BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,888,869	G→A	A335A (GCG→GCA)	tnaB →	low affinity tryptophan permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,888,869	0	G	A	100.0%	885.5 / NA	240	A335A (GCG→GCA)	tnaB	low affinity tryptophan permease
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (128/112); total (128/112)

Only 100 of 254 total aligned reads displayed.

GTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCGTTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGC  >  NC_000913/3888779‑3888958

gttgttCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCatt                                                                                         <  1:4937197/93‑1 (MQ=255)

 ttgttCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCTGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCattg                                                                                        <  1:1607412/93‑1 (MQ=255)

 ttgttCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCattg                                                                                        <  2:2963639/93‑1 (MQ=255)

  tgttCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCattgt                                                                                       >  1:409805/1‑93 (MQ=255)

  tgttCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCattgt                                                                                       <  1:4775804/93‑1 (MQ=255)

        aTTATCTGGCGTACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATc                                                                                 <  1:245756/93‑1 (MQ=255)

        aTTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATc                                                                                 >  1:4709195/1‑93 (MQ=255)

        aTTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATc                                                                                 >  2:3647484/1‑93 (MQ=255)

         ttATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCt                                                                                >  2:4324572/1‑93 (MQ=255)

           aTCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGa                                                                              <  2:3506509/93‑1 (MQ=255)

           aTCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGa                                                                              <  2:2899561/93‑1 (MQ=255)

           aTCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGa                                                                              <  1:3447215/93‑1 (MQ=255)

           aTCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGAGCTGTTAACCTTCCTGCCACCTGCATTTTTGTATCTGa                                                                              >  2:5038408/1‑93 (MQ=255)

             cTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATc                                                                            <  2:5323317/93‑1 (MQ=255)

              tGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGGGGTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGAtat                                                                           >  1:5210738/1‑91 (MQ=255)

                gCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTc                                                                         <  1:3655113/93‑1 (MQ=255)

                 cGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTcc                                                                        <  2:3295493/93‑1 (MQ=255)

                 cGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTcc                                                                        <  2:5429705/93‑1 (MQ=255)

                  ggACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTccc                                                                       <  2:357233/93‑1 (MQ=255)

                  ggACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTccc                                                                       <  2:3105910/93‑1 (MQ=255)

                  ggACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTccc                                                                       <  1:338030/93‑1 (MQ=255)

                  ggACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGGTGTATCTGATCTTtcc                                                                       >  1:289122/1‑93 (MQ=255)

                   gACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCg                                                                      >  2:4957124/1‑93 (MQ=255)

                      cTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAAc                                                                   <  2:2665328/93‑1 (MQ=255)

                      cTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAAc                                                                   <  2:2445730/93‑1 (MQ=255)

                      cTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAAc                                                                   <  1:3872164/93‑1 (MQ=255)

                       tGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACg                                                                  >  2:2859812/1‑93 (MQ=255)

                       tGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACg                                                                  >  2:4940669/1‑93 (MQ=255)

                         tttAAGATTGATACCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGc                                                                <  2:1447334/93‑1 (MQ=255)

                            aaGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCttt                                                             <  2:4155263/93‑1 (MQ=255)

                             aGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCttta                                                            <  2:180958/93‑1 (MQ=255)

                             aGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCttta                                                            <  2:4800094/93‑1 (MQ=255)

                              gATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCtttat                                                           >  2:5864730/1‑93 (MQ=255)

                              gATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCtttat                                                           >  2:462996/1‑93 (MQ=255)

                               aTTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCtttatt                                                          >  1:305109/1‑93 (MQ=255)

                               aTTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCtttatt                                                          >  2:2784434/1‑93 (MQ=255)

                                ttGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATTTTCCCGAACGGCtttattt                                                         >  2:2992122/1‑93 (MQ=255)

                                ttGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACTGctttcttt                                                         >  2:575573/1‑93 (MQ=255)

                                ttGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCtttattt                                                         >  1:2841446/1‑93 (MQ=255)

                                  gATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTAc                                                       <  2:4709165/93‑1 (MQ=255)

                                    tAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACgg                                                     >  2:4108235/1‑93 (MQ=255)

                                    tAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACgg                                                     <  1:3586734/93‑1 (MQ=255)

                                    tAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACgg                                                     >  1:6026454/1‑93 (MQ=255)

                                    tAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACgg                                                     >  1:435982/1‑93 (MQ=255)

                                     aaCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACggg                                                    <  2:1087644/93‑1 (MQ=255)

                                      aCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGa                                                   <  1:1497566/93‑1 (MQ=255)

                                      aCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGa                                                   <  1:1462676/93‑1 (MQ=255)

                                      aCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGa                                                   >  1:1169067/1‑93 (MQ=255)

                                      aCTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGa                                                   >  1:5553360/1‑93 (MQ=255)

                                       cTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGAt                                                  <  2:1531225/93‑1 (MQ=255)

                                        tCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATc                                                 <  2:1945734/93‑1 (MQ=255)

                                         cccACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATcg                                                >  1:6185094/1‑93 (MQ=255)

                                          ccACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATcgg                                               <  1:5163661/93‑1 (MQ=255)

                                           cACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATcggc                                              <  1:800580/93‑1 (MQ=255)

                                           cACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATcggc                                              >  1:2550171/1‑93 (MQ=255)

                                             cggcggGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATcggcgg                                            <  2:5813018/93‑1 (MQ=255)

                                              ggcgggcgTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGt                                           <  1:1765346/93‑1 (MQ=255)

                                                 ggtcgTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGcc                                        <  2:5159175/90‑1 (MQ=255)

                                                  ggcgTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCg                                       >  2:4448299/1‑93 (MQ=255)

                                                   gcgTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCgg                                      >  1:2742990/1‑93 (MQ=255)

                                                    cgTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCggg                                     <  2:599273/93‑1 (MQ=255)

                                                     gTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTATGGTATCGTCGGTGCCgggt                                    >  2:312596/1‑92 (MQ=255)

                                                     gTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGc                                    >  2:1960905/1‑93 (MQ=255)

                                                      tttCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCt                                   >  1:5939277/1‑93 (MQ=255)

                                                      tttCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCt                                   <  2:3331125/93‑1 (MQ=255)

                                                        tCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCtgg                                 >  1:2366437/1‑92 (MQ=255)

                                                        tCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCtgg                                 >  2:873062/1‑92 (MQ=255)

                                                         cAAAACCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCtgtg                                <  2:2109631/93‑1 (MQ=255)

                                                          aaaaCCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTgc                               >  1:3290053/1‑93 (MQ=255)

                                                           aaaCCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTgcg                              >  2:6243495/1‑93 (MQ=255)

                                                             aCCGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGcc                            >  1:1668414/1‑93 (MQ=255)

                                                              ccGTGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGcca                           <  1:11135/93‑1 (MQ=255)

                                                                 tGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGccacca                        >  2:5568404/1‑93 (MQ=255)

                                                                 tGCTGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGccacca                        >  2:3692271/1‑93 (MQ=255)

                                                                    tGTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGGGAGCCACCATCt                     >  2:2679209/1‑93 (MQ=255)

                                                                     gTTAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTg                    <  1:4755450/93‑1 (MQ=255)

                                                                      ttAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTgg                   >  2:3895049/1‑93 (MQ=255)

                                                                      ttAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTgg                   >  1:1007755/1‑93 (MQ=255)

                                                                      tgaaCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTgg                   >  2:6207000/3‑93 (MQ=255)

                                                                       tAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTggg                  <  1:1022813/93‑1 (MQ=255)

                                                                       tAACCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTggg                  <  2:1296686/93‑1 (MQ=255)

                                                                        aaCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTgggg                 >  2:1555950/1‑92 (MQ=255)

                                                                        aaCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGc                 >  2:2250456/1‑93 (MQ=255)

                                                                        aaCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGc                 <  2:1455141/93‑1 (MQ=255)

                                                                        aaCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGc                 >  1:3838185/1‑93 (MQ=255)

                                                                        aaCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGc                 >  2:5593608/1‑93 (MQ=255)

                                                                         aCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCg                <  1:1821320/93‑1 (MQ=255)

                                                                         aCCTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCg                <  1:2929990/93‑1 (MQ=255)

                                                                           cTTCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGt              >  1:5357722/1‑93 (MQ=255)

                                                                            ttCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTc             >  2:5487016/1‑93 (MQ=255)

                                                                            ttCCTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTc             >  1:1871299/1‑93 (MQ=255)

                                                                              ccTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCat           <  1:655179/93‑1 (MQ=255)

                                                                               cTGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCatt          <  2:1651769/93‑1 (MQ=255)

                                                                                tGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCatta         <  1:5304114/93‑1 (MQ=255)

                                                                                tGCCACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCatta         <  2:2548631/93‑1 (MQ=255)

                                                                                  ccACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCattatt       <  2:1608259/93‑1 (MQ=255)

                                                                                  ccACCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCattatt       >  1:203534/1‑93 (MQ=255)

                                                                                    cccTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTcc     <  2:110939/92‑1 (MQ=255)

                                                                                    aCCTGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTcc     <  1:3686799/93‑1 (MQ=255)

                                                                                       tGCATTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGc  <  2:4393962/93‑1 (MQ=255)

GTTGTTCGATTATCTGGCGGACCTGTTTAAGATTGATAACTCCCACGGCGGGCGTTTCAAAACCGTGCTGTTAACCTTCCTGCCACCTGCGTTGTTGTATCTGATCTTCCCGAACGGCTTTATTTACGGGATCGGCGGTGCCGGGCTGTGCGCCACCATCTGGGCGGTCATTATTCCCGC  >  NC_000913/3888779‑3888958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`