BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,410,192	T→C	intergenic (+18/‑66)	b3262 → / → yhdU	putative methyltransferase/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,410,192	0	T	C	100.0%	876.5 / NA	269	intergenic (+18/‑66)	b3262/yhdU	putative methyltransferase/hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (141/128); total (141/128)

Only 100 of 281 total aligned reads displayed.

AAAAAGAAAGACCGGCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGTTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCAAGTATTGGTGGCTC  >  NC_000913/3410102‑3410281

aaaaaGAAAGACCGGCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGctt                                                                                         <  1:2979267/93‑1 (MQ=255)

aaaaaGAAAGACCGGCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGctt                                                                                         >  1:553937/1‑93 (MQ=255)

 aaaaGAAAGACCGGCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGcttt                                                                                        <  2:6208810/93‑1 (MQ=255)

  aaagaaagACCGGCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTc                                                                                       <  1:5363222/93‑1 (MQ=255)

   aagaaagaCCGGCAACCTGTCAAAACGAAGCCTGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCa                                                                                      <  1:326456/93‑1 (MQ=255)

   aagaaagaCCGGCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCa                                                                                      >  2:1287308/1‑93 (MQ=255)

     gaaagaCCGGCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGa                                                                                    <  2:4290927/93‑1 (MQ=255)

     gaaagaCCGGCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGa                                                                                    <  1:2904264/93‑1 (MQ=255)

       aagaCCGGCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGatt                                                                                  <  1:3671114/93‑1 (MQ=255)

        agaCCGGCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGatta                                                                                 >  2:1181317/1‑93 (MQ=255)

        agaCCGGCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGatta                                                                                 >  1:4460885/1‑93 (MQ=255)

         gaCCGGCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGattat                                                                                >  2:286624/1‑93 (MQ=255)

         gaCCGGCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGattat                                                                                >  1:5958944/1‑93 (MQ=255)

          aCCGGCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGattatt                                                                               <  2:2492787/93‑1 (MQ=255)

           ccGGCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTc                                                                              >  1:2406518/1‑93 (MQ=255)

            cGGCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCa                                                                             >  2:3226552/1‑93 (MQ=255)

             ggCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCAt                                                                            <  1:4194410/93‑1 (MQ=255)

             ggCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCAt                                                                            >  2:3860854/1‑93 (MQ=255)

             ggCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGACGTGTAAGCCTGGCTTTCAGATTATTCAt                                                                            >  1:5850843/1‑93 (MQ=255)

               cAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTTGCTTTCAGATTATTCAttt                                                                          <  2:6083887/93‑1 (MQ=255)

               cAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCAttt                                                                          <  2:2028207/93‑1 (MQ=255)

                aaCCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTc                                                                         <  1:5446345/93‑1 (MQ=255)

                aaCCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTc                                                                         >  2:2439074/1‑93 (MQ=255)

                  ccTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCgt                                                                       <  1:3147674/93‑1 (MQ=255)

                    tGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCgtgt                                                                     >  2:2772607/1‑93 (MQ=255)

                    tGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCgtgt                                                                     >  2:2120639/1‑93 (MQ=255)

                     gTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGta                                                                    <  1:2338536/93‑1 (MQ=255)

                     gTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGta                                                                    <  2:5522277/93‑1 (MQ=255)

                     gTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGta                                                                    <  2:5750853/93‑1 (MQ=255)

                     gTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGta                                                                    <  2:3733309/93‑1 (MQ=255)

                      tCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTTATTTAGTGtaa                                                                   >  2:5484623/1‑92 (MQ=255)

                      tCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGtat                                                                   >  1:6103042/1‑93 (MQ=255)

                      tCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGtat                                                                   >  1:346233/1‑93 (MQ=255)

                         aaaCGAAGCCGGTTAAGCTAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATAtt                                                                <  1:3972340/93‑1 (MQ=255)

                           aCGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTc                                                              >  2:2594037/1‑93 (MQ=255)

                              aaGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTg                                                           >  1:360869/1‑93 (MQ=255)

                               aGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGc                                                          <  2:3292035/93‑1 (MQ=255)

                                gCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGcc                                                         >  1:3707074/1‑93 (MQ=255)

                                  cGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAg                                                       >  2:1814833/1‑93 (MQ=255)

                                  cGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAg                                                       >  2:668690/1‑93 (MQ=255)

                                   ggTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGa                                                      >  2:3621925/1‑93 (MQ=255)

                                   ggTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGa                                                      >  1:5594213/1‑93 (MQ=255)

                                      tAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACtt                                                   <  2:4040523/93‑1 (MQ=255)

                                       aaGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTg                                                  <  2:2661107/93‑1 (MQ=255)

                                       aaGAGAAGTTGCCCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTg                                                  <  2:5362943/93‑1 (MQ=255)

                                        aGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTgg                                                 <  1:4419149/93‑1 (MQ=255)

                                         gCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGt                                                >  2:3379828/1‑93 (MQ=255)

                                         gCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGt                                                <  2:760477/93‑1 (MQ=255)

                                         gCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGt                                                >  1:5076421/1‑93 (MQ=255)

                                           gAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTa                                              >  1:1647625/1‑93 (MQ=255)

                                           gAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTa                                              >  1:2303858/1‑93 (MQ=255)

                                             aGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTaaa                                            <  1:4615973/93‑1 (MQ=255)

                                              gTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAAc                                           <  1:1307607/93‑1 (MQ=255)

                                              gTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAAc                                           <  1:410450/93‑1 (MQ=255)

                                              gTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAAc                                           <  2:1855441/93‑1 (MQ=255)

                                              gTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTATCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAAc                                           >  1:868934/1‑93 (MQ=255)

                                               ttGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACa                                          >  2:2880557/1‑93 (MQ=255)

                                               ttGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACa                                          <  2:5016818/93‑1 (MQ=255)

                                                 gACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATg                                        <  1:1932839/93‑1 (MQ=255)

                                                     ccGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGcaca                                    <  2:467550/93‑1 (MQ=255)

                                                     ccGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGcaca                                    <  2:3239231/93‑1 (MQ=255)

                                                      cGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAg                                   >  1:3836606/1‑93 (MQ=255)

                                                      cGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAg                                   <  1:2727023/93‑1 (MQ=255)

                                                       gATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAgg                                  >  1:5910503/1‑93 (MQ=255)

                                                        aTCTCATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGc                                 <  2:4655673/93‑1 (MQ=255)

                                                         tctcATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCt                                >  1:6264686/1‑93 (MQ=255)

                                                          ctcATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTc                               <  1:1060981/93‑1 (MQ=255)

                                                          ctcATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTc                               <  1:1145419/93‑1 (MQ=255)

                                                           tcATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCa                              <  1:3531175/93‑1 (MQ=255)

                                                           tcATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCa                              >  1:1755577/1‑93 (MQ=255)

                                                            cATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAg                             <  1:2593906/93‑1 (MQ=255)

                                                            cATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAg                             >  2:3170977/1‑93 (MQ=255)

                                                            cATTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAg                             >  1:3912583/1‑93 (MQ=255)

                                                             aTTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAgg                            >  1:2124485/1‑93 (MQ=255)

                                                             aTTACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAgg                            >  1:4352576/1‑93 (MQ=255)

                                                             aTTACAAAGTAAAGGATGTGTAAGCCTGGCTTCCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAgg                            <  2:1432235/93‑1 (MQ=255)

                                                              ttACAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGt                           >  2:5950315/1‑93 (MQ=255)

                                                                aCAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTaa                         >  2:6175447/1‑93 (MQ=255)

                                                                 cAAAGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAAt                        <  1:657474/93‑1 (MQ=255)

                                                                  aaaGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATg                       <  2:4928211/93‑1 (MQ=255)

                                                                    aGTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGAt                     >  2:308798/1‑93 (MQ=255)

                                                                     gTAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGAtt                    <  1:1012247/93‑1 (MQ=255)

                                                                      tAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTc                   >  1:4711258/1‑93 (MQ=255)

                                                                      tAAAGGATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTc                   <  2:1066640/93‑1 (MQ=255)

                                                                          ggATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCaa               <  1:5205619/93‑1 (MQ=255)

                                                                           gATGTGTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCAAg              >  1:3227169/1‑93 (MQ=255)

                                                                             tgtgTAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCAAGTa            >  2:4742963/1‑93 (MQ=255)

                                                                              gtgtAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCAAGTAt           >  2:1603177/1‑93 (MQ=255)

                                                                                gtAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCAAGTATtg         <  1:3830330/93‑1 (MQ=255)

                                                                                gtAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCAAGTATtg         >  2:5044010/1‑93 (MQ=255)

                                                                                gtAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCAAGTATtg         <  1:4548604/93‑1 (MQ=255)

                                                                                 tAAGCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCAAGTATtgg        <  1:5689412/93‑1 (MQ=255)

                                                                                    gCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCAAGTATtggtgg     >  2:2345625/1‑93 (MQ=255)

                                                                                    gCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCAAGTATtggtgg     >  1:1721872/1‑93 (MQ=255)

                                                                                    gCCTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCAAGTATtggtgg     >  2:1791986/1‑93 (MQ=255)

                                                                                     ccTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCAAGTATTGGTGGc    <  1:1784213/93‑1 (MQ=255)

                                                                                      cTGGCTTTCAGATTCTTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCAAGTATTGGTGGCt   >  2:3918405/1‑93 (MQ=255)

                                                                                      cTGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCAAGTATTGGTGGCt   <  2:5282524/93‑1 (MQ=255)

                                                                                       tGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCAAGTATTGGTGGCtc  >  1:2773102/1‑93 (MQ=255)

                                                                                       tGGCTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCAAGTATTGGTGGCtc  >  2:3490524/1‑93 (MQ=255)

AAAAAGAAAGACCGGCAACCTGTCAAAACGAAGCCGGTTAAGCGAAGTTGACCCCGATCTCATTACAAAGTAAAGGATGTGTAAGCCTGGTTTTCAGATTATTCATTTCGTGTATATTTCCTGCCAGACTTGGTTAAACATGCACAGGCTCAGGTAATGATTCGCAAGTATTGGTGGCTC  >  NC_000913/3410102‑3410281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`