BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	931,267	T→C	T3A (ACG→GCG)	trxB ←	thioredoxin reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	931,267	0	T	C	100.0%	715.3 / NA	223	T3A (ACG→GCG)	trxB	thioredoxin reductase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (98/125); total (98/125)

Only 100 of 227 total aligned reads displayed.

CAGGTTGCAGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGTGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGTT  >  NC_000913/931177‑931355

caggttgcaggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCgcgc                                                                                        >  1:5929407/1‑93 (MQ=255)

  ggttgcaggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGccc                                                                                      >  1:1528311/1‑93 (MQ=255)

    ttgcaggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCAt                                                                                    <  1:5521780/93‑1 (MQ=255)

     tgcaggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATg                                                                                   >  2:3051942/1‑93 (MQ=255)

      gcaggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATga                                                                                  >  2:2108907/1‑93 (MQ=255)

      gcaggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATga                                                                                  >  2:460286/1‑93 (MQ=255)

        aggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATgaga                                                                                >  1:5198052/1‑93 (MQ=255)

         ggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGAt                                                                               >  1:4990849/1‑93 (MQ=255)

         ggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGAt                                                                               >  1:2853433/1‑93 (MQ=255)

          gttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATc                                                                              >  2:5223910/1‑93 (MQ=255)

             ggCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATcccc                                                                           >  2:222734/1‑93 (MQ=255)

             ggCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATcccc                                                                           <  1:2766284/93‑1 (MQ=255)

               cgcgcgcCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCAt                                                                         <  2:1241664/93‑1 (MQ=255)

                   cgccgcGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAgtt                                                                     <  2:2386232/93‑1 (MQ=255)

                    gccgcGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGATTGGTCGCGCCCATGAGATCCCCATAgttg                                                                    >  2:909834/1‑93 (MQ=255)

                       gcgTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGttgttg                                                                 >  2:4520385/1‑93 (MQ=255)

                       gcgTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGttgttg                                                                 >  2:427550/1‑93 (MQ=255)

                       gcgTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGttgttg                                                                 <  2:1000251/93‑1 (MQ=255)

                        cgTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCCGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTgg                                                                >  2:3026705/1‑93 (MQ=255)

                         gTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGc                                                               >  1:5386440/1‑93 (MQ=255)

                         gTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGc                                                               >  1:3897830/1‑93 (MQ=255)

                         gTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGc                                                               >  2:5312094/1‑93 (MQ=255)

                         gTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGc                                                               >  2:5572588/1‑93 (MQ=255)

                            gACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGa                                                            >  1:1697646/1‑93 (MQ=255)

                               agcagcGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACaa                                                         >  1:2818845/1‑93 (MQ=255)

                               agcagcGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACaa                                                         <  1:1452444/93‑1 (MQ=255)

                               agcagcGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACaa                                                         <  1:5959963/93‑1 (MQ=255)

                                gcagcGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAAt                                                        <  1:3089847/93‑1 (MQ=255)

                                gcagcGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAAt                                                        <  2:4455207/93‑1 (MQ=255)

                                 cagcGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATg                                                       <  1:6145110/93‑1 (MQ=255)

                                   gcGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATggg                                                     >  1:5345947/1‑93 (MQ=255)

                                       tgtATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACACTGGGCAgg                                                 <  2:6161604/93‑1 (MQ=255)

                                         tATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGAt                                               >  1:1329524/1‑93 (MQ=255)

                                          aTCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTTTTTGGTCGCGCCCATGAGATACCCATAGTTGTTGGCAGACAATGGGCAGGAtt                                              >  1:4788036/1‑93 (MQ=255)

                                          aTCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGAtt                                              >  1:3706371/1‑93 (MQ=255)

                                           tCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTg                                             <  2:5466097/93‑1 (MQ=255)

                                           tCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTg                                             >  1:1504546/1‑93 (MQ=255)

                                           tCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTg                                             <  1:3029881/93‑1 (MQ=255)

                                           tCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTg                                             >  1:2982184/1‑93 (MQ=255)

                                            cccGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGt                                            <  2:3780856/93‑1 (MQ=255)

                                            cccGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGt                                            >  1:1136349/1‑93 (MQ=255)

                                            cccGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGt                                            >  1:4753459/1‑93 (MQ=255)

                                             ccgccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTa                                           >  1:4611092/1‑93 (MQ=255)

                                             ccgccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTa                                           <  1:2408475/93‑1 (MQ=255)

                                              cgccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAg                                          <  2:4855035/93‑1 (MQ=255)

                                              cgccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAg                                          >  2:2659025/1‑93 (MQ=255)

                                              cgccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAg                                          >  2:1093909/1‑93 (MQ=255)

                                              cgccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAg                                          <  1:1960366/93‑1 (MQ=255)

                                               gccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAgg                                         >  1:5077874/1‑93 (MQ=255)

                                               gccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAgg                                         >  1:2891448/1‑93 (MQ=255)

                                               gccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAgg                                         <  2:5154064/93‑1 (MQ=255)

                                                ccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAggg                                        <  2:3083456/93‑1 (MQ=255)

                                                    gCCTGAGCCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAAtt                                    <  2:3415068/93‑1 (MQ=255)

                                                       tGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTAc                                 <  1:34546/93‑1 (MQ=255)

                                                        gAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACa                                <  2:5080469/93‑1 (MQ=255)

                                                        gAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACa                                <  2:2464616/93‑1 (MQ=255)

                                                         aaCCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAg                               <  2:4993097/93‑1 (MQ=255)

                                                          aCCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGGCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGGATTTACAGa                              >  1:2645296/1‑93 (MQ=255)

                                                          aCCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGa                              >  1:2922181/1‑93 (MQ=255)

                                                          aCCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGa                              <  2:688975/93‑1 (MQ=255)

                                                          aCCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGa                              <  1:5561449/93‑1 (MQ=255)

                                                           cccAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGAc                             <  1:2015166/93‑1 (MQ=255)

                                                           cccAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGAc                             >  1:5673448/1‑93 (MQ=255)

                                                            ccAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACg                            >  1:3932547/1‑93 (MQ=255)

                                                             cAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGt                           >  1:6249712/1‑93 (MQ=255)

                                                              tggttAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGCTCCCCATTGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTa                          <  1:6301973/89‑1 (MQ=255)

                                                              aGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTa                          <  2:636528/93‑1 (MQ=255)

                                                              aGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTa                          >  1:813163/1‑93 (MQ=255)

                                                              aGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTa                          <  2:3458566/93‑1 (MQ=255)

                                                              aGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGGAGGGAATTTACAGACGTa                          >  2:3924485/1‑93 (MQ=255)

                                                               ggATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTaa                         >  2:4769626/1‑93 (MQ=255)

                                                                gATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTaaa                        <  1:3886115/93‑1 (MQ=255)

                                                                gATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTaaa                        <  1:3396910/93‑1 (MQ=255)

                                                                gATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTaaa                        <  1:919288/93‑1 (MQ=255)

                                                                 aTAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTaaaa                       >  2:2884237/1‑93 (MQ=255)

                                                                  tAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTaaaaa                      <  1:2498051/93‑1 (MQ=255)

                                                                    aGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTaaaaaaa                    >  1:1245847/1‑93 (MQ=255)

                                                                     gCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAag                   <  1:3401817/93‑1 (MQ=255)

                                                                     gCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAag                   <  1:4355201/93‑1 (MQ=255)

                                                                        gTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGt                >  1:5850311/1‑93 (MQ=255)

                                                                         tttACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTa               >  1:1056644/1‑93 (MQ=255)

                                                                          ttACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTAt              <  2:3846066/93‑1 (MQ=255)

                                                                          ttACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTAt              <  2:1632841/93‑1 (MQ=255)

                                                                            aCTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGa            <  2:1899139/93‑1 (MQ=255)

                                                                            aCTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGa            <  1:2533946/93‑1 (MQ=255)

                                                                             cTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGAc           <  1:3592363/93‑1 (MQ=255)

                                                                             cTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGAc           <  2:5876688/93‑1 (MQ=255)

                                                                             cTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGAc           <  2:5690329/93‑1 (MQ=255)

                                                                               gtgtTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGa         <  2:3305142/93‑1 (MQ=255)

                                                                                tgtTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAt        >  1:4661838/1‑93 (MQ=255)

                                                                                tgtTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAt        <  1:4201102/93‑1 (MQ=255)

                                                                                 gtTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAtt       >  2:563886/1‑93 (MQ=255)

                                                                                 gtTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAtt       <  2:1594138/93‑1 (MQ=255)

                                                                                  tttGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAttt      <  2:1845499/93‑1 (MQ=255)

                                                                                  tttGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAttt      <  2:3374423/93‑1 (MQ=255)

                                                                                   ttGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAtttt     <  1:2282700/93‑1 (MQ=255)

                                                                                      gTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGTGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGtt  <  2:590281/93‑1 (MQ=255)

                                                                                      gTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGtt  >  2:3568609/1‑93 (MQ=255)

                                                                                      gTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGtt  >  2:6192140/1‑93 (MQ=255)

                                                                                      gTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGtt  >  1:4094040/1‑93 (MQ=255)

CAGGTTGCAGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGTGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGTT  >  NC_000913/931177‑931355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`