| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4008398 | 76 (0.320) | 59 (0.250) +AAGA |
22/172 | 19.2 | 44.5% | coding (481/516 nt) | b4555 | hypothetical protein |
| ? | NC_000913 | 4008399 = | 76 (0.310) | coding (482/516 nt) | b4555 | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAGGCCATGCGCTGGAA‑G‑GCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4008309‑4008398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATT > NC_000913/4008399‑4008420 |||| GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGA < 2:722109/93‑1GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGA > 2:2003960/1‑93GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGA > 1:882407/1‑93GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GGTTCAAAAGGGCATGCGCTGGAA‑GCGGTGGCGA > 2:4689360/1‑93 CGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAA < 2:4357872/93‑1 CGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAA < 2:2103880/93‑1 ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGA < 2:5143571/93‑1 ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGA < 2:4328059/93‑1 ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGA < 2:3925526/93‑1 ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGA < 2:219070/93‑1 ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGA > 1:3268770/1‑93 ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGA > 1:4242722/1‑93 ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCACTGGCTGGAAGG‑GGTGGCGAAaa > 1:1410130/1‑91 TCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAA > 1:2474435/1‑93 TCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAAGCCATGCGCTGGAA‑GCGGTGGCGAAGAA > 2:2923090/1‑93 CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGCAGAAA > 2:1483208/1‑93 CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA < 1:3617388/93‑1 CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA < 2:2759649/93‑1 GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGG‑GGTTCAAAAAGCCATGCGCTGGAA‑GCGGTGGCGAAGAAAC > 1:4633490/1‑93 GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAAa > 2:4845784/1‑92 GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAAC > 2:5127328/1‑93 GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAAC > 1:4543322/1‑93 GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GCTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGGAAC > 2:2220119/1‑93 CGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACT < 2:726553/93‑1 CGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGGGGCGAAGAAACT > 1:1947769/1‑93 GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACT‑G < 1:246231/93‑1 GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACT‑G < 1:2168139/93‑1 GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACT‑G < 1:4226647/93‑1 GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACT‑G < 2:5798836/93‑1 GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACT‑G < 1:1410897/93‑1 GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAAGCCATGCGCTGGGA‑GCGGTGGCGAAGAAACcg > 2:5668491/1‑91 TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACT‑GG < 1:1245806/93‑1 TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACT‑GG > 1:5165655/1‑93 TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACT‑GG < 2:432491/93‑1 CAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAATC‑GGTGGCGAAGAAACT‑GGg > 2:2076585/1‑92 AACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGGAGAAACT‑GGgc > 2:2326474/1‑91 AACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACT‑GGgc > 1:2585033/1‑91 AACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACT‑GGgc < 2:2700027/93‑3 AACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGGGGCGAAGAAACT‑GGgc > 1:2028399/1‑91 ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACT‑GGgct > 2:5837243/1‑90 ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACT‑GGgct < 2:6279284/93‑4 ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACT‑GGgct > 1:4390239/1‑90 ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACT‑GGgct > 1:4038194/1‑90 ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GGTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACT‑GGgct > 2:1887147/1‑90 CGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTCC‑AAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACT‑GGgcta > 2:3708020/1‑89 AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAG‑C > 1:2530178/1‑93 AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAG‑C < 1:1564991/93‑1 GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAG‑Cc < 1:4578397/93‑2 GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAG‑Cc > 1:3988027/1‑92 GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAG‑Cc < 2:2280649/93‑2 GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAG‑Cc < 1:6216442/93‑2 GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAG‑Cc < 2:3483949/93‑2 TTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTTA‑AAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAG‑Cct > 2:2625072/1‑91 TTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAG‑Cct > 2:6136331/1‑91 TTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAG‑Cct > 1:1746951/1‑91 TTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAG‑Cct < 2:1089225/93‑3 TTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAG‑Cctg < 2:170247/93‑4 TTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAG‑Cctg > 1:47325/1‑90 TCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAG‑Cctga > 1:2585529/1‑89 TCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAG‑Cctga > 1:3176408/1‑89 TCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAG‑Cctga < 1:5327264/93‑5 TCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAGCCTGAAG > 2:2061816/1‑93 TCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAGCCTGAAG > 1:5212938/1‑93 TCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAGCCTGAAG < 1:4528225/93‑1 CCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATT > 2:4761411/1‑93 CCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATT > 1:4574729/1‑93 |||| GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAGGCCATGCGCTGGAA‑G‑GCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4008309‑4008398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATT > NC_000913/4008399‑4008420 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |