Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,729,373 +C intergenic (‑195/+247) rrsG ← / ← clpB 16S ribosomal RNA/ClpB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,729,3711.C99.2% 405.7 / ‑3.6 131intergenic (‑193/+249)rrsG/clpB16S ribosomal RNA/ClpB
Reads supporting (aligned to +/- strand):  ref base . (1/0);  new base C (64/66);  total (65/66)
Fisher's exact test for biased strand distribution p-value = 4.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.51e-01

Only 100 of 133 total aligned reads displayed.

ATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑T‑C‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTT  >  NC_000913/2729309‑2729458
                                                                |                                                                                        
aTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCtt                                                            >  2:2580319/1‑93 (MQ=9)
aTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCtt                                                            <  1:3491938/93‑1 (MQ=12)
aTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCtt                                                            <  1:4473181/93‑1 (MQ=12)
aTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCtt                                                            <  1:1456466/93‑1 (MQ=9)
 ttGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCttt                                                           >  2:1787237/1‑93 (MQ=12)
 ttGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCttt                                                           <  2:4367297/93‑1 (MQ=16)
   gTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTtc                                                         <  2:1940325/93‑1 (MQ=255)
     tAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTtctc                                                       >  2:3617821/1‑93 (MQ=255)
     tAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTtctc                                                       <  2:5770373/93‑1 (MQ=255)
     tAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTtctc                                                       >  1:1290286/1‑93 (MQ=255)
       aaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTg                                                     <  2:3723924/93‑1 (MQ=255)
        agagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGt                                                    >  2:4284737/1‑93 (MQ=255)
         gagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGtt                                                   <  2:2137626/93‑1 (MQ=255)
         gagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGtt                                                   >  1:5096206/1‑93 (MQ=255)
         gagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGtt                                                   >  2:4164340/1‑93 (MQ=255)
         gagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGGGGGCATAATACGCCT‑TCC‑CGCTACAGAGCCAAGCATTTCTTTGCTTTTCTCTGtt                                                   >  2:5090069/1‑93 (MQ=14)
         gagCAGTGACGCTTCGCTTTTTCTCAGCGGCGCGGGGGGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGtt                                                   >  2:5179527/1‑93 (MQ=14)
          agCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg                                                  <  2:4698338/93‑1 (MQ=255)
          agCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg                                                  <  1:3663471/93‑1 (MQ=255)
          agCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg                                                  <  2:3048413/93‑1 (MQ=255)
          agCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg                                                  <  1:3268243/93‑1 (MQ=255)
           gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga                                                 >  1:6248397/1‑93 (MQ=255)
           gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga                                                 >  1:2845166/1‑93 (MQ=255)
           gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga                                                 <  2:6303884/93‑1 (MQ=255)
           gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga                                                 >  2:5667541/1‑93 (MQ=255)
           gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga                                                 >  1:1710613/1‑93 (MQ=255)
            cAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTgag                                                <  2:2898044/93‑1 (MQ=255)
            cAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTgag                                                <  1:6307164/93‑1 (MQ=255)
            cAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑T‑CACGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTgag                                                >  1:2749372/1‑93 (MQ=255)
             aGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTgaga                                               <  1:1093410/93‑1 (MQ=255)
              gTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAt                                              <  2:2522447/93‑1 (MQ=255)
              gTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAt                                              <  1:3706435/93‑1 (MQ=255)
               tGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAtt                                             <  2:2481788/93‑1 (MQ=255)
               tGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAtt                                             <  1:3961571/93‑1 (MQ=255)
               tGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAtt                                             <  1:2015731/93‑1 (MQ=255)
               tGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAtt                                             >  1:5681273/1‑93 (MQ=255)
                gCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtc                                            >  1:3544068/1‑93 (MQ=255)
                gCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtc                                            >  1:5452936/1‑93 (MQ=255)
                gCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtc                                            >  1:5452935/1‑93 (MQ=255)
                gCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtc                                            <  1:752432/93‑1 (MQ=255)
                gCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtc                                            <  1:1831359/93‑1 (MQ=255)
                gCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtc                                            >  1:4279153/1‑93 (MQ=255)
                 ccGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtct                                           >  2:380974/1‑93 (MQ=255)
                  cgcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtctc                                          >  1:1677259/1‑93 (MQ=255)
                   gcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCa                                         <  1:3657297/93‑1 (MQ=255)
                   gcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCa                                         <  2:24678/93‑1 (MQ=255)
                    cttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAg                                        >  1:3357623/1‑93 (MQ=255)
                    cttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAg                                        <  1:4000411/93‑1 (MQ=255)
                    cttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAg                                        >  2:2322347/1‑93 (MQ=255)
                    cttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAg                                        <  1:4856356/93‑1 (MQ=255)
                     ttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAgg                                       >  1:5651444/1‑93 (MQ=255)
                     ttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAgg                                       <  2:654729/93‑1 (MQ=255)
                     ttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAgg                                       >  2:2585364/1‑93 (MQ=255)
                     ttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAgg                                       <  1:6002512/93‑1 (MQ=255)
                     ttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAgg                                       <  2:6038826/93‑1 (MQ=255)
                     ttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATAAGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAgg                                       >  2:790503/1‑93 (MQ=255)
                      tcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGga                                      <  2:721489/93‑1 (MQ=255)
                        gcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgaga                                    <  2:4536545/93‑1 (MQ=255)
                        gcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgaga                                    >  2:2941430/1‑93 (MQ=255)
                         cttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGaa                                   <  1:2337072/93‑1 (MQ=255)
                         cttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGaa                                   >  1:5828663/1‑93 (MQ=255)
                         cttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGaa                                   <  1:2387625/93‑1 (MQ=255)
                          tttttCTCAGCGGCGCGGGGTGTGCCTAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAc                                  >  2:4467914/1‑93 (MQ=255)
                           ttttCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAcc                                 >  2:4139584/1‑93 (MQ=255)
                            tttCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CTCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAccc                                <  1:6045409/93‑1 (MQ=255)
                             ttCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAcccc                               <  1:4429003/93‑1 (MQ=255)
                                tcggcggcgCGGGGTGTGCATAATACGCCTCC‑C‑CGCTACAGAGTCAAGCTTTTCTTTGTTTTTCTCTTTTGAGATTCTCGGGAGACCCccgcc                            <  2:1207865/90‑1 (MQ=18)
                                tcAGCGGCGCGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCccgcc                            >  1:3853617/1‑93 (MQ=255)
                                      gcgcGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcg                      <  1:6286566/93‑1 (MQ=255)
                                      gcgcGGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcg                      <  1:4399841/93‑1 (MQ=255)
                                       ggcgGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcgg                     <  2:3500555/92‑1 (MQ=255)
                                       cgcgGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcgg                     >  1:5044586/1‑93 (MQ=255)
                                        gcgGGGTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggc                    <  2:3669010/93‑1 (MQ=255)
                                          ggggTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggcgg                  >  2:6104552/1‑93 (MQ=255)
                                           gggTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCggcggc                 >  2:2943954/1‑93 (MQ=255)
                                            ggTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGgcggcg                <  2:948369/93‑1 (MQ=255)
                                            ggTGTGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGgcggcg                >  2:5461936/1‑93 (MQ=255)
                                             gtgtGCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgt               <  2:3329151/93‑1 (MQ=255)
                                              tgtgCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtg              >  1:5327450/1‑93 (MQ=255)
                                              tgtgCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtg              >  1:2247904/1‑93 (MQ=255)
                                              tgtgCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtg              <  1:2312536/93‑1 (MQ=255)
                                              tgtgCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtg              >  1:352557/1‑93 (MQ=255)
                                               gtgCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtgt             <  1:2388956/93‑1 (MQ=255)
                                                tgCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGtt            >  1:445144/1‑93 (MQ=255)
                                                 gCATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGttt           >  2:4679507/1‑93 (MQ=255)
                                                  cATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTg          >  2:4684681/1‑93 (MQ=255)
                                                  cATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTg          >  1:924208/1‑93 (MQ=255)
                                                  cATAATACGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGCTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTg          <  1:4431478/93‑1 (MQ=255)
                                                   ataataCGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGc         <  1:428709/93‑1 (MQ=255)
                                                   ataataCGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGc         <  1:2969643/93‑1 (MQ=255)
                                                   ataataCGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGc         >  1:6031155/1‑93 (MQ=255)
                                                    taataCGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc        <  1:5434375/93‑1 (MQ=255)
                                                    taataCGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc        >  1:760676/1‑93 (MQ=255)
                                                    taataCGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc        >  1:4492900/1‑93 (MQ=255)
                                                    taataCGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc        >  2:1893035/1‑93 (MQ=255)
                                                      ataCGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgt      <  1:102357/93‑1 (MQ=255)
                                                      ataCGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgt      >  2:895682/1‑93 (MQ=255)
                                                       taCGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgtt     >  1:3195016/1‑93 (MQ=255)
                                                       taCGCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgtt     >  2:5023536/1‑93 (MQ=255)
                                                          gCCT‑TCC‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttgtt  >  2:6011565/1‑93 (MQ=255)
                                                                |                                                                                        
ATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑T‑C‑CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTT  >  NC_000913/2729309‑2729458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑