BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,233,687	A→G	V85A (GTC→GCC)	nhaB ←	Na+/H+ antiporter, pH independent

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,233,687	0	A	G	100.0%	633.0 / NA	198	V85A (GTC→GCC)	nhaB	Na+/H+ antiporter, pH independent
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (115/83); total (115/83)

Only 100 of 206 total aligned reads displayed.

AACAGCAACAGCTGTTTCATAAAATAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGACGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCC  >  NC_000913/1233597‑1233776

   agcaacagcTGTTTCATAAAATAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCgtgt                                                                                      <  1:5621548/93‑1 (MQ=255)

   agcaacagcTGTTTCATAAAATAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCgtgt                                                                                      <  2:1349658/93‑1 (MQ=255)

   agcaacagcTGTTTCATAAAATAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCgtgt                                                                                      <  2:1545774/93‑1 (MQ=255)

     caacagcTGTTTCATAAAATAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTc                                                                                    <  1:1091823/93‑1 (MQ=255)

     caacagcTGTTTCATAAAATAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTc                                                                                    <  1:5320609/93‑1 (MQ=255)

     caacagcTGTTTCATAAAATAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTc                                                                                    <  2:3570288/93‑1 (MQ=255)

       acagcTGTTGCATAAAATAGATCCCCGCAACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCcg                                                                                  <  1:33052/93‑1 (MQ=255)

        cagcTGTTTCATAAAATAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCcgc                                                                                 >  2:5638545/1‑93 (MQ=255)

         agcTGTTTCATAAAATAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCcgcg                                                                                >  1:4846122/1‑93 (MQ=255)

         agcTGTTTCATAAAATAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCcgcg                                                                                >  2:4065791/1‑93 (MQ=255)

          gcTGTTTCATAAAATAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCgcgc                                                                               >  2:4899549/1‑93 (MQ=255)

           cTGTTTCATAAAATAGATACCCGACACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCt                                                                              >  2:2427316/1‑93 (MQ=255)

             gTTTCATAAAATAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTgg                                                                            <  2:665719/93‑1 (MQ=255)

              tttCATAAAATAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGt                                                                           >  1:2568530/1‑93 (MQ=255)

                 cATAAAATAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCAt                                                                        >  1:4673982/1‑93 (MQ=255)

                  aTAAAATAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATg                                                                       >  1:185059/1‑93 (MQ=255)

                     aaaTAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCg                                                                    >  2:3358396/1‑93 (MQ=255)

                     aaaTAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCg                                                                    >  1:1772540/1‑93 (MQ=255)

                       aTAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGAt                                                                  >  1:3689903/1‑93 (MQ=255)

                        tAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATg                                                                 <  1:2790823/93‑1 (MQ=255)

                        tAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATg                                                                 >  1:3276060/1‑93 (MQ=255)

                        tAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATg                                                                 >  1:1215944/1‑93 (MQ=255)

                         aGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGa                                                                <  1:1046083/93‑1 (MQ=255)

                          gATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGaa                                                               >  2:911825/1‑93 (MQ=255)

                          gATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGaa                                                               >  1:3101626/1‑93 (MQ=255)

                           aTACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAAt                                                              >  2:1770410/1‑93 (MQ=255)

                            tACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATa                                                             >  2:3815041/1‑93 (MQ=255)

                             aCCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGACTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATAc                                                            <  1:4590496/93‑1 (MQ=255)

                              cccGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATAcc                                                           <  2:244107/93‑1 (MQ=255)

                                cGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGc                                                         <  2:5022812/93‑1 (MQ=255)

                                cGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGc                                                         >  1:1692034/1‑93 (MQ=255)

                                  ccaccaTAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCtt                                                       >  1:3999224/1‑93 (MQ=255)

                                    accaTAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCg                                                     <  2:4956214/93‑1 (MQ=255)

                                     ccaTAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGa                                                    >  1:671608/1‑93 (MQ=255)

                                      caTAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGAt                                                   <  2:1912270/93‑1 (MQ=255)

                                       aTAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATa                                                  <  1:3626482/93‑1 (MQ=255)

                                       aTAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATa                                                  <  2:4514144/93‑1 (MQ=255)

                                        tAAACATCAGTAACAGCAAGACTTCAAGATTTGTCGCCAACTCTTCATGGGCGTGTTCCGAGCTGGTCATGCCGATGAATACCGCTTCGATAg                                                 >  2:5535265/1‑93 (MQ=255)

                                        tAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAg                                                 >  2:2409064/1‑93 (MQ=255)

                                         aaaCATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGc                                                >  1:897804/1‑93 (MQ=255)

                                          aaCATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGcc                                               >  1:3204/1‑93 (MQ=255)

                                           aCATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCa                                              <  2:5303855/93‑1 (MQ=255)

                                            cATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCaa                                             >  2:5401679/1‑93 (MQ=255)

                                            cATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCaa                                             >  1:1461405/1‑93 (MQ=255)

                                             aTCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAAc                                            <  2:4074491/93‑1 (MQ=255)

                                             aTCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAAc                                            >  2:5255825/1‑93 (MQ=255)

                                             aTCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAAc                                            >  2:6222043/1‑93 (MQ=255)

                                              tCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACa                                           >  1:2005457/1‑93 (MQ=255)

                                              tCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACa                                           <  2:3946194/93‑1 (MQ=255)

                                               cAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAg                                          >  2:4002963/1‑93 (MQ=255)

                                                 gTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGac                                        >  1:522543/1‑93 (MQ=255)

                                                   aaCAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGacca                                      >  1:5682946/1‑93 (MQ=255)

                                                    aCAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGaccac                                     <  2:4674841/93‑1 (MQ=255)

                                                    aCAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGaccac                                     >  1:535363/1‑93 (MQ=255)

                                                    aCAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGaccac                                     >  2:4267818/1‑93 (MQ=255)

                                                    aCAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGaccac                                     <  2:1198918/93‑1 (MQ=255)

                                                     cAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGaccacc                                    <  2:5797456/93‑1 (MQ=255)

                                                      aGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCg                                   <  1:4853268/93‑1 (MQ=255)

                                                      aGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCg                                   <  1:2229468/93‑1 (MQ=255)

                                                       gCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCgg                                  >  1:311024/1‑93 (MQ=255)

                                                       gCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCgg                                  >  1:326478/1‑93 (MQ=255)

                                                        cAAGCCTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACAGCTTCGATAGCCAACAGACCACCggg                                 >  2:4148484/1‑93 (MQ=255)

                                                        cAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCggg                                 >  1:5101431/1‑93 (MQ=255)

                                                        cAAGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCggg                                 <  2:1288114/93‑1 (MQ=255)

                                                         aaGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCgggg                                >  1:4364822/1‑93 (MQ=255)

                                                         aaGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCgggg                                >  1:5175681/1‑93 (MQ=255)

                                                          aGATTTCAAGATTTGCGGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGa                               <  1:5784166/93‑1 (MQ=255)

                                                          aGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGa                               <  2:1084390/93‑1 (MQ=255)

                                                          aGACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGa                               <  1:1303326/93‑1 (MQ=255)

                                                          aGACTTCAAGAGTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGa                               <  2:6082503/93‑1 (MQ=255)

                                                           gACTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGag                              <  2:3284425/93‑1 (MQ=255)

                                                            aCTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGagc                             <  1:655411/93‑1 (MQ=255)

                                                             cTTCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGagca                            >  2:3127304/1‑93 (MQ=255)

                                                               tCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGagcagc                          >  2:4309743/1‑93 (MQ=255)

                                                               tCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGagcagc                          <  1:2357358/93‑1 (MQ=255)

                                                               tCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGagcagc                          >  1:1251810/1‑93 (MQ=255)

                                                               tCAAGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGagcagc                          >  2:2673489/1‑93 (MQ=255)

                                                                cAAGATTTACCGCCACCTCTTCACGGGCGCTGTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCg                         <  2:2992013/93‑1 (MQ=255)

                                                                 aaGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCgg                        <  2:3891065/93‑1 (MQ=255)

                                                                 aaGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCgg                        >  1:3541387/1‑93 (MQ=255)

                                                                 aaGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCgg                        <  2:5138729/93‑1 (MQ=255)

                                                                  aGATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCggg                       <  1:2447800/93‑1 (MQ=255)

                                                                   gATTTGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGt                      <  2:5434993/93‑1 (MQ=255)

                                                                    aTTTGCCGCCCCCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTa                     <  1:4305263/93‑1 (MQ=255)

                                                                     tttGCCGCCACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGGAg                    >  1:3407087/1‑93 (MQ=255)

                                                                        gccgccACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCAt                 >  2:3776743/1‑93 (MQ=255)

                                                                         ccgccACCTCTTCACGGGCGTGTACCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCAtt                <  1:777907/93‑1 (MQ=255)

                                                                          cgccACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCAttt               >  2:5491301/1‑93 (MQ=255)

                                                                           gccACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTc              <  1:1585953/93‑1 (MQ=255)

                                                                           gccACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTc              >  1:4492632/1‑93 (MQ=255)

                                                                           gccACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGGAGCATTTc              >  1:5398878/1‑93 (MQ=255)

                                                                            ccACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCa             >  1:140518/1‑93 (MQ=255)

                                                                             cACCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCAg            >  2:2068123/1‑93 (MQ=255)

                                                                              cccTCTTCGCGGGCGTGTTCCGCGCTGTTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCAgg           <  1:3436702/92‑1 (MQ=255)

                                                                              aCCTCTTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCAgg           >  1:4140812/1‑93 (MQ=255)

                                                                                 tctTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGcc        >  1:3486881/1‑93 (MQ=255)

                                                                                  ctTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCCa       >  1:5986919/1‑93 (MQ=255)

                                                                                  ctTCACGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCCa       <  1:5850763/93‑1 (MQ=255)

                                                                                       cGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGcc  <  2:2141562/93‑1 (MQ=255)

                                                                                       cGGGCGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGGAGCATTTCAGGGCCATCGcc  >  1:4205507/1‑93 (MQ=255)

AACAGCAACAGCTGTTTCATAAAATAGATACCCGCCACCATAAACATCAGTAACAGCAAGACTTCAAGATTTGCCGCCACCTCTTCACGGACGTGTTCCGCGCTGGTCATGCCGATGAATACCGCTTCGATAGCCAACAGACCACCGGGGAGCAGCGGGTAGCATTTCAGGGCCATCGCC  >  NC_000913/1233597‑1233776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`