BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,945,896	T→C	V63A (GTA→GCA)	yifE →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,945,896	0	T	C	100.0%	868.1 / NA	268	V63A (GTA→GCA)	yifE	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (148/120); total (148/120)

Only 100 of 280 total aligned reads displayed.

AACTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGTATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCAC  >  NC_000913/3945806‑3945984

aaCTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCAt                                                                                        >  1:133117/1‑93 (MQ=255)

aaCTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCAt                                                                                        <  2:4088736/93‑1 (MQ=255)

 aCTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATg                                                                                       >  1:3763360/1‑93 (MQ=255)

   tGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGcc                                                                                     <  2:3190844/93‑1 (MQ=255)

   tGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGcc                                                                                     <  1:2941674/93‑1 (MQ=255)

   tGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGcc                                                                                     <  1:5642660/93‑1 (MQ=255)

    gCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCg                                                                                    >  1:2831235/1‑93 (MQ=255)

     cTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGt                                                                                   <  2:2303339/93‑1 (MQ=255)

      ttGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTg                                                                                  <  2:4026803/93‑1 (MQ=255)

      ttGAGCGTCATGGTTATGCCTTCAATGAGCTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTg                                                                                  >  2:3805475/1‑93 (MQ=255)

        gAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGc                                                                                >  1:3142457/1‑93 (MQ=255)

            gTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGCAACTCTTAGTAGCAGCATGCCGTGGCGAAc                                                                            >  1:1817508/1‑93 (MQ=255)

             tCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACg                                                                           >  1:1957988/1‑93 (MQ=255)

             tCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACg                                                                           >  1:3854118/1‑93 (MQ=255)

             tCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACg                                                                           <  1:3544176/93‑1 (MQ=255)

              cATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGt                                                                          >  2:1084324/1‑93 (MQ=255)

              cATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGt                                                                          <  2:1936183/93‑1 (MQ=255)

                tGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTgg                                                                        >  1:70690/1‑92 (MQ=255)

                tGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGa                                                                        >  1:572038/1‑93 (MQ=255)

                tGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGa                                                                        >  2:2167374/1‑93 (MQ=255)

                  gTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGc                                                                      <  2:91422/93‑1 (MQ=255)

                   ttATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGcc                                                                     >  1:5933329/1‑93 (MQ=255)

                    tATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCa                                                                    >  2:1676461/1‑93 (MQ=255)

                    tATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCa                                                                    <  1:226293/93‑1 (MQ=255)

                    tATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGAAAGCCGTGGCGAACGTGAGcct                                                                    >  2:5876018/1‑92 (MQ=255)

                      tGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGt                                                                  >  2:17218/1‑93 (MQ=255)

                        ccTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGa                                                                <  2:135983/93‑1 (MQ=255)

                        ccTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGa                                                                >  1:3650287/1‑93 (MQ=255)

                        ccTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGa                                                                <  1:5391737/93‑1 (MQ=255)

                         cTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGAc                                                               >  1:3266849/1‑93 (MQ=255)

                         cTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGAc                                                               >  2:4258748/1‑93 (MQ=255)

                          ttCAATGAGTGGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACa                                                              <  2:2914341/93‑1 (MQ=255)

                           tCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAg                                                             >  2:317608/1‑93 (MQ=255)

                           tCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAg                                                             <  2:2238751/93‑1 (MQ=255)

                            cAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGa                                                            >  1:3403724/1‑93 (MQ=255)

                            cAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGa                                                            >  2:650990/1‑93 (MQ=255)

                             aaTGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGaa                                                           >  2:1252521/1‑93 (MQ=255)

                             aaTGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGaa                                                           >  1:2670659/1‑93 (MQ=255)

                             aaTGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGAGACAGaa                                                           >  2:5440746/1‑93 (MQ=255)

                              aTGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAg                                                          >  1:2373459/1‑93 (MQ=255)

                               tGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAgt                                                         <  2:2751018/93‑2 (MQ=255)

                               tGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGc                                                         >  2:3881633/1‑93 (MQ=255)

                               tGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGc                                                         >  1:2665692/1‑93 (MQ=255)

                                gAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCa                                                        <  1:806763/93‑1 (MQ=255)

                                 aGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAg                                                       <  2:241549/93‑1 (MQ=255)

                                   ttGGATCTTGGCAACCGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGaa                                                     <  2:118314/93‑1 (MQ=255)

                                   ttGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGaa                                                     <  1:431993/93‑1 (MQ=255)

                                     ggATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGTCAGTGACAGAAGCAGAAcg                                                   <  1:1685279/93‑1 (MQ=255)

                                     ggATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAAcg                                                   >  2:450176/1‑93 (MQ=255)

                                     ggATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAAcg                                                   >  2:4394422/1‑93 (MQ=255)

                                     ggATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAAcg                                                   <  1:4008141/93‑1 (MQ=255)

                                      gagcTTGGCAAGCGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAAcgc                                                  <  2:2533250/90‑1 (MQ=255)

                                      gATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAAcgc                                                  >  2:302769/1‑93 (MQ=255)

                                      gATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAAcgc                                                  <  1:5039807/93‑1 (MQ=255)

                                      gATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAAcgc                                                  >  2:4705128/1‑93 (MQ=255)

                                       aTCTGGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAAcgcg                                                 <  1:46025/93‑1 (MQ=255)

                                        tCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCgt                                                >  1:2858872/1‑93 (MQ=255)

                                         cTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCgtg                                               >  1:4710078/1‑93 (MQ=255)

                                          ttGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCgtgt                                              >  1:4849409/1‑93 (MQ=255)

                                          ttGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCgtgt                                              >  1:4409182/1‑93 (MQ=255)

                                                 aCGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCaa                                       <  2:5993484/93‑1 (MQ=255)

                                                  cgcgAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAg                                      <  1:1660866/93‑1 (MQ=255)

                                                    cgAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGta                                    >  1:3075257/1‑93 (MQ=255)

                                                      aGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGtata                                  <  1:6210368/93‑1 (MQ=255)

                                                      aGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGtata                                  <  1:1736036/93‑1 (MQ=255)

                                                       gCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTatat                                 <  2:5850202/93‑1 (MQ=255)

                                                       gCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTatat                                 <  2:2624410/93‑1 (MQ=255)

                                                         cGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGa                               <  2:3235820/93‑1 (MQ=255)

                                                           gTTACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGAcg                             <  2:3361189/93‑1 (MQ=255)

                                                            ttACCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGAcgc                            <  1:4251514/93‑1 (MQ=255)

                                                              aCCGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGt                          <  2:1580892/93‑1 (MQ=255)

                                                               ccGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTa                         <  2:1162270/93‑1 (MQ=255)

                                                               ccGAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTa                         >  1:1005448/1‑93 (MQ=255)

                                                               acGAGGAAGAGAAACTCTTCTGAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTa                         <  2:4132014/92‑1 (MQ=255)

                                                                 gAGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTAtt                       <  2:3534873/93‑1 (MQ=255)

                                                                  aGGAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTa                      <  2:1550277/93‑1 (MQ=255)

                                                                   ggAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTaa                     >  1:2313031/1‑93 (MQ=255)

                                                                    gAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAg                    >  1:2105011/1‑93 (MQ=255)

                                                                    gAAGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAg                    <  1:1504616/93‑1 (MQ=255)

                                                                    gAAGAGAAACTCTTCGTAGCAGCATACCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAg                    <  2:4892617/93‑1 (MQ=255)

                                                                     aaGAGAAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGc                   <  1:3324840/93‑1 (MQ=255)

                                                                       gagaAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGt                 >  1:6084501/1‑93 (MQ=255)

                                                                        agaAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTc                <  1:2174397/93‑1 (MQ=255)

                                                                        agaAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTc                <  2:3685930/93‑1 (MQ=255)

                                                                         gaAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTcc               >  1:5503603/1‑93 (MQ=255)

                                                                         gaAACTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTcc               >  1:90989/1‑93 (MQ=255)

                                                                          aaaCTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCa              >  2:3945453/1‑93 (MQ=255)

                                                                           aaCTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCaa             >  2:3719454/1‑93 (MQ=255)

                                                                            aCTCTTCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCaaa            >  2:5535694/1‑93 (MQ=255)

                                                                                ttCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGt        >  2:1894958/1‑93 (MQ=255)

                                                                                ttCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGt        >  2:5774002/1‑93 (MQ=255)

                                                                                 tCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGtt       <  1:4097692/93‑1 (MQ=255)

                                                                                 tCGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGtt       <  1:351617/93‑1 (MQ=255)

                                                                                  cGTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGttt      <  2:1473944/93‑1 (MQ=255)

                                                                                   gTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGtttt     <  1:1177718/93‑1 (MQ=255)

                                                                                   gTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGtttt     <  2:5280579/93‑1 (MQ=255)

                                                                                   gTAGCAGCATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGtttt     >  2:4599212/1‑93 (MQ=255)

                                                                                     agcagcATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTca   <  2:5087524/93‑1 (MQ=255)

                                                                                      gcagcaTGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTcac  >  2:6245285/1‑93 (MQ=255)

                                                                                      gcagcaTGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTcac  >  1:1280708/1‑93 (MQ=255)

AACTGCTTGAGCGTCATGGTTATGCCTTCAATGAGTTGGATCTTGGCAAACGCGAGCCGGTTACCGAGGAAGAGAAACTCTTCGTAGCAGTATGCCGTGGCGAACGTGAGCCAGTGACAGAAGCAGAACGCGTGTGGTCCAAGTATATGACGCGTATTAAGCGTCCAAAACGTTTTCAC  >  NC_000913/3945806‑3945984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`