BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,804,884	T→C	H281R (CAC→CGC)	rfaQ ←	RfaQ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,804,884	0	T	C	100.0%	771.4 / NA	242	H281R (CAC→CGC)	rfaQ	RfaQ
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (143/99); total (143/99)

Only 100 of 245 total aligned reads displayed.

TTGCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAGCACT  >  NC_000913/3804794‑3804973

ttgCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGa                                                                                         <  1:4426538/93‑1 (MQ=255)

  gCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATc                                                                                       >  1:4595922/1‑93 (MQ=255)

  gCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATc                                                                                       >  1:181489/1‑93 (MQ=255)

    ggTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCg                                                                                     >  2:5362737/1‑93 (MQ=255)

     gTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGt                                                                                    >  1:793239/1‑93 (MQ=255)

       cAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTg                                                                                  >  1:4525565/1‑93 (MQ=255)

       cAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTg                                                                                  >  1:3806271/1‑93 (MQ=255)

        aaGTTCATTCCGGGTCGGCCTTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGc                                                                                 >  2:6162767/1‑93 (MQ=255)

        aaGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGc                                                                                 >  2:3731820/1‑93 (MQ=255)

         aGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCa                                                                                >  1:1099686/1‑93 (MQ=255)

         aGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCa                                                                                >  1:5836539/1‑93 (MQ=255)

          gTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCAc                                                                               >  2:5298976/1‑93 (MQ=255)

           ttCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCAcc                                                                              >  1:418979/1‑93 (MQ=255)

           ttCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCAcc                                                                              >  2:5435691/1‑93 (MQ=255)

            tCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCa                                                                             >  1:5232982/1‑93 (MQ=255)

             cATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCaa                                                                            >  1:4972469/1‑93 (MQ=255)

              aTGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCaaa                                                                           <  2:6007758/93‑1 (MQ=255)

              aTGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCaaa                                                                           >  2:4436075/1‑93 (MQ=255)

               tGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAAt                                                                          >  1:5417582/1‑93 (MQ=255)

               tGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGGCCAGGGACGTCAGAATACGCGATCCGTTGCACCaaaa                                                                          >  1:1124193/1‑92 (MQ=255)

                gCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATa                                                                         <  1:6159493/93‑1 (MQ=255)

                gCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATa                                                                         <  2:1113104/93‑1 (MQ=255)

                 ccGGGTCGGCATTTTCTGATAATCCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAg                                                                        <  2:4952956/93‑1 (MQ=255)

                     gTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTa                                                                    >  1:5033489/1‑93 (MQ=255)

                     gTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTa                                                                    >  1:3967495/1‑93 (MQ=255)

                      tCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTaa                                                                   >  1:2032861/1‑93 (MQ=255)

                       cGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAAt                                                                  <  1:6026794/93‑1 (MQ=255)

                        ggCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATg                                                                 <  2:5932430/93‑1 (MQ=255)

                        ggCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATg                                                                 <  1:1535875/93‑1 (MQ=255)

                          cATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGAc                                                               >  1:2825738/1‑93 (MQ=255)

                          cATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGAc                                                               <  2:419487/93‑1 (MQ=255)

                             tttCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTgg                                                            <  2:5234410/93‑1 (MQ=255)

                              ttCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGc                                                           >  2:2124804/1‑93 (MQ=255)

                               tCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCg                                                          >  2:2792068/1‑93 (MQ=255)

                               tCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCg                                                          <  1:2547389/93‑1 (MQ=255)

                               tCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCg                                                          >  2:5137021/1‑93 (MQ=255)

                                cTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGt                                                         >  2:3353134/1‑93 (MQ=255)

                                cTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGt                                                         >  1:1852228/1‑93 (MQ=255)

                                  gATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGttt                                                       <  1:1687030/93‑1 (MQ=255)

                                    tAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTc                                                     >  2:5674348/1‑93 (MQ=255)

                                     aaTTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCa                                                    >  1:13647/1‑93 (MQ=255)

                                      aTTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACTCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCAc                                                   <  1:1946054/93‑1 (MQ=255)

                                      aTTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCAc                                                   <  2:1934093/93‑1 (MQ=255)

                                      aTTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCAc                                                   <  1:4538305/93‑1 (MQ=255)

                                         ccccGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGc                                                <  1:2984994/93‑1 (MQ=255)

                                         ccccGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGc                                                >  2:1359161/1‑93 (MQ=255)

                                         ccccGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGc                                                <  1:4883603/93‑1 (MQ=255)

                                          cccGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGcc                                               >  1:4718680/1‑93 (MQ=255)

                                          cccGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGcc                                               <  2:2339337/93‑1 (MQ=255)

                                           ccGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCg                                              >  1:5448792/1‑93 (MQ=255)

                                             gCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCt                                            <  1:3734668/93‑1 (MQ=255)

                                             gCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCt                                            <  1:5241790/93‑1 (MQ=255)

                                               ccAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGc                                          >  2:3943927/1‑93 (MQ=255)

                                                cAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCa                                         >  1:2388595/1‑93 (MQ=255)

                                                   aaTTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAata                                      <  2:4247148/93‑1 (MQ=255)

                                                   aaTTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAata                                      <  1:3167489/93‑1 (MQ=255)

                                                   aaTTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAata                                      >  2:30799/1‑93 (MQ=255)

                                                     ttGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATg                                    <  1:5115942/93‑1 (MQ=255)

                                                      tGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGt                                   <  2:3880825/93‑1 (MQ=255)

                                                      tGAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGt                                   >  2:5805164/1‑93 (MQ=255)

                                                       gAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTc                                  >  2:2811673/1‑93 (MQ=255)

                                                       gAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTc                                  >  2:1239573/1‑93 (MQ=255)

                                                       gAATAATATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTc                                  >  2:1458911/1‑93 (MQ=255)

                                                        aataatATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTcc                                 <  1:2135417/93‑1 (MQ=255)

                                                        aataatATTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTcc                                 <  1:4937961/93‑1 (MQ=255)

                                                         ataataTTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTccc                                <  2:4620842/93‑1 (MQ=255)

                                                         ataataTTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTccc                                >  1:3290764/1‑93 (MQ=255)

                                                          taataTTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCg                               >  2:5529948/1‑93 (MQ=255)

                                                           aataTTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCgg                              >  1:2348616/1‑93 (MQ=255)

                                                            atatTCTCGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGgc                             <  2:4420390/93‑1 (MQ=255)

                                                                tctcGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAg                         <  2:1667993/93‑1 (MQ=255)

                                                                 ctcGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGa                        >  2:35212/1‑93 (MQ=255)

                                                                 ctcGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGa                        >  1:6205110/1‑93 (MQ=255)

                                                                 ctcGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGa                        >  2:3210763/1‑93 (MQ=255)

                                                                  tcGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGaa                       <  2:2717336/93‑1 (MQ=255)

                                                                  tcGGTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGaa                       >  2:1050040/1‑93 (MQ=255)

                                                                     gTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATcc                    <  2:737432/93‑1 (MQ=255)

                                                                     gTCCAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATcc                    >  1:1017597/1‑93 (MQ=255)

                                                                       ccAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCcac                  >  1:6100836/1‑93 (MQ=255)

                                                                        cAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCcaca                 >  1:2739420/1‑93 (MQ=255)

                                                                        cAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCcaca                 >  1:3414332/1‑93 (MQ=255)

                                                                        cAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCcaca                 <  2:248622/93‑1 (MQ=255)

                                                                        cAGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCcaca                 >  1:380689/1‑93 (MQ=255)

                                                                         aGGGACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCacac                <  2:3487598/93‑1 (MQ=255)

                                                                          gggACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACAcc               >  1:715467/1‑93 (MQ=255)

                                                                          gggACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACAcc               >  1:5729331/1‑93 (MQ=255)

                                                                            gACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCaa             >  2:1995649/1‑93 (MQ=255)

                                                                            gACGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCaa             <  1:1393637/93‑1 (MQ=255)

                                                                             aCGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAAt            <  1:3059849/93‑1 (MQ=255)

                                                                              cGCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATa           <  1:904169/93‑1 (MQ=255)

                                                                               gCCAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATaa          <  1:446436/93‑1 (MQ=255)

                                                                                ccAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATaaa         >  2:47254/1‑93 (MQ=255)

                                                                                 cAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATaaaa        >  1:362606/1‑93 (MQ=255)

                                                                                 cAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATaaaa        >  2:3813558/1‑93 (MQ=255)

                                                                                 cAGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATaaaa        >  2:2943060/1‑93 (MQ=255)

                                                                                  aGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATaaaaa       <  2:435312/93‑1 (MQ=255)

                                                                                  aGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATaaaaa       <  2:2034015/93‑1 (MQ=255)

                                                                                  aGAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATaaaaa       <  2:30274/93‑1 (MQ=255)

                                                                                   gAATACGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAg      >  1:2639410/1‑93 (MQ=255)

                                                                                       aCGCGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAGCACt  <  1:3992164/93‑1 (MQ=255)

TTGCGGTCAAGTTCATGCCGGGTCGGCATTTTCTGATAATTCCCCGCCCAGAATTGAATAATATTCTCGGTCCAGGGACGCCAGAATACGTGATCCGTTGCACCAAATAGACTAATGACTGGCGTTTTCACTGCCGCTGCAATATGTCCCGGCGCAGAATCCACACCAATAAAAAGCACT  >  NC_000913/3804794‑3804973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`