BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,640,416	(T)_5→6	intergenic (+325/+97)	cspF → / ← b1559	CspF/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,640,411	1	.	T	100.0%	621.7 / NA	165	intergenic (+320/+102)	cspF/b1559	CspF/hypothetical protein
Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (75/90); total (75/90)

Only 100 of 182 total aligned reads displayed.

TAATAAGTTAACAGACATGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTAC‑TTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAACATCATGTCGCCATCT  >  NC_000913/1640319‑1640498

 aataaGTTAACAGACATGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTAC‑t                                                                                        >  1:5792435/1‑93 (MQ=255)

  ataaGTTAACAGACATGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTAC‑tt                                                                                       <  2:1564587/93‑1 (MQ=255)

   taaGTTAACAGACATGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGGTTTCTAC‑ttt                                                                                      >  1:3363292/1‑93 (MQ=255)

     aGTTAACAGACATGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTAC‑ttttt                                                                                    <  1:5064507/93‑1 (MQ=255)

     aGTTAACAGACATGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTAC‑ttttt                                                                                    >  1:4452909/1‑93 (MQ=255)

      gTTAACAGACATGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTAC‑tttttt                                                                                   >  1:2394973/1‑92 (MQ=255)

         aaCAGACATGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTAC‑ttttttctt                                                                                >  1:3087153/1‑89 (MQ=255)

         aaCAGACATGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTAC‑ttttttctt                                                                                <  1:3225602/93‑5 (MQ=255)

         aaCAGACATGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTAC‑ttttttctt                                                                                <  2:2349572/93‑5 (MQ=255)

         aaCAGACATGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTAC‑ttttttctt                                                                                >  2:2670645/1‑89 (MQ=255)

           cAGACATGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTaa                                                                               <  2:3107484/93‑1 (MQ=255)

            aGACATGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAAc                                                                              >  2:4814396/1‑93 (MQ=255)

            aGACATGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAAc                                                                              >  2:2984265/1‑93 (MQ=255)

            aGACATGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAAc                                                                              >  2:1714946/1‑93 (MQ=255)

               cATGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTc                                                                           >  1:2946877/1‑93 (MQ=255)

                aTGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCg                                                                          >  2:2859460/1‑93 (MQ=255)

                aTGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCg                                                                          <  2:3033718/93‑1 (MQ=255)

                  gAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCggg                                                                        <  1:1143197/93‑1 (MQ=255)

                   aGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGt                                                                       <  2:5081435/93‑1 (MQ=255)

                    gTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGta                                                                      <  2:442980/93‑1 (MQ=255)

                       ccGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATAc                                                                   >  1:1229177/1‑93 (MQ=255)

                       ccGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATAc                                                                   <  1:1854012/93‑1 (MQ=255)

                       ccGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATAc                                                                   >  2:5607039/1‑93 (MQ=255)

                         gggATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACaa                                                                 >  1:2604730/1‑93 (MQ=255)

                           gATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAg                                                               >  2:5528513/1‑93 (MQ=255)

                           gATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAg                                                               >  1:1533908/1‑93 (MQ=255)

                            aTGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGc                                                              <  2:3703619/93‑1 (MQ=255)

                             tGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAGCCCGCTCATCAGCGGGTTTTCTACGTTTTTCTTAACGTCGGGTATACAAAGcc                                                             <  2:2060371/93‑1 (MQ=255)

                              gagaTTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGccc                                                            <  1:2768665/93‑1 (MQ=255)

                               agaTTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCa                                                           <  2:4368100/93‑1 (MQ=255)

                               agaTTCAACATTACCATTGCCCCA‑TTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCAt                                                          <  1:176591/93‑1 (MQ=255)

                                gaTTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCAt                                                          >  1:3780418/1‑93 (MQ=255)

                                gaTTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCAt                                                          <  1:1351022/93‑1 (MQ=255)

                                 aTTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATc                                                         <  1:3243095/93‑1 (MQ=255)

                                 aTTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATc                                                         <  2:38117/93‑1 (MQ=255)

                                 aTTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATc                                                         <  2:1105734/93‑1 (MQ=255)

                                   tCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGt                                                       <  2:806705/93‑1 (MQ=255)

                                    cAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGtt                                                      >  2:5193543/1‑93 (MQ=255)

                                      aCATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGa                                                    <  1:45034/93‑1 (MQ=255)

                                      aCATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGa                                                    >  2:4083854/1‑93 (MQ=255)

                                      aCATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGa                                                    <  2:2566996/93‑1 (MQ=255)

                                        aTTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGaaa                                                  >  1:3686297/1‑93 (MQ=255)

                                         ttACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGaaaa                                                 >  2:573130/1‑93 (MQ=255)

                                           aCCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGTGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGaaaaaa                                               <  2:3438292/93‑1 (MQ=255)

                                           aCCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGaaaaaa                                               >  1:5875600/1‑93 (MQ=255)

                                             cATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAAtt                                             >  2:4526400/1‑93 (MQ=255)

                                              aTTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAAttt                                            <  1:3043190/93‑1 (MQ=255)

                                                 gCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTAt                                         <  1:1966318/93‑1 (MQ=255)

                                                   cccATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGGATACAAAGCCCATCGTTGAAAAAATTTTATcc                                       >  1:5441879/1‑93 (MQ=255)

                                                    ccATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCa                                      <  2:3012426/93‑1 (MQ=255)

                                                    ccATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCa                                      <  2:5726069/93‑1 (MQ=255)

                                                     cATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCat                                     >  2:4855571/1‑93 (MQ=255)

                                                      aTTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCata                                    >  2:2177664/1‑93 (MQ=255)

                                                      aTTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCata                                    <  1:2184254/93‑1 (MQ=255)

                                                      aTTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCata                                    <  2:1700399/93‑1 (MQ=255)

                                                      aTTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCata                                    >  2:5368353/1‑93 (MQ=255)

                                                      aTTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCata                                    <  1:5523665/93‑1 (MQ=255)

                                                       tttAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCatat                                   >  1:5607864/1‑93 (MQ=255)

                                                       tttAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCatat                                   <  1:2654662/93‑1 (MQ=255)

                                                        ttAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATAtt                                  >  2:4699077/1‑93 (MQ=255)

                                                           aaGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATAttttt                               <  1:2524875/93‑1 (MQ=255)

                                                            aGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATAtttttt                              >  1:1669208/1‑93 (MQ=255)

                                                            aGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATAtttttt                              >  2:5262785/1‑93 (MQ=255)

                                                            aGCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATAtttttt                              <  2:4593576/93‑1 (MQ=255)

                                                             gCACAAAACCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATTCATAttttttt                             >  2:1151732/1‑92 (MQ=255)

                                                                 aaaaCCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGaaaa                         >  1:6158287/1‑93 (MQ=255)

                                                                 aaaaCCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGaaaa                         >  1:3569132/1‑93 (MQ=255)

                                                                  aaaCCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGaaaaa                        <  1:588359/93‑1 (MQ=255)

                                                                  aaaCCCGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGaaaaa                        >  2:3299977/1‑93 (MQ=255)

                                                                     cccGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGc                     <  1:3287922/93‑1 (MQ=255)

                                                                     cccGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGc                     >  1:2416039/1‑93 (MQ=255)

                                                                      ccGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGGAAAATGCa                    >  2:1501122/1‑93 (MQ=255)

                                                                      ccGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCa                    <  1:4664572/93‑1 (MQ=255)

                                                                      ccGCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGGATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCa                    >  2:1943721/1‑93 (MQ=255)

                                                                        gCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCaaa                  >  1:5656607/1‑93 (MQ=255)

                                                                        gCTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCaaa                  <  2:1381573/93‑1 (MQ=255)

                                                                         cTCATCAGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAAc                 >  1:434357/1‑93 (MQ=255)

                                                                         cTCATCAGCGGGCTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTTAAAAAATTTTATCCATATTTTTTGAAAAATGCAAAc                 >  2:4955273/1‑93 (MQ=255)

                                                                           catcaGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAAcat               <  2:1232299/93‑1 (MQ=255)

                                                                           catcaGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAAcat               >  1:2101693/1‑93 (MQ=255)

                                                                            atcaGCGTGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAAcatc              <  1:5128520/93‑1 (MQ=255)

                                                                            atcaGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAAcatc              <  1:1501231/93‑1 (MQ=255)

                                                                            atcaGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAAcatc              <  2:3750277/93‑1 (MQ=255)

                                                                             tcaGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAAcatca             >  2:3146204/1‑93 (MQ=255)

                                                                             tcaGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAAcatca             >  2:2328748/1‑93 (MQ=255)

                                                                              caGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAAcatcat            <  1:3701982/93‑1 (MQ=255)

                                                                              caGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAAcatcat            <  1:41672/93‑1 (MQ=255)

                                                                              caGCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAAcatcat            <  1:918609/93‑1 (MQ=255)

                                                                                gCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAACATCATGt          <  2:4344787/93‑1 (MQ=255)

                                                                                gCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAACATCATGt          <  2:4171801/93‑1 (MQ=255)

                                                                                gCGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAACATCATGt          >  1:811436/1‑93 (MQ=255)

                                                                                gCGGGTTTGCTACTTTTTTCATAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAACATCATGt          >  2:6163916/1‑93 (MQ=255)

                                                                                gCGGGGTTTCTACTTTTTTCTTAACGTCGGGGATACAAAGCCCCTCGTTGAAAAAATTTTATCCCTATTTTTTGAAAAATGCAAACATCATGt          >  2:557512/1‑93 (MQ=255)

                                                                                 cGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAACATCATGTc         <  1:1374913/93‑1 (MQ=255)

                                                                                 cGGGTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAACATCATGTc         <  1:4055460/93‑1 (MQ=255)

                                                                                    gTTTTCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAACATCATGTCGcc      >  2:4252605/1‑93 (MQ=255)

                                                                                     ttttCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAACATCATGTCGCCa     >  1:5432143/1‑93 (MQ=255)

                                                                                       ttCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAACATCATGTCGCCATc   <  2:357876/93‑1 (MQ=255)

                                                                                       ttCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAACATCATGTCGCCATc   <  2:18152/93‑1 (MQ=255)

                                                                                        tCTACTTTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAACATCATGTCGCCATCt  >  1:1547391/1‑93 (MQ=255)

TAATAAGTTAACAGACATGAGTCCCGGGATGAGATTCAACATTACCATTGCCCCATTTAAAGCACAAAACCCGCTCATCAGCGGGTTTTCTAC‑TTTTTCTTAACGTCGGGTATACAAAGCCCATCGTTGAAAAAATTTTATCCATATTTTTTGAAAAATGCAAACATCATGTCGCCATCT  >  NC_000913/1640319‑1640498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`