‑1 (MQ=255) taATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCctc < 2:3142863/93‑1 (MQ=255) aTCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCtctc < 1:4562490/93‑1 (MQ=39) tCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTcc < 2:4425908/93‑1 (MQ=39) cAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTccc > 1:2143565/1‑93 (MQ=39) cT‑GGCTGTGATTAGCTATAGTTCCCGGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCaga < 2:2759138/93‑1 (MQ=37) cT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTTTCCCCCCCCCC‑A‑CCCCCTccccccc > 1:3820194/1‑90 (MQ=255) cT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTTCCCCCCCCCCA‑A‑ACCCCTCCCCcga > 2:3030242/1‑93 (MQ=255) cT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCaga < 2:2504697/93‑1 (MQ=38) ggCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAgg < 1:3120308/93‑1 (MQ=38) ggCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAgg < 1:5911470/93‑1 (MQ=38) gCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAggg < 1:3390771/93‑1 (MQ=38) cTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAgggg < 1:778632/93‑1 (MQ=37) cTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAgggg < 2:3580948/93‑1 (MQ=37) cTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAgggg < 1:5869653/93‑1 (MQ=37) tgtgAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGCTTTTTCCCCCCCCCCTA‑A‑CCCTCCTCCCACCgggg > 2:5825638/1‑93 (MQ=255) tgtgAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCCCACCCCC‑A‑CCCCCTCCCCCCAggggg > 2:2987704/1‑92 (MQ=255) gtgAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCg < 1:4909907/93‑1 (MQ=37) tgAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGa < 2:5278214/93‑1 (MQ=37) tgAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGa < 1:2081604/93‑1 (MQ=37) tgAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGa < 2:3472245/93‑1 (MQ=37) gAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAg < 1:6144376/93‑1 (MQ=37) gAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAg < 1:1256274/93‑1 (MQ=37) gAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAg < 1:1196156/93‑1 (MQ=37) gAGTAGCTATAGTTGACAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAg < 2:2944012/93‑1 (MQ=25) aGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAgg < 1:4738844/93‑1 (MQ=37) aGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAgg < 1:1943569/93‑1 (MQ=37) gTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCGGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAggg < 2:3151092/93‑1 (MQ=25) tggttataTTTGCCAGTCCCGACG‑GGGGCAGCCTGCGCCG‑GG‑‑G‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAgggg < 2:2480520/89‑1 (MQ=9) tAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAgggg < 2:5475066/93‑1 (MQ=25) aGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGa < 2:4054790/93‑1 (MQ=25) gCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGCTTTTTCCCCCCCCCCCA‑ACCCCTCCCCCCCGgggggggggggg > 1:5031659/1‑93 (MQ=255) gCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGAc < 2:768334/93‑1 (MQ=25) gtataGTTGCCAGGGCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGAcc < 2:5496529/92‑1 (MQ=21) cTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGAcc < 1:1589656/93‑1 (MQ=25) ataGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGCTTTTTCCCCCCCCCCCACC‑CCCCCCCCCCAGAGggggggggggcgc > 1:2789774/1‑90 (MQ=255) aGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTAt < 1:2362574/93‑1 (MQ=25) gTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTAtt < 2:818272/93‑1 (MQ=25) ttGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATtg < 1:3725250/93‑1 (MQ=25) tGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATtgt < 2:326072/93‑1 (MQ=25) tCCGACC‑GGAGCAGGCTGCG‑‑G‑CAG‑G‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAatat < 2:3909769/93‑1 (MQ=255) cgcGACC‑GGAGCAGGGTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCGCCCTA‑A‑CCCCGCCCCCAGAGGGGCGAGGGGACCTGACTGGGCAAata < 2:5790339/91‑1 (MQ=16) ccGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAatat < 1:334463/93‑1 (MQ=25) ccGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAatat < 1:1620376/93‑1 (MQ=25) caCC‑GGAGCAGTCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTg < 2:6308122/92‑1 (MQ=21) cc‑GGAGCAGGCTGCG‑‑G‑CA‑‑G‑‑GGGGTGGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGtt < 1:342607/93‑1 (MQ=25) gAGCAGGCTGCG‑‑G‑CA‑‑GGAGGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTAcc < 2:3517896/93‑1 (MQ=25) gCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTAcccc < 2:84701/93‑1 (MQ=25) cAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑T‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCa < 2:3026622/93‑1 (MQ=25) cAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCa < 2:5783191/93‑1 (MQ=25) cAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCa < 1:5772779/93‑1 (MQ=25) cAGGCTGCG‑‑G‑CA‑‑G‑‑GGG‑‑GGGGCCGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCa < 2:5436536/93‑1 (MQ=25) || TAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑G‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCA > NC_000913/1349122‑1349292 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |