BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,233,892	A→G	S17P (TCC→CCC)	nhaB ←	Na+/H+ antiporter, pH independent

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,233,892	0	A	G	100.0%	571.9 / NA	186	S17P (TCC→CCC)	nhaB	Na+/H+ antiporter, pH independent
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (93/93); total (93/93)

Only 100 of 201 total aligned reads displayed.

GCAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTTTTTA  >  NC_000913/1233802‑1233981

gCAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCt                                                                                         <  2:320822/93‑1 (MQ=255)

gCAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCt                                                                                         >  1:4226821/1‑93 (MQ=255)

 cAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTg                                                                                        >  1:1165673/1‑93 (MQ=255)

 cAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTg                                                                                        <  2:4205507/93‑1 (MQ=255)

  aaCCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTgg                                                                                       >  2:6065977/1‑93 (MQ=255)

   aCCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGc                                                                                      >  1:1109284/1‑93 (MQ=255)

   aCCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGc                                                                                      >  2:4958345/1‑93 (MQ=255)

   aCCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGc                                                                                      >  1:912763/1‑93 (MQ=255)

    ccAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGcc                                                                                     >  2:3036768/1‑93 (MQ=255)

    ccAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGGTTGTACCAGTCGGGGGGCTGGcc                                                                                     >  2:3962532/1‑93 (MQ=255)

        cccGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCaaa                                                                                 >  2:5153797/1‑93 (MQ=255)

         ccGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCaaaa                                                                                >  2:2653710/1‑93 (MQ=255)

             gacgaAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAAtt                                                                            <  1:6222043/93‑1 (MQ=255)

             gacgaAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAAtt                                                                            <  1:6287234/93‑1 (MQ=255)

             gacgaAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAAtt                                                                            >  1:3280627/1‑93 (MQ=255)

               cgaAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTgc                                                                          <  2:1999878/93‑1 (MQ=255)

               cgaAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTgc                                                                          >  1:3316570/1‑93 (MQ=255)

                gaAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTgcg                                                                         >  2:655949/1‑93 (MQ=255)

                 aaaGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTgcgc                                                                        <  1:5471150/93‑1 (MQ=255)

                 aaaGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTgcgc                                                                        >  2:3774200/1‑93 (MQ=255)

                 aaaGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTgcgc                                                                        <  1:4671154/93‑1 (MQ=255)

                  aaGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGcc                                                                       <  2:1162761/93‑1 (MQ=255)

                   aGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCa                                                                      >  2:5497300/1‑93 (MQ=255)

                    gggCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCAt                                                                     >  2:756683/1‑93 (MQ=255)

                     ggCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATa                                                                    <  2:4046839/93‑1 (MQ=255)

                     ggCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATa                                                                    <  1:2409064/93‑1 (MQ=255)

                      gCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAg                                                                   <  1:3127304/93‑1 (MQ=255)

                       cTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAgc                                                                  <  2:2491864/93‑1 (MQ=255)

                       cTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAgc                                                                  <  2:3292314/93‑1 (MQ=255)

                        tgatgaGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAgcg                                                                 >  1:549880/1‑93 (MQ=255)

                         gatgaGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAgcgc                                                                >  2:4751789/1‑93 (MQ=255)

                         gatgaGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAgcgc                                                                >  2:5633602/1‑93 (MQ=255)

                         gatgaGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAgcgc                                                                >  1:1843240/1‑93 (MQ=255)

                         gatgaGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAgcgc                                                                >  1:471271/1‑93 (MQ=255)

                          atgaGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAgcgcg                                                               <  2:5270456/93‑1 (MQ=255)

                            gaGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGcgcgcg                                                             >  1:1018312/1‑93 (MQ=255)

                            gaGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGcgcgcg                                                             >  1:2174361/1‑93 (MQ=255)

                             aGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCgg                                                            >  2:4508387/1‑93 (MQ=255)

                              ggAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGc                                                           <  1:2853471/93‑1 (MQ=255)

                                aaaaTTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGccc                                                         >  2:3575834/1‑93 (MQ=255)

                                aaaaTTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGccc                                                         >  2:5699388/1‑93 (MQ=255)

                                  aaTTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCa                                                       <  2:1006846/93‑1 (MQ=255)

                                   aTTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAg                                                      <  1:5491301/93‑1 (MQ=255)

                                   aTTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAg                                                      >  2:1607699/1‑93 (MQ=255)

                                    ttAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAgg                                                     >  1:5661711/1‑93 (MQ=255)

                                    ttAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAgg                                                     <  1:3588393/93‑1 (MQ=255)

                                    ttAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAgg                                                     <  1:537879/93‑1 (MQ=255)

                                     tAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGga                                                    >  1:2693634/1‑93 (MQ=255)

                                      aaCGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGgag                                                   >  1:3522787/1‑93 (MQ=255)

                                       aCGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGgaga                                                  <  2:1072319/93‑1 (MQ=255)

                                         ggttttACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGAtc                                                <  2:3459020/90‑1 (MQ=255)

                                         gggTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGAtc                                                >  1:3487961/1‑93 (MQ=255)

                                          ggTATACGAGTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGAtct                                               <  1:2760915/93‑1 (MQ=255)

                                           gTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGAtctc                                              >  1:158498/1‑93 (MQ=255)

                                             ttACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCa                                            <  2:893973/93‑1 (MQ=255)

                                                cGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCatga                                         >  1:1499689/1‑93 (MQ=255)

                                                cGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCatga                                         >  2:5603708/1‑93 (MQ=255)

                                                 gATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCatgat                                        <  1:1671903/93‑1 (MQ=255)

                                                 gATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCatgat                                        <  2:4784407/93‑1 (MQ=255)

                                                  aTTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGTCCCAGGAGATCTCCatgatg                                       >  2:6297920/1‑93 (MQ=255)

                                                  aTTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCatgatg                                       <  1:578110/93‑1 (MQ=255)

                                                    tAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGt                                     >  2:1717949/1‑93 (MQ=255)

                                                    tAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGt                                     <  1:3815041/93‑1 (MQ=255)

                                                    tAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGt                                     <  2:285258/93‑1 (MQ=255)

                                                    aaaGAAATTGATGAGGGCGAGTTTTTACCAGTCGGGGGACTGGCCAAAAAAATTGCGCCAGAGCGCGCGGCCCCAGGAGATCTCCATGATGGt                                     <  2:45502/92‑1 (MQ=255)

                                                     aaGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGtt                                    <  2:431919/93‑1 (MQ=255)

                                                     aaGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGtt                                    >  2:1898831/1‑93 (MQ=255)

                                                        aaaaTGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTcc                                 <  1:5821262/93‑1 (MQ=255)

                                                          aaTGATGAGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCcct                               <  1:4002963/93‑1 (MQ=255)

                                                            tgatgaGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCcctta                             <  1:4267818/93‑1 (MQ=255)

                                                             gatgaGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCccttac                            <  2:2034485/93‑1 (MQ=255)

                                                             gatgaGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCccttac                            >  2:4004520/1‑93 (MQ=255)

                                                              atgaGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCccttacc                           >  2:5836227/1‑93 (MQ=255)

                                                               tgaGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCccttacct                          >  1:4966219/1‑93 (MQ=255)

                                                                gaGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCccttacctt                         <  1:3358396/93‑1 (MQ=255)

                                                                gaGGGCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCccttacctt                         >  2:2428216/1‑93 (MQ=255)

                                                                  gggCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATTGTTTCCcttaccttac                       >  1:1156515/1‑93 (MQ=255)

                                                                  gggCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCcttaccttac                       <  1:5255825/93‑1 (MQ=255)

                                                                    gCGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACaa                     >  1:5584544/1‑93 (MQ=255)

                                                                     cGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACaaa                    <  2:5087989/93‑1 (MQ=255)

                                                                     cGAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACaaa                    <  1:5424662/93‑1 (MQ=255)

                                                                      gAGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAaat                   <  2:447227/93‑1 (MQ=255)

                                                                       aGTTTGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAaata                  <  2:5986919/93‑1 (MQ=255)

                                                                         tttGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAaataat                >  1:5037061/1‑93 (MQ=255)

                                                                           tGTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCa              <  1:4384044/93‑1 (MQ=255)

                                                                            gTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCaa             <  1:2733735/93‑1 (MQ=255)

                                                                            gTACCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCaa             >  2:2297689/1‑93 (MQ=255)

                                                                              aCCAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAatg           <  1:3677959/93‑1 (MQ=255)

                                                                               ccAGTCGGTGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAatga          <  2:2531994/93‑1 (MQ=255)

                                                                               ccAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAatga          <  1:4162391/93‑1 (MQ=255)

                                                                                cAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAatgat         <  1:2438959/93‑1 (MQ=255)

                                                                                cAGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAatgat         <  1:5624016/93‑1 (MQ=255)

                                                                                 aGTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAatgatg        >  1:3637755/1‑93 (MQ=255)

                                                                                  gTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGt       <  2:140518/93‑1 (MQ=255)

                                                                                  gTCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGt       >  2:1224219/1‑93 (MQ=255)

                                                                                   tCGGGGGGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGtt      <  1:6197152/93‑1 (MQ=255)

                                                                                     ggggggCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGtttt    <  1:1218526/93‑1 (MQ=255)

                                                                                      ggggGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGttttt   >  1:2027247/1‑93 (MQ=255)

                                                                                      ggggGCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGttttt   <  1:104295/93‑1 (MQ=255)

                                                                                       ggggCTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTTTTTa  >  2:6240136/1‑93 (MQ=255)

GCAACCAGCCCGCGACGAAAGGGCTGATGAGGAAAATTAACGGGTTTACGATTAAGAAAATGATGAGGGCGAGTTTGTACCAGTCGGGGGACTGGCCCAAAAAATTGCGCCATAGCGCGCGGCCCCAGGAGATCTCCATGATGGTTTCCCTTACCTTACAAATAATCAATGATGTTTTTA  >  NC_000913/1233802‑1233981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`