BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,802,880	A→G	M233T (ATG→ACG)	rfaP ←	RfaP

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,802,880	0	A	G	100.0%	489.0 / NA	152	M233T (ATG→ACG)	rfaP	RfaP
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (127/25); total (127/25)

Only 100 of 156 total aligned reads displayed.

TTGCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCATCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCTTTA  >  NC_000913/3802790‑3802969

ttGCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTc                                                                                         >  1:1702244/1‑93 (MQ=255)

    gTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAATGCGTCCCaa                                                                                     >  1:4188771/1‑93 (MQ=255)

    gTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaa                                                                                     >  2:4057395/1‑93 (MQ=255)

     ttGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaa                                                                                    >  2:5630736/1‑93 (MQ=255)

     ttGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaa                                                                                    >  2:5196129/1‑93 (MQ=255)

     ttGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaa                                                                                    >  2:1375766/1‑93 (MQ=255)

     ttGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCaaa                                                                                    >  1:4216443/1‑93 (MQ=255)

       gtgtTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAAt                                                                                  >  1:4305476/1‑93 (MQ=255)

        tgtTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATa                                                                                 >  1:6177158/1‑93 (MQ=255)

          ttCGCTCTTTAATACGCTCCGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCTCAATATaaa                                                                               >  2:2145970/1‑93 (MQ=255)

           tCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAAc                                                                              >  1:4655567/1‑93 (MQ=255)

             gCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCt                                                                            >  1:5379191/1‑93 (MQ=255)

             gCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCt                                                                            >  1:5767645/1‑93 (MQ=255)

              ctctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCtt                                                                           >  2:4464766/1‑93 (MQ=255)

              ctctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCtt                                                                           >  2:3708976/1‑93 (MQ=255)

              ctctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCtt                                                                           >  1:323285/1‑93 (MQ=255)

              ctctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCtt                                                                           >  2:5036320/1‑93 (MQ=255)

              ctctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCtt                                                                           >  1:6202988/1‑93 (MQ=255)

               tctTTAATATGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTc                                                                          >  1:3628452/1‑93 (MQ=255)

               tctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTc                                                                          >  2:1457531/1‑93 (MQ=255)

               tctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTc                                                                          >  1:3632850/1‑93 (MQ=255)

               tctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAAACTTc                                                                          >  1:1535480/1‑93 (MQ=255)

                ctTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCa                                                                         >  1:4127407/1‑93 (MQ=255)

                 tttAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCAt                                                                        >  1:3919000/1‑93 (MQ=255)

                  ttAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATa                                                                       >  2:3119341/1‑93 (MQ=255)

                  ttAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATa                                                                       >  2:3354267/1‑93 (MQ=255)

                    aaTACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATaaa                                                                     >  1:4987149/1‑93 (MQ=255)

                     aTACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAAt                                                                    >  1:3145790/1‑93 (MQ=255)

                      tACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATc                                                                   >  2:6118364/1‑93 (MQ=255)

                         gCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGcc                                                                >  2:2390639/1‑93 (MQ=255)

                           tCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAg                                                              >  1:1084278/1‑93 (MQ=255)

                              gCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAACGGCGTCCCAAAATAAACCTTCATAAATCGCCAGata                                                           >  2:1108513/1‑93 (MQ=255)

                              gCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGata                                                           >  1:2451513/1‑93 (MQ=255)

                              gCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGata                                                           >  2:3023630/1‑93 (MQ=255)

                               ccTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGatat                                                          >  1:3211589/1‑93 (MQ=255)

                               ccTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGatat                                                          >  1:4594994/1‑93 (MQ=255)

                                 ttAACGCTTGCCATGTTCAATACATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtct                                                        <  1:5079440/93‑1 (MQ=255)

                                 ttAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtct                                                        >  1:4167197/1‑93 (MQ=255)

                                 ttAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtct                                                        >  2:5548710/1‑93 (MQ=255)

                                 ttAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtct                                                        >  2:3982785/1‑93 (MQ=255)

                                  tAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtctc                                                       >  2:456831/1‑93 (MQ=255)

                                  tAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATAATTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATAtctt                                                       >  1:4431962/1‑92 (MQ=255)

                                   aaCGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATctct                                                      >  2:2410752/1‑93 (MQ=255)

                                   aaCGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATctct                                                      >  2:3911074/1‑93 (MQ=255)

                                     cGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCttt                                                    <  2:3315414/93‑1 (MQ=255)

                                       cTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGc                                                  >  1:3550224/1‑93 (MQ=255)

                                        ttGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCg                                                 >  1:3173761/1‑93 (MQ=255)

                                        ttGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCg                                                 >  2:2399053/1‑93 (MQ=255)

                                           ccATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCa                                              >  2:3531548/1‑93 (MQ=255)

                                           ccATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCa                                              >  2:4055505/1‑93 (MQ=255)

                                           ccATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCa                                              <  2:2559198/93‑1 (MQ=255)

                                            cATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAg                                             >  2:3191863/1‑93 (MQ=255)

                                            cATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAg                                             >  2:300491/1‑93 (MQ=255)

                                            cATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAg                                             >  2:4510865/1‑93 (MQ=255)

                                            cATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAg                                             >  2:4852100/1‑93 (MQ=255)

                                              tGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGc                                           >  1:226986/1‑93 (MQ=255)

                                              tGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGc                                           >  1:1488268/1‑93 (MQ=255)

                                               gTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGcc                                          <  1:2071280/93‑1 (MQ=255)

                                               gTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGcc                                          >  2:922175/1‑93 (MQ=255)

                                                ttCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCa                                         >  2:141989/1‑93 (MQ=255)

                                                 tCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCaa                                        >  1:5279325/1‑93 (MQ=255)

                                                  cAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAat                                       >  1:3866869/1‑93 (MQ=255)

                                                   aaTAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAata                                      >  2:4357976/1‑93 (MQ=255)

                                                    aTAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAatat                                     >  2:5901784/1‑93 (MQ=255)

                                                    aTAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAatat                                     >  1:1049861/1‑93 (MQ=255)

                                                     tAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATAtt                                    <  2:1357032/93‑1 (MQ=255)

                                                         ttCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCAtt                                >  2:771944/1‑93 (MQ=255)

                                                         ttCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCAtt                                >  2:5193537/1‑93 (MQ=255)

                                                         ttCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCAtt                                >  1:3851607/1‑93 (MQ=255)

                                                          tCTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATtg                               >  1:5041271/1‑93 (MQ=255)

                                                           cTGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATtga                              <  1:1685253/93‑1 (MQ=255)

                                                            tGTTCAAGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATtgat                             >  1:4952523/1‑93 (MQ=255)

                                                                 aaGAGACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTGATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGaa                        >  1:3377343/1‑93 (MQ=255)

                                                                  agagACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATgagaca                       <  2:6208058/93‑3 (MQ=255)

                                                                  agagACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGaaa                       <  1:1371220/93‑1 (MQ=255)

                                                                  agagACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGaaa                       >  2:567800/1‑93 (MQ=255)

                                                                  agagACAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGaaa                       <  2:3842611/93‑1 (MQ=255)

                                                                   gagaCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAat                      >  1:4222458/1‑93 (MQ=255)

                                                                   gagaCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAat                      <  1:5911406/93‑1 (MQ=255)

                                                                     gaCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAatat                    >  1:4354464/1‑93 (MQ=255)

                                                                      aCAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAAtata                   >  1:5329959/1‑93 (MQ=255)

                                                                       cAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATaa                  >  1:5503980/1‑93 (MQ=255)

                                                                       cAATATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATaa                  >  1:4082245/1‑93 (MQ=255)

                                                                        aaTATTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATaaa                 <  1:3489575/93‑1 (MQ=255)

                                                                         atatTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAAGCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAAc                <  2:5360893/93‑1 (MQ=255)

                                                                          tatTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAAcc               >  2:2428005/1‑93 (MQ=255)

                                                                          tatTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAAcc               >  2:6256396/1‑93 (MQ=255)

                                                                          tatTTTGCGTAAAGGCGTCCCAAAATAAAACTTCATACATCGCCAGATATATCTTTGCGTCAGGGCAATATTCATTGATGAGAAATATAAAcc               >  2:3107383/1‑93 (MQ=255)

                                                                           atTTTGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCa              >  1:4029889/1‑93 (MQ=255)

                                                                            ttttGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCaa             >  1:2851189/1‑93 (MQ=255)

                                                                            ttttGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCaa             >  2:703332/1‑93 (MQ=255)

                                                                            ttttGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATANTCATTGATGAGAAATATAAACCaa             >  2:2698289/1‑93 (MQ=255)

                                                                              ttGCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATc           <  1:4064508/93‑1 (MQ=255)

                                                                                gCGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAg         <  1:1293399/93‑1 (MQ=255)

                                                                                 cGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAgg        <  2:5068476/93‑1 (MQ=255)

                                                                                 cGTAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAgg        <  1:228082/93‑1 (MQ=255)

                                                                                   tAAAGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTc      >  1:587208/1‑93 (MQ=255)

                                                                                     aaGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCtt    >  1:5044236/1‑93 (MQ=255)

                                                                                     aaGGCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCtt    >  2:1106139/1‑93 (MQ=255)

                                                                                       ggCGTCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCTTTa  >  2:6003969/1‑93 (MQ=255)

TTGCGTTGTGTTCGCTCTTTAATACGCTCGGCCTTAACGCTTGCCATGTTCAATAAATTCTGTTCAAGAGACAATATTTTGCGTAAAGGCATCCCAAAATAAACCTTCATAAATCGCCAGATATCTCTTTGCGTCAGGCCAATATTCATTGATGAGAAATATAAACCAATCAGGTCTTTA  >  NC_000913/3802790‑3802969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`