BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,406,298	A→G	Q689Q (CAA→CAG)	b4179 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,406,298	0	A	G	100.0%	812.4 / NA	251	Q689Q (CAA→CAG)	b4179	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (154/97); total (154/97)

Only 100 of 253 total aligned reads displayed.

CTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAACGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAGCGCAA  >  NC_000913/4406208‑4406387

 ttcGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAgcgc                                                                                        >  1:2139979/1‑93 (MQ=255)

  tcGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGcc                                                                                       >  2:635472/1‑93 (MQ=255)

  tcGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGcc                                                                                       <  2:5157348/93‑1 (MQ=255)

    gtccgtcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTg                                                                                     >  1:961729/1‑93 (MQ=255)

     tccgtcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGa                                                                                    >  1:6246239/1‑93 (MQ=255)

      ccgtcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGAt                                                                                   <  1:5858774/93‑1 (MQ=255)

       cgtcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATg                                                                                  >  2:4257927/1‑93 (MQ=255)

        ggcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTGTCTTCGCTGGACATTGACTACTATCTCTTTGACTAGGGAGGGCAGCGCCTTATgg                                                                                 >  1:6306187/3‑93 (MQ=255)

         tcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATggg                                                                                >  2:5198655/1‑93 (MQ=255)

         tcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATggg                                                                                <  2:1597350/93‑1 (MQ=255)

         tcTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATggg                                                                                <  1:2705984/93‑1 (MQ=255)

           tGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCCCTTTGAGCAGGTAGGGCAGCGACTGATggggg                                                                              >  2:938463/1‑93 (MQ=255)

            ggACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGa                                                                             >  2:1237546/1‑93 (MQ=255)

             gacgacTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGaa                                                                            >  1:3551389/1‑93 (MQ=255)

             gacgacTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGaa                                                                            >  1:1119238/1‑93 (MQ=255)

                gacTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATcc                                                                         >  2:3458018/1‑93 (MQ=255)

                gacTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATcc                                                                         <  1:4104513/93‑1 (MQ=255)

                gacTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATcc                                                                         <  2:2553202/93‑1 (MQ=255)

                gacTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATcc                                                                         <  2:5648444/93‑1 (MQ=255)

                 acTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACTAGGTAGGGCAGCGCCTGATGGGGGAATcaa                                                                        >  1:2070348/1‑91 (MQ=255)

                 acTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGGATCCa                                                                        >  2:1120445/1‑93 (MQ=255)

                 acTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCa                                                                        >  2:5688550/1‑93 (MQ=255)

                 acTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCa                                                                        >  1:1832829/1‑93 (MQ=255)

                 acTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCa                                                                        >  1:4208961/1‑93 (MQ=255)

                  cTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAg                                                                       >  2:3598200/1‑93 (MQ=255)

                   ttGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGc                                                                      >  1:1448344/1‑93 (MQ=255)

                   ttGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGc                                                                      >  2:5974959/1‑93 (MQ=255)

                     gTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGCATCCAGCgg                                                                    >  2:454028/1‑93 (MQ=255)

                      ttCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGc                                                                   >  1:2434799/1‑93 (MQ=255)

                      ttCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGc                                                                   >  1:6093852/1‑93 (MQ=255)

                        cATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCa                                                                 >  1:1013884/1‑93 (MQ=255)

                        cATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCa                                                                 <  1:1082583/93‑1 (MQ=255)

                        cATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCa                                                                 <  1:300573/93‑1 (MQ=255)

                         aTTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAg                                                                >  1:5033012/1‑93 (MQ=255)

                            gATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACt                                                             >  2:4364621/1‑93 (MQ=255)

                             aTGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACtt                                                            <  1:2443827/93‑1 (MQ=255)

                              tggtctggtcCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTa                                                           <  2:4729710/93‑1 (MQ=255)

                                gtctggtcCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATc                                                         <  2:2302425/93‑1 (MQ=255)

                                gtctggtcCATGTCTCTTCGCTGGACAATAACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATc                                                         >  2:5998410/1‑93 (MQ=255)

                                  ctggtcCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGc                                                       <  2:4224627/93‑1 (MQ=255)

                                  ctggtcCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGc                                                       >  1:133514/1‑93 (MQ=255)

                                    ggtcCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCt                                                     >  1:3886575/1‑93 (MQ=255)

                                     gtcCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTg                                                    <  1:4798614/93‑1 (MQ=255)

                                      tcCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTgg                                                   <  2:6260036/93‑1 (MQ=255)

                                      tcCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTgg                                                   >  2:4868986/1‑93 (MQ=255)

                                        cATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGc                                                 >  2:2942512/1‑93 (MQ=255)

                                        cATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGc                                                 >  2:4382952/1‑93 (MQ=255)

                                            tctcTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATc                                             >  2:1837307/1‑93 (MQ=255)

                                            tctcTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATc                                             <  1:3720704/93‑1 (MQ=255)

                                              tctTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATcgc                                           >  1:1744905/1‑93 (MQ=255)

                                               ctTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATcgcg                                          >  2:4633236/1‑93 (MQ=255)

                                               ctTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATcgcg                                          <  2:1494436/93‑1 (MQ=255)

                                               ctTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATcgcg                                          <  1:2512412/93‑1 (MQ=255)

                                                ttCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGt                                         <  1:3474294/93‑1 (MQ=255)

                                                    cTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGaa                                     >  2:493162/1‑93 (MQ=255)

                                                    cTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGaa                                     >  1:5170619/1‑93 (MQ=255)

                                                     tGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAg                                    >  1:336784/1‑93 (MQ=255)

                                                     tGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAg                                    >  2:2330024/1‑93 (MQ=255)

                                                       gACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGtt                                  <  2:5423905/93‑1 (MQ=255)

                                                       gACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGtt                                  <  1:3948477/93‑1 (MQ=255)

                                                       gACAATGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGtt                                  <  1:4408273/93‑1 (MQ=255)

                                                          aaTGACTACTATCGCTTTGCCCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTcgc                               <  2:3373454/93‑1 (MQ=255)

                                                           aTGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGTGCGATCGCGTGGGAGTTcgcg                              >  2:1098271/1‑93 (MQ=255)

                                                           aTGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTcgcg                              >  1:2907031/1‑93 (MQ=255)

                                                           aTGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTcgcg                              >  1:5949884/1‑93 (MQ=255)

                                                            tGACTACTATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGt                             >  1:3233327/1‑93 (MQ=255)

                                                              actactATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCg                           >  1:2251299/1‑93 (MQ=255)

                                                              actactATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCg                           >  2:4453648/1‑93 (MQ=255)

                                                              actactATCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCg                           >  1:835566/1‑93 (MQ=255)

                                                               ctactaTCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGCTCGCGTCGa                          >  1:3280182/1‑93 (MQ=255)

                                                                tactaTCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGaa                         <  2:5766235/93‑1 (MQ=255)

                                                                tactaTCGCTTTGACCACGCAGGGCAGCGCCTTCTGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGCTCgcggcgga                         >  2:3124178/1‑91 (MQ=255)

                                                                 actaTCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAg                        >  2:3982437/1‑93 (MQ=255)

                                                                  ctaTCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGc                       >  1:5779545/1‑93 (MQ=255)

                                                                  ctaTCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGc                       <  1:3348116/93‑1 (MQ=255)

                                                                  ctaTCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGc                       <  1:4472556/93‑1 (MQ=255)

                                                                    aTCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCgg                     >  2:5841412/1‑93 (MQ=255)

                                                                     tCGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGt                    >  1:1936207/1‑93 (MQ=255)

                                                                      cGCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGtt                   <  1:4842701/93‑1 (MQ=255)

                                                                       gCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGttc                  >  2:4477566/1‑92 (MQ=255)

                                                                       gCTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTa                  >  1:801728/1‑93 (MQ=255)

                                                                        cTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTat                 >  1:3695729/1‑92 (MQ=255)

                                                                        cTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTaa                 >  2:1714835/1‑93 (MQ=255)

                                                                        cTTTGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTaa                 >  2:1304015/1‑93 (MQ=255)

                                                                         tttGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCCGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAat                >  2:3747193/1‑93 (MQ=255)

                                                                         tttGACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAat                >  2:2880305/1‑93 (MQ=255)

                                                                          ttGACCAGGGAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGGGATCGCGTGGAAGTTCGCGTCGAAGCGGGTAata               >  2:807441/1‑93 (MQ=255)

                                                                            gACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATg             >  2:2748913/1‑93 (MQ=255)

                                                                            gACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATg             <  1:5604104/93‑1 (MQ=255)

                                                                            gACCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATg             >  1:1199459/1‑93 (MQ=255)

                                                                             aCCAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATgg            >  1:2725433/1‑93 (MQ=255)

                                                                              ccAGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGa           >  1:5507843/1‑93 (MQ=255)

                                                                                aGGTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACg         >  1:1884022/1‑93 (MQ=255)

                                                                                 ggTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGa        >  1:520443/1‑93 (MQ=255)

                                                                                 ggTAGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGa        >  1:234835/1‑93 (MQ=255)

                                                                                    aGGGCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAgcg     >  2:5054190/1‑93 (MQ=255)

                                                                                     gggCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATTGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAgcgc    >  2:5527116/1‑93 (MQ=255)

                                                                                     gggCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAgcgc    <  2:415591/93‑1 (MQ=255)

                                                                                       gCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAGCGCaa  >  2:6174387/1‑93 (MQ=255)

                                                                                       gCAGCGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAGCGCaa  <  2:3501662/93‑1 (MQ=255)

CTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAACGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAGCGCAA  >  NC_000913/4406208‑4406387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`