BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,795,233	T→C	L220P (CTG→CCG)	rfaL →	O‑antigen ligase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,795,233	0	T	C	100.0%	408.0 / NA	127	L220P (CTG→CCG)	rfaL	O‑antigen ligase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (82/45); total (82/45)

Only 100 of 127 total aligned reads displayed.

CTAAGAAAAATCATCCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCTGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTCTACTAATTGC  >  NC_000913/3795143‑3795320

cTAAGAAAAATCATCCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGt                                                                                       <  2:2578760/93‑1 (MQ=255)

     aaaaaTCATCCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCt                                                                                  <  2:4000400/93‑1 (MQ=255)

      aaaaTCATCCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCta                                                                                 >  2:5747618/1‑93 (MQ=255)

       aaaTCATCCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCtat                                                                                <  1:2939516/93‑1 (MQ=255)

       aaaTCATCCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCtat                                                                                >  2:4744684/1‑93 (MQ=255)

       aaaTCATCCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCtat                                                                                >  2:208924/1‑93 (MQ=255)

         atcatcCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATaa                                                                              >  1:2217060/1‑93 (MQ=255)

          tcatcCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAAt                                                                             >  1:61259/1‑93 (MQ=255)

          tcatcCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAAt                                                                             >  2:6242411/1‑93 (MQ=255)

          tcatcCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAAt                                                                             <  2:1511166/93‑1 (MQ=255)

             tcCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTtg                                                                          >  2:1289269/1‑93 (MQ=255)

               cTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTtgtg                                                                        >  1:5027523/1‑93 (MQ=255)

                 tttttatttttaTTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGtt                                                                      >  1:2763275/1‑93 (MQ=255)

                   tttatttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTtgc                                                                    <  1:3588007/93‑1 (MQ=255)

                     tatttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTtgctg                                                                  <  1:2915590/93‑1 (MQ=255)

                      atttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTtgctgc                                                                 >  2:5191214/1‑93 (MQ=255)

                      atttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTtgctgc                                                                 <  2:704324/93‑1 (MQ=255)

                      atttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTtgctgc                                                                 >  1:3274155/1‑93 (MQ=255)

                       tttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCa                                                                >  2:2921330/1‑93 (MQ=255)

                       tttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCa                                                                >  2:462080/1‑93 (MQ=255)

                       tttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCa                                                                <  1:5964933/93‑1 (MQ=255)

                       tttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTCCCCTATAATTTGTGTtgctgct                                                                >  2:3693522/1‑92 (MQ=255)

                         tttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCAtt                                                              >  2:5820626/1‑93 (MQ=255)

                         tttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCAtt                                                              <  1:5970497/93‑1 (MQ=255)

                         tttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCAtt                                                              >  1:3551586/1‑93 (MQ=255)

                         tttattAAATAGTCGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCAtt                                                              <  1:3600163/93‑1 (MQ=255)

                          ttattaAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTa                                                             >  2:2988584/1‑93 (MQ=255)

                          ttattaAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTa                                                             >  1:3483145/1‑93 (MQ=255)

                          ttattaAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTa                                                             >  2:5471156/1‑93 (MQ=255)

                          ttattaAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTa                                                             <  1:696385/93‑1 (MQ=255)

                           tattaAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTaa                                                            >  1:1056940/1‑93 (MQ=255)

                            attaAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAAt                                                           >  2:2281072/1‑93 (MQ=255)

                             ttaAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATa                                                          >  1:1898580/1‑93 (MQ=255)

                              taAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAg                                                         >  1:3447805/1‑93 (MQ=255)

                              taAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAg                                                         >  2:1603644/1‑93 (MQ=255)

                              taAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAg                                                         <  1:5928911/93‑1 (MQ=255)

                               aaaTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGc                                                        >  1:2403173/1‑93 (MQ=255)

                               aaaTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGc                                                        <  2:5011989/93‑1 (MQ=255)

                               aaaTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGc                                                        >  2:4531828/1‑93 (MQ=255)

                               aaaTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGc                                                        <  2:1183423/93‑1 (MQ=255)

                               aaaTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGc                                                        >  1:6029546/1‑93 (MQ=255)

                                aaTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCt                                                       >  2:2205854/1‑93 (MQ=255)

                                aaTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCt                                                       <  1:1349415/93‑1 (MQ=255)

                                aaTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCt                                                       >  1:4613127/1‑93 (MQ=255)

                                aaTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCt                                                       >  2:5781387/1‑93 (MQ=255)

                                 aTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCtt                                                      <  1:2903129/93‑1 (MQ=255)

                                 aTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCtt                                                      >  2:5169826/1‑93 (MQ=255)

                                 aTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCtt                                                      >  2:1273309/1‑93 (MQ=255)

                                 aTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCtt                                                      <  2:4180640/93‑1 (MQ=255)

                                   aGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCttat                                                    <  1:3592887/93‑1 (MQ=255)

                                   aGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCttat                                                    <  1:5256330/93‑1 (MQ=255)

                                    gTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCttatt                                                   >  2:3662849/1‑93 (MQ=255)

                                    gTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCttatt                                                   >  1:2754179/1‑93 (MQ=255)

                                    gTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCttatt                                                   <  1:2075313/93‑1 (MQ=255)

                                     ttGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCttatta                                                  >  1:4498731/1‑93 (MQ=255)

                                      tGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTtattat                                                 <  2:728770/93‑1 (MQ=255)

                                      tGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTtattat                                                 <  1:2118021/93‑1 (MQ=255)

                                      tGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTtattat                                                 >  2:4864971/1‑93 (MQ=255)

                                         gcgGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTataat                                              >  2:2724578/1‑93 (MQ=255)

                                         gcgGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTataat                                              >  1:157337/1‑93 (MQ=255)

                                          cgGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTataata                                             <  2:5160966/93‑1 (MQ=255)

                                           ggTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTTCTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTAtaataa                                            >  1:1782222/1‑93 (MQ=255)

                                           ggTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTAtaataa                                            >  1:1072739/1‑93 (MQ=255)

                                             tACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAAt                                          >  1:5263413/1‑93 (MQ=255)

                                              aCTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATc                                         >  2:2552992/1‑93 (MQ=255)

                                              aCTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATc                                         <  1:5871093/93‑1 (MQ=255)

                                               cTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCa                                        >  1:2595140/1‑93 (MQ=255)

                                               cTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCa                                        >  1:467504/1‑93 (MQ=255)

                                                  tATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCAccc                                     <  2:2053742/93‑1 (MQ=255)

                                                  tATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCAccc                                     <  1:4495773/93‑1 (MQ=255)

                                                   aTGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCa                                    >  2:3551139/1‑93 (MQ=255)

                                                    tGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCaa                                   <  1:2956688/93‑1 (MQ=255)

                                                      ttCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGa                                 >  1:4056500/1‑93 (MQ=255)

                                                         tGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAAt                              >  2:4497667/1‑93 (MQ=255)

                                                          ggCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAAtt                             >  2:5421929/1‑93 (MQ=255)

                                                          ggCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAAtt                             >  1:5525953/1‑93 (MQ=255)

                                                              cTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACt                         >  2:2857942/1‑93 (MQ=255)

                                                              cTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACt                         >  1:6162308/1‑93 (MQ=255)

                                                                aaCACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTc                       >  2:2500766/1‑93 (MQ=255)

                                                                aaCACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTc                       >  2:4224300/1‑93 (MQ=255)

                                                                aaCACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTc                       >  1:432260/1‑93 (MQ=255)

                                                                  cacaAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCct                     >  1:2040723/1‑93 (MQ=255)

                                                                  cacaAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCct                     >  2:195244/1‑93 (MQ=255)

                                                                   acaAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCctc                    >  2:2587366/1‑93 (MQ=255)

                                                                    caAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCctct                   <  1:1984946/93‑1 (MQ=255)

                                                                    caAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCctct                   >  1:5657227/1‑93 (MQ=255)

                                                                     aaaCCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTa                  >  2:5365290/1‑93 (MQ=255)

                                                                     aaaCCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTa                  <  1:1201553/93‑1 (MQ=255)

                                                                       aCCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTAtt                <  1:2004114/93‑1 (MQ=255)

                                                                          agagCAGCCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGtt             <  1:2586518/93‑1 (MQ=255)

                                                                           gagCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTc            <  2:4878333/93‑1 (MQ=255)

                                                                              cAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTctac         <  2:4364249/93‑1 (MQ=255)

                                                                               aaCCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTctact        >  2:4984798/1‑93 (MQ=255)

                                                                               aaCCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTctact        >  2:5283416/1‑93 (MQ=255)

                                                                               aaCCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTctact        >  2:5841904/1‑93 (MQ=255)

                                                                                 cccTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTCTACTaa      >  1:1057153/1‑93 (MQ=255)

                                                                                  ccTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTCTACTAAt     <  1:912924/93‑1 (MQ=255)

                                                                                   cTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTCTACTAAtt    >  2:1154289/1‑93 (MQ=255)

                                                                                   cTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTCTACTAAtt    <  1:4668886/93‑1 (MQ=255)

                                                                                     aCTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTCTACTAATTGc  <  1:811207/93‑1 (MQ=255)

CTAAGAAAAATCATCCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCTGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTCTACTAATTGC  >  NC_000913/3795143‑3795320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`