BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,191,616	C→T	G80D (GGC→GAC)	ycfC ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,191,616	0	C	T	99.4%	604.8 / NA	167	G80D (GGC→GAC)	ycfC	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (93/73); total (93/74)
Fisher's exact test for biased strand distribution p-value = 4.43e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 177 total aligned reads displayed.

CCCAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGTC  >  NC_000913/1191526‑1191705

gccAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGtcc                                                                                          <  1:1031629/92‑1 (MQ=255)

cccAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGtcc                                                                                          >  1:6205022/1‑93 (MQ=255)

cccAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGtcc                                                                                          <  1:4982514/93‑1 (MQ=255)

cccAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGtcc                                                                                          <  1:4730924/93‑1 (MQ=255)

 ccAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCt                                                                                         >  1:3116544/1‑93 (MQ=255)

   agagTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTgg                                                                                       <  1:1600484/93‑1 (MQ=255)

    gagTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGc                                                                                      <  2:2110346/93‑1 (MQ=255)

    gagTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGc                                                                                      <  2:1487182/93‑1 (MQ=255)

      gtgtCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGa                                                                                    <  2:6266893/93‑1 (MQ=255)

         tCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGActg                                                                                 >  1:4699302/1‑93 (MQ=255)

         tCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGActg                                                                                 <  2:3940164/93‑1 (MQ=255)

         tCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGActg                                                                                 <  1:3523500/93‑1 (MQ=255)

         tCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGActg                                                                                 <  2:424838/93‑1 (MQ=255)

          cGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGActgc                                                                                >  1:371613/1‑93 (MQ=255)

            aGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGActgctg                                                                              <  2:2349840/93‑1 (MQ=255)

            aGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGActgctg                                                                              >  1:5390244/1‑93 (MQ=255)

               gcgcCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCa                                                                           <  1:1174537/93‑1 (MQ=255)

               gcgcCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCa                                                                           <  2:481234/93‑1 (MQ=255)

                cgcCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCAt                                                                          >  2:6029501/1‑93 (MQ=255)

                 gcCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCAtt                                                                         >  1:3189508/1‑93 (MQ=255)

                 gcCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCAtt                                                                         <  2:37147/93‑1 (MQ=255)

                 gcCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCAtt                                                                         >  1:2232282/1‑93 (MQ=255)

                  ccTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTg                                                                        >  2:4466008/1‑93 (MQ=255)

                   cTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGa                                                                       >  2:4502902/1‑93 (MQ=255)

                   cTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGa                                                                       <  2:36449/93‑1 (MQ=255)

                    tttCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAg                                                                      >  2:4006576/1‑93 (MQ=255)

                     ttCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGc                                                                     <  1:1307691/93‑1 (MQ=255)

                      tCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCa                                                                    <  2:461483/93‑1 (MQ=255)

                        gCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACg                                                                  >  2:3861085/1‑93 (MQ=255)

                          tGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGcc                                                                >  2:3233448/1‑93 (MQ=255)

                           gaggagAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCg                                                               >  1:585727/1‑93 (MQ=255)

                            aggagAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGa                                                              >  1:2844630/1‑93 (MQ=255)

                             ggagAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAg                                                             <  1:853132/93‑1 (MQ=255)

                             ggagAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAg                                                             >  1:4343915/1‑93 (MQ=255)

                             agagaGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAg                                                             <  2:3358848/92‑1 (MQ=255)

                               agagTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCa                                                           >  1:4927894/1‑93 (MQ=255)

                                gagTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAg                                                          <  1:4027919/93‑1 (MQ=255)

                                gagTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAg                                                          <  1:3618332/93‑1 (MQ=255)

                                   tttGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGt                                                       >  1:2603887/1‑93 (MQ=255)

                                   tttGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGt                                                       <  2:3770371/93‑1 (MQ=255)

                                   tttGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGt                                                       >  1:5702742/1‑93 (MQ=255)

                                      gcgcTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTc                                                    <  2:3399588/93‑1 (MQ=255)

                                      gcgcTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTc                                                    >  1:3241224/1‑93 (MQ=255)

                                        gcTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCa                                                  <  1:1983046/93‑1 (MQ=255)

                                         cTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAg                                                 <  1:4649362/93‑1 (MQ=255)

                                          tCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGc                                                <  1:3897551/93‑1 (MQ=255)

                                           cAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGcc                                               <  2:5663095/93‑1 (MQ=255)

                                           cAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGcc                                               >  1:636172/1‑93 (MQ=255)

                                           cAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCAACCAGAGCAGGGTTTCCAGcc                                               >  2:4700827/1‑93 (MQ=255)

                                            aaGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGccc                                              >  2:3058877/1‑93 (MQ=255)

                                               cACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAc                                           >  1:1508612/1‑93 (MQ=255)

                                                aCCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAcg                                          >  1:3357590/1‑93 (MQ=255)

                                                aCCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAcg                                          >  1:4547039/1‑93 (MQ=255)

                                                 ccATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAcgc                                         <  2:100971/93‑1 (MQ=255)

                                                 ccATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAcgc                                         >  2:3103652/1‑93 (MQ=255)

                                                 ccATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAcgc                                         <  1:3960470/93‑1 (MQ=255)

                                                 ccATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAcgc                                         >  1:1850909/1‑93 (MQ=255)

                                                 ccATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAcgc                                         >  2:5894396/1‑93 (MQ=255)

                                                  cATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAcgcg                                        >  2:5808975/1‑93 (MQ=255)

                                                   aTCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACgcgc                                       <  2:5745517/93‑1 (MQ=255)

                                                    tCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCa                                      >  2:3384027/1‑93 (MQ=255)

                                                    tCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCa                                      >  2:2938324/1‑93 (MQ=255)

                                                     cAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGGCCGACGCGCAg                                     >  1:6166535/1‑93 (MQ=255)

                                                      aaGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAgg                                    >  1:5485776/1‑93 (MQ=255)

                                                        gCTGAGTGTGTAGCGGGTTAATTCGGGGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGtt                                  <  2:5262021/93‑1 (MQ=255)

                                                        gCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGtt                                  >  1:5572792/1‑93 (MQ=255)

                                                        gCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGtt                                  <  2:2008250/93‑1 (MQ=255)

                                                        gCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGtt                                  >  1:1773737/1‑93 (MQ=255)

                                                        gCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGtt                                  >  1:4032980/1‑93 (MQ=255)

                                                          tGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTgg                                <  2:2219253/93‑1 (MQ=255)

                                                          tGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGCTgg                                >  1:3794434/1‑93 (MQ=255)

                                                             gtgtgtAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCtt                             >  1:3168695/1‑93 (MQ=255)

                                                             gtgtgtAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCtt                             >  2:3973635/1‑93 (MQ=255)

                                                             gtgtgtAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCtt                             >  1:4871107/1‑93 (MQ=255)

                                                              tgtgtAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTc                            <  1:3488917/93‑1 (MQ=255)

                                                              tgtgtAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTc                            <  1:4499731/93‑1 (MQ=255)

                                                                   aGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTAAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTAc                       <  2:4667393/93‑1 (MQ=255)

                                                                    gCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTAcc                      <  1:724168/93‑1 (MQ=255)

                                                                     cGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCg                     <  1:1967523/93‑1 (MQ=255)

                                                                      gggTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGc                    >  1:2699239/1‑93 (MQ=255)

                                                                        gTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑a                 >  1:2499668/1‑93 (MQ=255)

                                                                          tAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑aaa               >  1:5157050/1‑93 (MQ=255)

                                                                           aaTTCGGCGTTTAAGTCCTGGCGACTGCTGTCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑aaaa              <  1:1028897/93‑1 (MQ=255)

                                                                           aaTTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑aaaa              >  1:5423943/1‑93 (MQ=255)

                                                                           aaTTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑aaaa              >  1:4052236/1‑93 (MQ=255)

                                                                           aaTTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑aaaa              >  1:3005574/1‑93 (MQ=255)

                                                                           aaTTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑aaaa              >  1:2817987/1‑93 (MQ=255)

                                                                             ttCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAAc            <  2:5281459/93‑1 (MQ=255)

                                                                                ggCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGc         >  2:874020/1‑93 (MQ=255)

                                                                                ggCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGc         <  2:5790430/93‑1 (MQ=255)

                                                                                ggCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGc         <  2:1400459/93‑1 (MQ=255)

                                                                                ggCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGc         <  1:3473645/93‑1 (MQ=255)

                                                                                 gCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGcc        >  2:421154/1‑93 (MQ=255)

                                                                                 gCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGcc        >  1:5797323/1‑93 (MQ=255)

                                                                                  cGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCa       <  1:2703594/93‑1 (MQ=255)

                                                                                    tttAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGc     >  1:2853410/1‑93 (MQ=255)

                                                                                    tttAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGc     <  2:3324628/93‑1 (MQ=255)

                                                                                      tAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAAACCGCCAGCg    >  1:2960929/1‑93 (MQ=255)

                                                                                      tAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGt   >  1:2738506/1‑93 (MQ=255)

                                                                                      tAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGt   >  2:1709983/1‑93 (MQ=255)

CCCAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGTC  >  NC_000913/1191526‑1191705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`