BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,102,451	A→G	intergenic (‑32/+435)	csgD ← / ← b4518	CsgD/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,102,451	0	A	G	100.0%	574.0 / NA	176	intergenic (‑32/+435)	csgD/b4518	CsgD/hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (76/100); total (76/100)

Only 100 of 181 total aligned reads displayed.

GAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTA  >  NC_000913/1102361‑1102540

gaagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAACCCCCGC‑TTTTTTTATTGATCGCACGcc                                                                                         <  1:487092/93‑1 (MQ=255)

gaagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGcc                                                                                         <  1:1641883/93‑1 (MQ=255)

gaagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGcc                                                                                         <  2:4915545/93‑1 (MQ=255)

 aagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCt                                                                                        >  1:1472979/1‑93 (MQ=255)

 aagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCt                                                                                        <  2:5197289/93‑1 (MQ=255)

  agaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTg                                                                                       <  2:5924878/93‑1 (MQ=255)

  agaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTg                                                                                       >  2:3997545/1‑93 (MQ=255)

   gaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTTAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGa                                                                                      >  2:5335226/1‑93 (MQ=255)

   gaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGa                                                                                      <  1:4597368/93‑1 (MQ=255)

   gaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGa                                                                                      >  1:749305/1‑93 (MQ=255)

     tttAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACa                                                                                    <  2:2614162/93‑1 (MQ=255)

      ttAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAg                                                                                   <  1:4231435/93‑1 (MQ=255)

       tAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGc                                                                                  >  2:895667/1‑93 (MQ=255)

       tAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGc                                                                                  <  1:4364605/93‑1 (MQ=255)

        aGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCt                                                                                 >  1:5135634/1‑93 (MQ=255)

             tCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCctc                                                                            >  1:5959244/1‑93 (MQ=255)

              catcaaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCctct                                                                           <  1:416768/90‑1 (MQ=255)

               aacaaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTa                                                                          <  1:545988/93‑1 (MQ=255)

                acaaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaa                                                                         >  1:2320070/1‑93 (MQ=255)

                acaaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaa                                                                         >  1:2547251/1‑93 (MQ=255)

                 caaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaaa                                                                        >  2:2316035/1‑93 (MQ=255)

                 caaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaaa                                                                        >  2:2216600/1‑93 (MQ=255)

                  aataatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaaaa                                                                       <  2:5514290/93‑1 (MQ=255)

                    taatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATa                                                                     >  2:1225797/1‑93 (MQ=255)

                     aatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAg                                                                    >  2:514520/1‑93 (MQ=255)

                     aatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAg                                                                    >  1:4071556/1‑93 (MQ=255)

                      atGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGa                                                                   >  1:2152203/1‑93 (MQ=255)

                      atGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGa                                                                   <  2:5274880/93‑1 (MQ=255)

                      atGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGa                                                                   <  1:4094360/93‑1 (MQ=255)

                      atGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGa                                                                   <  1:5355871/93‑1 (MQ=255)

                      atGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGa                                                                   <  2:4483488/93‑1 (MQ=255)

                        gTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAACTAGAAg                                                                 >  1:5251670/1‑93 (MQ=255)

                        gTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAg                                                                 >  1:1131345/1‑93 (MQ=255)

                        gTATGACCATGAATACTATGGACTACATTAAACATGATGAACCCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAg                                                                 <  1:2843699/93‑1 (MQ=255)

                         tATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGc                                                                >  2:4592219/1‑93 (MQ=255)

                           tGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCAc                                                              <  1:2462851/93‑1 (MQ=255)

                            gACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGCTCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCAcc                                                             >  1:727099/1‑93 (MQ=255)

                            gACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTACAATAGAAGCAcc                                                             >  2:1563178/1‑93 (MQ=255)

                             aCCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCa                                                            <  1:5364425/93‑1 (MQ=255)

                               cATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGa                                                          <  1:1900767/93‑1 (MQ=255)

                               cATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGa                                                          >  1:2660630/1‑93 (MQ=255)

                                 tGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAg                                                        >  1:3561123/1‑93 (MQ=255)

                                 tGAATACTATGGACGTCATTAAACATGATGAAACCCCGC‑TTTTTTGATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAg                                                        <  1:3043722/93‑1 (MQ=255)

                                   aaTACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTa                                                      >  1:6287099/1‑93 (MQ=255)

                                    aTACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTAc                                                     <  2:2038457/93‑1 (MQ=255)

                                     tACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACt                                                    >  2:3133152/1‑93 (MQ=255)

                                      aCTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTg                                                   >  2:582760/1‑93 (MQ=255)

                                      aCTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTg                                                   >  2:4704140/1‑93 (MQ=255)

                                       cTATGGACTTCATTAAACATGATGAACCCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGa                                                  <  1:730700/93‑1 (MQ=255)

                                       cTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGa                                                  >  2:1451315/1‑93 (MQ=255)

                                       cTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGa                                                  >  1:113103/1‑93 (MQ=255)

                                       cTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGa                                                  <  1:3696290/93‑1 (MQ=255)

                                       cTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGa                                                  >  1:3169875/1‑93 (MQ=255)

                                       cTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGa                                                  <  1:5884193/93‑1 (MQ=255)

                                        tATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGAc                                                 <  1:5158198/93‑1 (MQ=255)

                                         aTGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACa                                                >  1:6093011/1‑93 (MQ=255)

                                         aTGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACa                                                >  2:3812233/1‑93 (MQ=255)

                                           ggACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGa                                              <  2:1819046/93‑1 (MQ=255)

                                           ggACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGa                                              <  1:4005440/93‑1 (MQ=255)

                                            gACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGAt                                             >  1:2009606/1‑93 (MQ=255)

                                            gACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGAt                                             <  1:6079027/93‑1 (MQ=255)

                                              cTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGt                                           <  2:11077/93‑1 (MQ=255)

                                               ttCATTAAACATGATGAAACCCCGCTTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGt                                           <  1:5538871/93‑1 (MQ=255)

                                               ttCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGtt                                          >  2:725000/1‑93 (MQ=255)

                                                   ttAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCAc                                      >  1:1647584/1‑93 (MQ=255)

                                                   ttAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCAc                                      >  1:5579869/1‑93 (MQ=255)

                                                      aaCATGATGAAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCActgc                                   <  1:2475633/93‑1 (MQ=255)

                                                          tgatgaAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCtgtg                               >  1:4566020/1‑93 (MQ=255)

                                                            atgaAACTCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCtgtgtg                             <  2:3486827/93‑1 (MQ=255)

                                                            atgaAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCtgtgtg                             >  2:5582612/1‑93 (MQ=255)

                                                             tgaAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTgtgtgt                            <  1:95735/93‑1 (MQ=255)

                                                              gaAACCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTgta                           >  2:4987667/1‑93 (MQ=255)

                                                               aaaCCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTgtag                          >  2:3409956/1‑93 (MQ=255)

                                                               aaaCCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTgtag                          <  2:4257375/93‑1 (MQ=255)

                                                               aaaCCCCGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTgtag                          <  1:3166436/93‑1 (MQ=255)

                                                                  ccccGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaa                       <  2:1587885/93‑1 (MQ=255)

                                                                  ccccGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaa                       <  2:4644344/93‑1 (MQ=255)

                                                                   cccGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaat                      <  1:1835788/93‑1 (MQ=255)

                                                                     cGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaataa                    >  2:5432017/1‑93 (MQ=255)

                                                                     cGC‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaataa                    <  2:4361468/93‑1 (MQ=255)

                                                                       c‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAAt                  >  1:1392288/1‑93 (MQ=255)

                                                                       c‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAAt                  <  1:1206576/93‑1 (MQ=255)

                                                                       c‑TTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAAt                  <  2:625822/93‑1 (MQ=255)

                                                                         tttttttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATc                 <  2:2775534/93‑1 (MQ=255)

                                                                           tttttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAg               <  1:5148891/93‑1 (MQ=255)

                                                                              ttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGccc            <  2:2389164/93‑1 (MQ=255)

                                                                              ttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGccc            >  2:6207917/1‑93 (MQ=255)

                                                                               tATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCt           >  1:1967232/1‑93 (MQ=255)

                                                                                aTTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGCCAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTa          <  2:5135634/93‑1 (MQ=255)

                                                                                aTTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTa          >  1:4971375/1‑93 (MQ=255)

                                                                                 ttGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTaa         <  2:3170584/93‑1 (MQ=255)

                                                                                  tGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTaaa        <  2:5386531/93‑1 (MQ=255)

                                                                                  tGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTaaa        <  1:627358/93‑1 (MQ=255)

                                                                                   gATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAt       <  2:458364/93‑1 (MQ=255)

                                                                                      cGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATggg    <  1:1770335/93‑1 (MQ=255)

                                                                                      cGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATggg    <  2:298383/93‑1 (MQ=255)

                                                                                       gCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGt   >  2:4324233/1‑93 (MQ=255)

                                                                                        cacgCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTa  >  2:5172129/1‑93 (MQ=255)

                                                                                        cacgCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTa  <  1:1722234/93‑1 (MQ=255)

                                                                                        cacgCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTa  >  1:5705655/1‑93 (MQ=255)

GAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTA  >  NC_000913/1102361‑1102540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`