BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,127,778	C→T	G239G (GGC→GGT)	mviN →	putative virulence factor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,127,778	0	C	T	100.0%	889.7 / NA	246	G239G (GGC→GGT)	mviN	putative virulence factor
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (112/134); total (112/134)

Only 100 of 252 total aligned reads displayed.

GAAGATCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGCGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTACGCCG  >  NC_000913/1127688‑1127866

 aagaTCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGtc                                                                                       <  2:2081043/93‑1 (MQ=255)

  agaTCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGtct                                                                                      >  2:6123676/1‑93 (MQ=255)

   gaTCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGtctc                                                                                     <  2:269919/93‑1 (MQ=255)

   gaTCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGtctc                                                                                     <  2:2048248/93‑1 (MQ=255)

    aTCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTctct                                                                                    >  1:4084542/1‑93 (MQ=255)

     tCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCtg                                                                                   >  2:6221976/1‑93 (MQ=255)

     tCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCtg                                                                                   <  1:1233151/93‑1 (MQ=255)

     tCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCtg                                                                                   <  1:4773746/93‑1 (MQ=255)

       ggCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCtgtg                                                                                 <  1:5669733/93‑1 (MQ=255)

       ggCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCtgtg                                                                                 <  1:1013277/93‑1 (MQ=255)

          aTGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGc                                                                              >  1:1791054/1‑93 (MQ=255)

          aTGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGAACGGCGATCCTTGGTGTCTCTGTGAGc                                                                              >  1:1950703/1‑93 (MQ=255)

           tGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGcc                                                                             <  1:5460418/93‑1 (MQ=255)

           tGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGcc                                                                             >  1:6072058/1‑93 (MQ=255)

            gCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCa                                                                            <  2:5347997/93‑1 (MQ=255)

              tGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGa                                                                          <  1:4412537/93‑1 (MQ=255)

              tGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGa                                                                          <  2:5601454/93‑1 (MQ=255)

               ggTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGAt                                                                         >  2:3753826/1‑93 (MQ=255)

               ggTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGAt                                                                         >  1:2689702/1‑93 (MQ=255)

               ggTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGAt                                                                         <  1:1889149/93‑1 (MQ=255)

               ggTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGAt                                                                         <  1:1998584/93‑1 (MQ=255)

               ggTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGAt                                                                         <  1:209183/93‑1 (MQ=255)

                gTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGAtc                                                                        <  1:3187051/93‑1 (MQ=255)

                  ccTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGAtctc                                                                      <  2:1789763/93‑1 (MQ=255)

                  ccTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGAtctc                                                                      <  2:5888793/93‑1 (MQ=255)

                  ccTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGAtctc                                                                      >  1:375280/1‑93 (MQ=255)

                  ccTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGAtctc                                                                      <  2:1557628/93‑1 (MQ=255)

                   cTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTcc                                                                     <  2:2784027/93‑1 (MQ=255)

                    tGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCt                                                                    >  2:50487/1‑93 (MQ=255)

                     gCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCtt                                                                   >  2:2710685/1‑93 (MQ=255)

                     gCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCtt                                                                   <  2:3898720/93‑1 (MQ=255)

                        gcgcATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAat                                                                <  2:1945102/93‑1 (MQ=255)

                        ccgcATTAACATCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAat                                                                <  1:532149/92‑1 (MQ=255)

                         cgcATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAatc                                                               >  2:6308424/1‑93 (MQ=255)

                             ttAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAAtcatca                                                           <  1:68037/93‑1 (MQ=255)

                             ttAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAAtcatca                                                           >  2:5582555/1‑93 (MQ=255)

                                 cTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAacac                                                       >  2:759589/1‑93 (MQ=255)

                                   tCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCa                                                     >  1:1844473/1‑93 (MQ=255)

                                     cACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCAtt                                                   <  2:1252802/93‑1 (MQ=255)

                                     cACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCAtt                                                   <  2:3848745/93‑1 (MQ=255)

                                      aCGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCAttt                                                  >  2:4690104/1‑93 (MQ=255)

                                       cGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCAtttt                                                 <  2:2240003/93‑1 (MQ=255)

                                        gATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCAttttt                                                <  2:912683/93‑1 (MQ=255)

                                        gATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCAttttt                                                <  2:5489700/93‑1 (MQ=255)

                                        gATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAACCATCAACACCAttttt                                                <  2:1660417/93‑1 (MQ=255)

                                         aTGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTg                                               >  1:3713813/1‑93 (MQ=255)

                                          tGCCGGAGCAATGCGCGTGGTGAAACAGATGTGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGc                                              >  1:2388208/1‑93 (MQ=255)

                                          agcgggAGCAATGAGGGTGGGTAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGc                                              <  1:1360486/89‑1 (MQ=255)

                                            ccGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCt                                            <  2:3583239/93‑1 (MQ=255)

                                            ccGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGAGCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCt                                            >  1:4551005/1‑93 (MQ=255)

                                             cGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTc                                           >  2:3406314/1‑93 (MQ=255)

                                             cGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTc                                           >  1:2768068/1‑93 (MQ=255)

                                              ggAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCg                                          >  1:2194077/1‑93 (MQ=255)

                                               gAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGt                                         >  1:5371223/1‑93 (MQ=255)

                                                aGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGtt                                        <  2:4406554/93‑1 (MQ=255)

                                                aGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGtt                                        <  2:1770388/93‑1 (MQ=255)

                                                 gCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGttt                                       >  1:1643914/1‑93 (MQ=255)

                                                   aaTGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCt                                     >  2:211690/1‑93 (MQ=255)

                                                   aaTGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCt                                     >  1:2982570/1‑93 (MQ=255)

                                                   aaTGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCt                                     >  1:3820247/1‑93 (MQ=255)

                                                    aTGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCtt                                    >  2:4541758/1‑93 (MQ=255)

                                                    aTGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCtt                                    <  2:2568634/93‑1 (MQ=255)

                                                    aTGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCtt                                    <  2:3477673/93‑1 (MQ=255)

                                                     tGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTg                                   >  1:4113368/1‑93 (MQ=255)

                                                        gcgTGGTGAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCtt                                <  1:936250/93‑1 (MQ=255)

                                                          gtggtgAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTcc                              >  2:5243687/1‑93 (MQ=255)

                                                             gtgAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGt                           <  1:3522707/93‑1 (MQ=255)

                                                             gtgAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGt                           <  2:5025193/93‑1 (MQ=255)

                                                              tgAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGtt                          >  1:3346134/1‑93 (MQ=255)

                                                               gAAACAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTc                         <  1:1407438/93‑1 (MQ=255)

                                                                aaaCAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCg                        <  1:4585712/93‑1 (MQ=255)

                                                                 aaCAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCgg                       <  1:315584/93‑1 (MQ=255)

                                                                  aCAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCTGTTCGgt                      >  1:3343496/1‑93 (MQ=255)

                                                                  aCAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGgt                      <  2:5763355/93‑1 (MQ=255)

                                                                  aCAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGgt                      <  1:984080/93‑1 (MQ=255)

                                                                  aCAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGgt                      >  2:3690522/1‑93 (MQ=255)

                                                                  aCAGATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGgt                      >  1:597714/1‑93 (MQ=255)

                                                                     gATGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTc                   >  2:1631916/1‑93 (MQ=255)

                                                                       tGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCtt                 <  1:1156034/93‑1 (MQ=255)

                                                                       tGGGACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCtt                 >  1:4985207/1‑93 (MQ=255)

                                                                        gggACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTg                <  1:1128012/93‑1 (MQ=255)

                                                                         ggACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTgg               >  1:4047413/1‑93 (MQ=255)

                                                                          gACCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGa              <  2:5965040/93‑1 (MQ=255)

                                                                           aCCGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGAt             <  2:4884229/93‑1 (MQ=255)

                                                                             cGGCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGt           >  1:2292873/1‑93 (MQ=255)

                                                                              ggCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTa          <  2:3026402/93‑1 (MQ=255)

                                                                              ggCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTa          <  1:2904253/93‑1 (MQ=255)

                                                                              ggCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTAAATCATCAACACCATTTTTGCCTCGTTTCTTGCTCCCGGTTCGGTGTCTTGGATGTa          <  2:3266796/93‑1 (MQ=255)

                                                                               gCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTAt         >  1:744739/1‑93 (MQ=255)

                                                                               gCGATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTAt         >  2:747524/1‑93 (MQ=255)

                                                                                 gATCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTa       <  1:5110931/93‑1 (MQ=255)

                                                                                 gATCCTTGGAGTCTCTGTGAGTCAGATGTCCTTAATCATCAACACCACTTTTGCCTCGTTTCTTGCTTCCGGGTCGGTGTCTTGGATGGATTa       >  2:5807049/1‑93 (MQ=255)

                                                                                  aTCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTAc      >  2:286950/1‑93 (MQ=255)

                                                                                   tCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTACg     >  1:5285960/1‑93 (MQ=255)

                                                                                   tCCTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTACg     >  1:4681529/1‑93 (MQ=255)

                                                                                    ccTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTACGc    >  2:1320639/1‑93 (MQ=255)

                                                                                     cTTGGTGTCTCTGTGTGCCAGATCTCCTTAATAAACAACACCACTTATGCCTCGGCTCTTGCTGCCCGCTCGGTGTCTTCTTTGTATCACGcc   >  2:2382280/1‑93 (MQ=255)

                                                                                     cTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTACGcc   >  1:4424647/1‑93 (MQ=255)

                                                                                     cTTGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTACGcc   >  2:1048972/1‑93 (MQ=255)

                                                                                      ttGGTGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTACGCCg  >  1:5896090/1‑93 (MQ=255)

GAAGATCGGCATGCTGGTCCTGCCGCGCATTAACTTCCACGATGCCGGAGCAATGCGCGTGGTGAAACAGATGGGACCGGCGATCCTTGGCGTCTCTGTGAGCCAGATCTCCTTAATCATCAACACCATTTTTGCCTCGTTTCTTGCTTCCGGTTCGGTGTCTTGGATGTATTACGCCG  >  NC_000913/1127688‑1127866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`