BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	409,218	A→G	V9A (GTT→GCT)	yaiD ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	409,218	0	A	G	100.0%	705.5 / NA	216	V9A (GTT→GCT)	yaiD	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (100/116); total (100/116)

Only 100 of 218 total aligned reads displayed.

TCCTGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAACCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCTTGC  >  NC_000913/409128‑409307

tCCTGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGcc                                                                                         >  1:5401885/1‑93 (MQ=255)

 ccTGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCa                                                                                        >  2:630525/1‑93 (MQ=255)

 ccTGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCa                                                                                        >  1:2574504/1‑93 (MQ=255)

   tGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCAtt                                                                                      >  1:484593/1‑93 (MQ=255)

   tGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCAtt                                                                                      >  1:4217153/1‑93 (MQ=255)

   tGGCTGCCGCATGGGGTAAATGCCATCGAGGCCAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCAtt                                                                                      >  2:3446128/1‑93 (MQ=255)

     gCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTaa                                                                                    <  2:2807268/93‑1 (MQ=255)

     gCTGCCGCATGGGGTAAATGCCATAGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTaa                                                                                    <  2:3979789/93‑1 (MQ=255)

      cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTaaa                                                                                   >  1:5266824/1‑93 (MQ=255)

       tGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAAt                                                                                  <  2:3545748/93‑1 (MQ=255)

       tGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAAt                                                                                  >  1:1919008/1‑93 (MQ=255)

            cATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTg                                                                             >  2:2030439/1‑93 (MQ=255)

             aTGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGa                                                                            <  1:4458099/93‑1 (MQ=255)

                gggTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAAcc                                                                         >  2:4730362/1‑93 (MQ=255)

                  gTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACcac                                                                       <  1:5481782/93‑1 (MQ=255)

                  gTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACcac                                                                       <  1:1011455/93‑1 (MQ=255)

                   tAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACcaca                                                                      <  1:5090718/93‑1 (MQ=255)

                   tAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACcaca                                                                      >  2:526068/1‑93 (MQ=255)

                   tAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACcaca                                                                      >  2:666010/1‑93 (MQ=255)

                     aaTGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGc                                                                    <  2:2291927/93‑1 (MQ=255)

                     aaTGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGc                                                                    >  1:3093679/1‑93 (MQ=255)

                     aaTGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGc                                                                    >  1:4891935/1‑93 (MQ=255)

                      aagCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCa                                                                   >  2:5008391/3‑93 (MQ=255)

                      aTGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCa                                                                   >  2:1544192/1‑93 (MQ=255)

                      aTGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCa                                                                   <  1:118191/93‑1 (MQ=255)

                       tGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCAt                                                                  >  1:5601100/1‑93 (MQ=255)

                       tGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCAt                                                                  >  2:4974918/1‑93 (MQ=255)

                        gCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATg                                                                 <  1:427198/93‑1 (MQ=255)

                         ccATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGa                                                                <  1:2946982/93‑1 (MQ=255)

                         ccATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGa                                                                <  2:5598695/93‑1 (MQ=255)

                          cATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGAt                                                               >  2:3530594/1‑93 (MQ=255)

                          cATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGAt                                                               >  2:847528/1‑93 (MQ=255)

                           aTCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATa                                                              >  2:1137288/1‑93 (MQ=255)

                           aTCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATa                                                              >  2:2839363/1‑93 (MQ=255)

                           aTCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATa                                                              <  2:5407517/93‑1 (MQ=255)

                           aTCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATa                                                              <  1:1986212/93‑1 (MQ=255)

                              gAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAAtt                                                           >  1:4016962/1‑93 (MQ=255)

                              gAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAAtt                                                           <  2:5988382/93‑1 (MQ=255)

                              gAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAAtt                                                           <  2:3211928/93‑1 (MQ=255)

                                ggCTATCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTc                                                         <  1:2819497/93‑1 (MQ=255)

                                ggCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTc                                                         >  2:4856432/1‑93 (MQ=255)

                                 gCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTcc                                                        <  2:3805588/93‑1 (MQ=255)

                                  cTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCa                                                       <  2:1056879/93‑1 (MQ=255)

                                    aGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATATCTACg                                                     >  1:2726407/1‑93 (MQ=255)

                                     gCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACgg                                                    <  2:5811819/93‑1 (MQ=255)

                                     gCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACgg                                                    >  1:3468990/1‑93 (MQ=255)

                                        gTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCt                                                 <  2:1715409/93‑1 (MQ=255)

                                        gTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCt                                                 <  2:4051504/93‑1 (MQ=255)

                                        gTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCt                                                 <  2:5335289/93‑1 (MQ=255)

                                         tttttCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCtt                                                <  1:5852995/93‑1 (MQ=255)

                                         tttttCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCtt                                                >  1:3516244/1‑93 (MQ=255)

                                           tttCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGt                                              <  2:3907771/93‑1 (MQ=255)

                                            ttCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTc                                             <  2:3035589/93‑1 (MQ=255)

                                            ttCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTc                                             <  1:6273732/93‑1 (MQ=255)

                                             tCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCg                                            >  2:3583706/1‑93 (MQ=255)

                                              ccATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACCGCATGATAATTTCCACGGCCTTGTCGt                                           >  2:4600641/1‑93 (MQ=255)

                                              ccATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGt                                           <  2:570348/93‑1 (MQ=255)

                                               cATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGtt                                          >  1:4590220/1‑93 (MQ=255)

                                               cATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGtt                                          >  2:3418241/1‑93 (MQ=255)

                                               cATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGtt                                          >  2:2443669/1‑93 (MQ=255)

                                               cATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGtt                                          >  1:2457994/1‑93 (MQ=255)

                                                aTCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTa                                         >  1:650399/1‑93 (MQ=255)

                                                 tctcTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTaa                                        >  2:4841187/1‑93 (MQ=255)

                                                   tcttctGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAAt                                      >  1:5654659/1‑93 (MQ=255)

                                                    cttctGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAAtt                                     <  2:447122/93‑1 (MQ=255)

                                                     ttctGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAAttt                                    >  1:1207252/1‑93 (MQ=255)

                                                        tGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGc                                 <  1:778771/93‑1 (MQ=255)

                                                        tGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGc                                 <  1:5185310/93‑1 (MQ=255)

                                                        tGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTACCACGGCCTTGTCGTTAAATTTAGc                                 >  2:2352700/1‑93 (MQ=255)

                                                          cACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCgg                               >  1:1684637/1‑93 (MQ=255)

                                                          cACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCgg                               >  1:3286786/1‑93 (MQ=255)

                                                          cACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCgg                               <  1:4193473/93‑1 (MQ=255)

                                                          cACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCgg                               <  2:4571872/93‑1 (MQ=255)

                                                           aCGCAGCGCAATCTCGCGGCGAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCggg                              >  2:6163903/1‑93 (MQ=255)

                                                            cGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGc                             <  1:2237808/93‑1 (MQ=255)

                                                             gCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCa                            <  2:2944343/93‑1 (MQ=255)

                                                              cAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCAt                           >  1:5785239/1‑93 (MQ=255)

                                                              cAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCAt                           >  2:193428/1‑93 (MQ=255)

                                                                gCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGa                         <  1:6024595/93‑1 (MQ=255)

                                                                gCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGa                         <  2:5780522/93‑1 (MQ=255)

                                                                 cGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGAt                        <  1:6080599/93‑1 (MQ=255)

                                                                 cGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGAt                        <  1:5985507/93‑1 (MQ=255)

                                                                  gAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATa                       >  2:1364498/1‑93 (MQ=255)

                                                                   aaaTCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATaa                      >  2:2533447/1‑93 (MQ=255)

                                                                    aaTCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAAc                     <  2:4288190/93‑1 (MQ=255)

                                                                    aaTCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAAc                     <  1:1890417/93‑1 (MQ=255)

                                                                     aTCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACg                    >  1:1414705/1‑93 (MQ=255)

                                                                     aTCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACg                    <  1:3852646/93‑1 (MQ=255)

                                                                      tctcGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGa                   >  1:4159881/1‑93 (MQ=255)

                                                                         cgcgGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAAtt                <  1:337228/93‑1 (MQ=255)

                                                                         cgcgGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAAtt                <  1:3692478/93‑1 (MQ=255)

                                                                           cgGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGt              <  1:398018/93‑1 (MQ=255)

                                                                           cgGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGt              <  1:1159532/93‑1 (MQ=255)

                                                                            ggCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTc             >  2:2325144/1‑93 (MQ=255)

                                                                            ggCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTc             <  1:1210977/93‑1 (MQ=255)

                                                                             gCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTcg            <  1:3240346/93‑1 (MQ=255)

                                                                              cTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTcgg           <  2:4142914/93‑1 (MQ=255)

                                                                                  gACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCggcggc       >  2:1291197/1‑93 (MQ=255)

                                                                                    cGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCt     <  1:1799445/93‑1 (MQ=255)

                                                                                      gTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCTTg   >  1:306992/1‑93 (MQ=255)

TCCTGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAACCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCTTGC  >  NC_000913/409128‑409307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`