BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	689,228	T→C	S293G (AGC→GGC)	lnt ←	apolipoprotein N‑acyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	689,228	0	T	C	100.0%	695.3 / NA	216	S293G (AGC→GGC)	lnt	apolipoprotein N‑acyltransferase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (112/104); total (112/104)

Only 100 of 223 total aligned reads displayed.

CACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAA  >  NC_000913/689138‑689317

cACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCAc                                                                                         >  2:1543961/1‑93 (MQ=255)

 aCCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCAcc                                                                                        >  1:2948887/1‑93 (MQ=255)

  ccTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCt                                                                                       >  2:6246199/1‑93 (MQ=255)

  ccTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCt                                                                                       >  2:1179358/1‑93 (MQ=255)

   cTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCtt                                                                                      >  1:3724199/1‑93 (MQ=255)

   cTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCtt                                                                                      <  1:3128348/93‑1 (MQ=255)

   cTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCtt                                                                                      <  1:4315111/93‑1 (MQ=255)

    tttACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCttt                                                                                     >  2:4027349/1‑93 (MQ=255)

    tttACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCttt                                                                                     >  2:304295/1‑93 (MQ=255)

     ttACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTa                                                                                    >  2:4682333/1‑93 (MQ=255)

         ccAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCAc                                                                                <  1:555333/93‑1 (MQ=255)

          cAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACg                                                                               >  2:2694454/1‑93 (MQ=255)

            gCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCa                                                                             >  1:6243812/1‑93 (MQ=255)

            gCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCa                                                                             >  1:5648320/1‑93 (MQ=255)

            gCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCa                                                                             >  1:1364736/1‑93 (MQ=255)

              gTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAAc                                                                           <  1:509200/93‑1 (MQ=255)

              gTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAAc                                                                           <  1:3877895/93‑1 (MQ=255)

              gTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAAc                                                                           <  2:894364/93‑1 (MQ=255)

                  tgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCAc                                                                       <  2:3060199/93‑1 (MQ=255)

                   gatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCAcc                                                                      >  2:2488857/1‑93 (MQ=255)

                    atgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTCAGACGCGCGTCGACCATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCg                                                                     >  1:1920409/1‑93 (MQ=255)

                     tgGTGTTGTAGGTATCGTAGCTGTTTTGCTTATTGATACCCGCGTCGACAATCCCGGTTGCCAGCGAGCCTCCTTTATCACGCAACTCACCGt                                                                    <  1:5799054/93‑1 (MQ=255)

                     tgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGt                                                                    >  2:3160264/1‑93 (MQ=255)

                       gtgtTGTAGGTATCGTAGCGGGTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCATcc                                                                  >  2:1613360/1‑93 (MQ=255)

                         gttgtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAg                                                                >  1:2580596/1‑93 (MQ=255)

                         gttgtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAg                                                                >  1:47471/1‑93 (MQ=255)

                         gttgtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAg                                                                <  2:4823816/93‑1 (MQ=255)

                          ttgtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCact                                                               >  2:4934890/1‑91 (MQ=255)

                          ttgtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGt                                                               <  2:607045/93‑1 (MQ=255)

                             tAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCt                                                            >  1:3511282/1‑93 (MQ=255)

                             tAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCt                                                            >  1:3075490/1‑93 (MQ=255)

                                gTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTACCACGCAACTCACCGTCCAGTGCTTTg                                                         >  2:1937045/1‑93 (MQ=255)

                                 tATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGa                                                        <  2:5646055/93‑1 (MQ=255)

                                 tATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGa                                                        >  1:4401921/1‑93 (MQ=255)

                                  aTCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAg                                                       >  2:3793250/1‑93 (MQ=255)

                                   tCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAgg                                                      <  1:67038/93‑1 (MQ=255)

                                   tCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAgg                                                      <  2:289626/93‑1 (MQ=255)

                                   tCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAgg                                                      <  2:549710/93‑1 (MQ=255)

                                     gTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGaa                                                    <  2:5810335/93‑1 (MQ=255)

                                      tAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAAc                                                   <  2:5967098/93‑1 (MQ=255)

                                      tAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAAc                                                   >  1:6181980/1‑93 (MQ=255)

                                      tAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAAc                                                   >  1:2892279/1‑93 (MQ=255)

                                         cGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGt                                                <  1:3186788/93‑1 (MQ=255)

                                          ggTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGtt                                               <  1:1746021/93‑1 (MQ=255)

                                           gTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTg                                              >  2:172549/1‑93 (MQ=255)

                                           gTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTg                                              >  1:5182892/1‑93 (MQ=255)

                                           gTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTg                                              >  2:5468256/1‑93 (MQ=255)

                                            ttCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGc                                             <  2:1351853/93‑1 (MQ=255)

                                             tCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCt                                            <  2:2295793/93‑1 (MQ=255)

                                             tCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCt                                            <  2:34061/93‑1 (MQ=255)

                                               tGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGa                                          >  2:5904732/1‑93 (MQ=255)

                                               tGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGa                                          >  2:167774/1‑93 (MQ=255)

                                               tGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGa                                          <  1:4948746/93‑1 (MQ=255)

                                                 cTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGAtt                                        >  1:4154605/1‑93 (MQ=255)

                                                  ttATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTa                                       >  1:3094828/1‑93 (MQ=255)

                                                   tATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTaa                                      >  1:4522278/1‑93 (MQ=255)

                                                         gaCGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCa                                <  1:2117729/93‑1 (MQ=255)

                                                           cgcgcgTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGa                              <  1:5885317/93‑1 (MQ=255)

                                                           cgcgcgTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGa                              >  2:6266346/1‑93 (MQ=255)

                                                           cgcgcgTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGa                              <  2:4122726/93‑1 (MQ=255)

                                                           cgcgcgTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGa                              <  1:4734539/93‑1 (MQ=255)

                                                            gcgcgTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGAt                             <  1:2162506/93‑1 (MQ=255)

                                                               cgTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCgg                          <  2:5313584/93‑1 (MQ=255)

                                                                gTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGt                         <  1:5488415/93‑1 (MQ=255)

                                                                 tCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGtt                        >  2:5653291/1‑93 (MQ=255)

                                                                 tCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGtt                        >  1:6023665/1‑93 (MQ=255)

                                                                  cGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTa                       <  2:1915979/93‑1 (MQ=255)

                                                                  cGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTa                       <  1:816220/93‑1 (MQ=255)

                                                                  cGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTa                       <  2:445726/93‑1 (MQ=255)

                                                                  cGACAAGCCCGGTTACCAGCGAGCCACCTTTATCACGCAACGCGCCGTCCAGTGCTGTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTa                       <  1:4596719/93‑1 (MQ=255)

                                                                   gACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTAt                      >  1:3962077/1‑93 (MQ=255)

                                                                    aCAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATc                     <  1:1628650/93‑1 (MQ=255)

                                                                    aCAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATc                     <  2:4340917/93‑1 (MQ=255)

                                                                      aaTCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGc                   <  1:1452692/93‑1 (MQ=255)

                                                                      aaTCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGc                   <  2:3911021/93‑1 (MQ=255)

                                                                      aaTCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGGTGCTGATTAATTTCCAGATCGGGTATCGc                   >  2:708348/1‑93 (MQ=255)

                                                                        tCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTTCAGATCTGTTATCGCCg                 >  2:4601681/1‑93 (MQ=255)

                                                                        tCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCg                 >  2:5591749/1‑93 (MQ=255)

                                                                        tCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCg                 >  2:6174277/1‑93 (MQ=255)

                                                                         cccGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGa                >  2:4392922/1‑93 (MQ=255)

                                                                         cccGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGa                <  1:2259214/93‑1 (MQ=255)

                                                                         cccGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGa                <  2:2628484/93‑1 (MQ=255)

                                                                         cccGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGa                <  2:2351412/93‑1 (MQ=255)

                                                                          ccGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGAc               >  2:5233737/1‑93 (MQ=255)

                                                                            ggTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTc             <  2:3701757/93‑1 (MQ=255)

                                                                             gTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTcc            >  1:2411743/1‑93 (MQ=255)

                                                                             gTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTca            >  1:5864100/1‑92 (MQ=255)

                                                                              ttACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCg           <  1:1312806/93‑1 (MQ=255)

                                                                              ttACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCg           <  2:2228655/93‑1 (MQ=255)

                                                                                aCCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGc         >  2:5631635/1‑93 (MQ=255)

                                                                                 ccAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGcc        >  2:2060488/1‑93 (MQ=255)

                                                                                  cAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCa       >  1:5411319/1‑93 (MQ=255)

                                                                                   aGCGAGCCACCTTTATCGCGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAg      >  1:3595805/1‑93 (MQ=255)

                                                                                    gCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGa     >  1:6099638/1‑93 (MQ=255)

                                                                                      gAGCCACCTTTATCACGCAACTCCCCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATa   >  1:4567375/1‑93 (MQ=255)

                                                                                      gAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATa   >  1:2706218/1‑93 (MQ=255)

                                                                                      gAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATa   <  1:3357581/93‑1 (MQ=255)

                                                                                       aGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATaa  <  1:593953/93‑1 (MQ=255)

                                                                                       aGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATaa  >  1:5235554/1‑93 (MQ=255)

                                                                                       aGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATaa  <  1:4065176/93‑1 (MQ=255)

CACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAA  >  NC_000913/689138‑689317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`