BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,132,875	T→C	L360P (CTG→CCG)	flgE →	hook protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,132,875	0	T	C	100.0%	551.4 / NA	172	L360P (CTG→CCG)	flgE	hook protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (63/109); total (63/109)

Only 100 of 183 total aligned reads displayed.

ACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAA  >  NC_000913/1132785‑1132964

aCAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGGACCCTGACCAACGGTGCGCCgg                                                                                         >  2:3261797/1‑93 (MQ=255)

aCAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCgg                                                                                         >  2:3081681/1‑93 (MQ=255)

 cAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGa                                                                                        <  2:5526030/93‑1 (MQ=255)

  aaCGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGaa                                                                                       <  1:4166643/93‑1 (MQ=255)

  aaCGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGACGGaa                                                                                       >  2:2067238/1‑93 (MQ=255)

   aCGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAg                                                                                      <  2:2437897/93‑1 (MQ=255)

   aCGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAAATTTGGCACCCTGACCAACGGGGCGCCGGAAg                                                                                      >  1:5421377/1‑93 (MQ=255)

     gtctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCg                                                                                    >  2:178070/1‑93 (MQ=255)

     gtctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCg                                                                                    >  1:1596337/1‑93 (MQ=255)

     gtctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCg                                                                                    >  1:6207242/1‑93 (MQ=255)

      tctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCgg                                                                                   >  1:4526759/1‑92 (MQ=255)

      tctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGt                                                                                   <  2:3388803/93‑1 (MQ=255)

      tctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGt                                                                                   >  1:555092/1‑93 (MQ=255)

       ctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTc                                                                                  >  2:5587412/1‑93 (MQ=255)

       ctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTc                                                                                  <  1:4893923/93‑1 (MQ=255)

        tggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTcc                                                                                 >  1:1962459/1‑93 (MQ=255)

        tggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTcc                                                                                 <  2:3320494/93‑1 (MQ=255)

          gtctgCGACGCAATTTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCaa                                                                               <  1:6222088/93‑1 (MQ=255)

          gtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCaa                                                                               <  2:4384806/93‑1 (MQ=255)

             tgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCCCCCTGACCAACGGTGCGCCGGAAGCGTCCAACGt                                                                            <  2:695999/93‑1 (MQ=255)

              gCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTc                                                                           <  2:1450363/93‑1 (MQ=255)

              gCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTc                                                                           <  2:5315489/93‑1 (MQ=255)

              gCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTc                                                                           <  2:1584436/93‑1 (MQ=255)

               cGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCg                                                                          >  1:885719/1‑93 (MQ=255)

                gACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGa                                                                         <  1:3605591/93‑1 (MQ=255)

                gACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGa                                                                         <  1:4469998/93‑1 (MQ=255)

                gACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGa                                                                         <  2:5976888/93‑1 (MQ=255)

                 aCGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAt                                                                        <  1:1299513/93‑1 (MQ=255)

                  cGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAtc                                                                       >  1:311680/1‑93 (MQ=255)

                     aaTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCa                                                                    <  2:1549134/93‑1 (MQ=255)

                     aaTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCa                                                                    >  1:2675570/1‑93 (MQ=255)

                      aTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAg                                                                   <  2:886450/93‑1 (MQ=255)

                      aTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAg                                                                   >  1:747772/1‑93 (MQ=255)

                       tcttctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGt                                                                  >  2:5631524/1‑93 (MQ=255)

                       tcttctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGt                                                                  <  2:5960752/93‑1 (MQ=255)

                        cttctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTa                                                                 <  1:1105906/93‑1 (MQ=255)

                         ttctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTaa                                                                >  1:2683530/1‑93 (MQ=255)

                          tctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTaaa                                                               <  1:2171407/93‑1 (MQ=255)

                          tctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTaaa                                                               >  2:1459216/1‑93 (MQ=255)

                          tctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTaaa                                                               <  1:2429147/93‑1 (MQ=255)

                          tctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTaaa                                                               <  1:71677/93‑1 (MQ=255)

                           ttggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAg                                                              <  2:1401207/92‑1 (MQ=255)

                            tggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGa                                                             <  1:108397/93‑1 (MQ=255)

                            tggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGa                                                             >  1:38216/1‑93 (MQ=255)

                            tggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGa                                                             >  1:3722136/1‑93 (MQ=255)

                             ggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGaa                                                            <  1:982540/93‑1 (MQ=255)

                             ggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGaa                                                            >  2:4293096/1‑93 (MQ=255)

                              gcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAAc                                                           <  2:4813350/93‑1 (MQ=255)

                              gcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAAc                                                           <  2:4173925/93‑1 (MQ=255)

                               cgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACt                                                          <  2:1908292/93‑1 (MQ=255)

                               cgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACt                                                          <  1:2253747/93‑1 (MQ=255)

                                gtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTg                                                         <  1:3791343/93‑1 (MQ=255)

                                gtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTg                                                         >  1:2449236/1‑93 (MQ=255)

                                gtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTg                                                         <  2:4590277/93‑1 (MQ=255)

                                 gggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTgg                                                        <  1:1780527/92‑1 (MQ=255)

                                  ggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGt                                                       <  2:622200/93‑1 (MQ=255)

                                   gcgcTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTc                                                      >  2:600929/1‑93 (MQ=255)

                                       tGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAata                                                  <  1:5158294/93‑1 (MQ=255)

                                        gTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAatat                                                 <  2:136335/93‑1 (MQ=255)

                                        gTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAatat                                                 >  2:4748156/1‑93 (MQ=255)

                                        gTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAatat                                                 >  1:5886802/1‑93 (MQ=255)

                                         ttGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATg                                                >  1:4327937/1‑93 (MQ=255)

                                           ggggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGAt                                              <  1:4107895/93‑1 (MQ=255)

                                            gggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATc                                             <  2:217787/93‑1 (MQ=255)

                                            gggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATc                                             <  2:298483/93‑1 (MQ=255)

                                            gggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATc                                             <  1:2273255/93‑1 (MQ=255)

                                             ggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCg                                            <  1:2931310/93‑1 (MQ=255)

                                              gACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGt                                           <  1:5914239/93‑1 (MQ=255)

                                              gACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGCAAAGAACTGGTCAATATGATCGt                                           <  1:1451700/93‑1 (MQ=255)

                                                    cgggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCa                                     <  2:2030693/93‑1 (MQ=255)

                                                     gggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAg                                    >  2:2306115/1‑93 (MQ=255)

                                                     gggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAg                                    >  1:5004666/1‑93 (MQ=255)

                                                     gggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAg                                    <  2:147820/93‑1 (MQ=255)

                                                     gggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAg                                    >  2:4107977/1‑93 (MQ=255)

                                                        acgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGt                                 >  1:5755659/1‑93 (MQ=255)

                                                         cgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTa                                >  1:4812509/1‑93 (MQ=255)

                                                          gggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTaa                               >  1:2334273/1‑93 (MQ=255)

                                                          gggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTaa                               <  2:1184961/93‑1 (MQ=255)

                                                           ggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGGGCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAAc                              >  1:4230625/1‑93 (MQ=255)

                                                            gaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACt                             <  2:2552287/93‑1 (MQ=255)

                                                             aaaCTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTa                            <  1:4994406/93‑1 (MQ=255)

                                                              aaCTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTAt                           <  2:6099242/93‑1 (MQ=255)

                                                              aaCTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTAt                           >  2:137118/1‑93 (MQ=255)

                                                                cTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCa                         <  1:5346561/93‑1 (MQ=255)

                                                                cTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCa                         <  1:5483383/93‑1 (MQ=255)

                                                                cTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACCGGTCAATATGATCGTTGCCCAGCGTAACTATCa                         <  1:2287826/93‑1 (MQ=255)

                                                                 tttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAg                        <  2:5252852/93‑1 (MQ=255)

                                                                 tttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAg                        >  2:4544823/1‑93 (MQ=255)

                                                                  ttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGt                       >  2:3721401/1‑93 (MQ=255)

                                                                   tGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTc                      <  2:5111718/93‑1 (MQ=255)

                                                                      cccccTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTaa                   <  2:3888301/91‑1 (MQ=255)

                                                                      cACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTaa                   <  1:6080330/93‑1 (MQ=255)

                                                                           tGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGccc              <  1:1564580/93‑1 (MQ=255)

                                                                            gACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCa             <  2:445604/93‑1 (MQ=255)

                                                                              ccAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGa           <  2:1634026/93‑1 (MQ=255)

                                                                               cAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGGAACTATCAGTCTAACGCCCATAc          >  1:5165745/1‑93 (MQ=255)

                                                                                aaCGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGAcc         >  1:1357670/1‑93 (MQ=255)

                                                                                 aCGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCa        <  2:5718200/93‑1 (MQ=255)

                                                                                 aCGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAAAGCCCAGACCa        >  1:4686107/1‑93 (MQ=255)

                                                                                       cgcCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCaaaa  <  2:5441998/93‑1 (MQ=255)

ACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAA  >  NC_000913/1132785‑1132964

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`