BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,237,963	C→T	S390S (TCC→TCT)	dadA →	D‑amino acid dehydrogenase subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,237,963	0	C	T	100.0%	890.0 / NA	239	S390S (TCC→TCT)	dadA	D‑amino acid dehydrogenase subunit
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (118/121); total (118/121)

Only 100 of 246 total aligned reads displayed.

GGCACGCCGGTTGTCGGGCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCCGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACAGCCGTGGATTTAC  >  NC_000913/1237874‑1238052

 gCACGCCGGTTGTCGGGCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTc                                                                                       <  1:170111/93‑1 (MQ=255)

 gCACGCCGGTTGTCGGGCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTc                                                                                       <  1:2922051/93‑1 (MQ=255)

  cACGCCGGTTGTCGGGCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCa                                                                                      <  2:67964/93‑1 (MQ=255)

   aCGCCGGTTGTCGGGCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAg                                                                                     <  2:399159/93‑1 (MQ=255)

      ccGGTTGTCGGGCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAgttg                                                                                  >  1:2057437/1‑93 (MQ=255)

        ggTTGTCGGGCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAgttgtt                                                                                <  2:4833203/93‑1 (MQ=255)

        ggTTGTCGGGCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGGCAgttggt                                                                                >  2:1282658/1‑91 (MQ=255)

         gTTGTCGGGCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTa                                                                               >  1:3699070/1‑93 (MQ=255)

         gTTGTCGGGCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTa                                                                               <  1:3669148/93‑1 (MQ=255)

          ttGTCGGGCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTaa                                                                              <  1:4823609/93‑1 (MQ=255)

            gTCGGGCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGc                                                                            <  1:2777309/93‑1 (MQ=255)

            gTCGGGCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGCTCTGGTCAGTTGTTAAga                                                                            >  2:5415949/1‑92 (MQ=255)

              cGGGCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGa                                                                          >  2:6207983/1‑93 (MQ=255)

               gggCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGAt                                                                         <  2:3879283/93‑1 (MQ=255)

               gggCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGGTAAGCGAt                                                                         >  2:2995380/1‑93 (MQ=255)

                ggCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATc                                                                        >  1:5118956/1‑93 (MQ=255)

                 gCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCt                                                                       <  2:3815567/93‑1 (MQ=255)

                 gCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCt                                                                       <  1:5961864/93‑1 (MQ=255)

                  cGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTg                                                                      <  1:3463069/93‑1 (MQ=255)

                   gTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGc                                                                     <  2:2874874/93‑1 (MQ=255)

                    tACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGct                                                                    <  1:3854550/93‑1 (MQ=255)

                     acacGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGctc                                                                   <  2:5347639/93‑1 (MQ=255)

                      cacGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGctct                                                                  <  2:5519861/93‑1 (MQ=255)

                      cacGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAACGATCTGctct                                                                  <  2:2581409/93‑1 (MQ=255)

                       acGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGTTCTGctctc                                                                 >  1:4256878/1‑93 (MQ=255)

                       acGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGctctc                                                                 >  2:5229579/1‑93 (MQ=255)

                       acGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGctctc                                                                 <  1:453335/93‑1 (MQ=255)

                       acGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGctctc                                                                 <  2:3753294/93‑1 (MQ=255)

                         gCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGGCGATGGCTTGCGGGTCTGGTCAGTTGTTAAGCGATCTGGTCTCTg                                                               >  2:1154459/1‑93 (MQ=255)

                         gCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTg                                                               >  1:3161679/1‑93 (MQ=255)

                         gCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTg                                                               <  1:2661884/93‑1 (MQ=255)

                         gCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGGTCTGGTCAGTTGGTAAGCGATCTGCTCTCTg                                                               >  1:2828848/1‑93 (MQ=255)

                           tttAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGt                                                             >  1:5527816/1‑93 (MQ=255)

                             tAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCg                                                           <  2:4394329/93‑1 (MQ=255)

                                   tCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGcc                                                     <  1:2256915/93‑1 (MQ=255)

                                   tCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGcc                                                     >  1:2752514/1‑93 (MQ=255)

                                   tCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGcc                                                     <  2:6191709/93‑1 (MQ=255)

                                   tCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGcc                                                     >  1:3121443/1‑93 (MQ=255)

                                            gAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATccc                                            <  1:2526507/93‑1 (MQ=255)

                                             aaTACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCa                                           <  2:1535226/93‑1 (MQ=255)

                                             aaTACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCa                                           <  1:1430644/93‑1 (MQ=255)

                                             aaTACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCa                                           <  1:1803027/93‑1 (MQ=255)

                                              aTACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCat                                          <  2:4097542/93‑1 (MQ=255)

                                               tACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCata                                         >  2:4142462/1‑93 (MQ=255)

                                                aCCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCatat                                        >  1:3711181/1‑93 (MQ=255)

                                                aCCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCatat                                        <  2:5011032/93‑1 (MQ=255)

                                                aCCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTCGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCatat                                        >  1:3614148/1‑93 (MQ=255)

                                                 ccGGTCACGGCTCGCTAGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATg                                       <  2:1726181/93‑1 (MQ=255)

                                                 ccGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATg                                       >  1:4471338/1‑93 (MQ=255)

                                                 ccGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATg                                       >  1:3746102/1‑93 (MQ=255)

                                                  cGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGa                                      <  2:5621307/93‑1 (MQ=255)

                                                   ggTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAg                                     <  1:5840434/93‑1 (MQ=255)

                                                   ggTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAg                                     >  1:2598408/1‑93 (MQ=255)

                                                   ggTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAg                                     >  1:4969889/1‑93 (MQ=255)

                                                    gTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCCGCGATCCCATATGAgg                                    >  2:3342733/1‑93 (MQ=255)

                                                    gTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAgg                                    <  2:648784/93‑1 (MQ=255)

                                                       aCGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATc                                 >  1:5993321/1‑93 (MQ=255)

                                                        cGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCt                                >  2:4636055/1‑93 (MQ=255)

                                                        cGGCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCt                                <  1:440769/93‑1 (MQ=255)

                                                         ggCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTa                               >  2:1029595/1‑93 (MQ=255)

                                                         ggCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTa                               <  2:5164497/93‑1 (MQ=255)

                                                          gCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTaa                              <  1:5612973/93‑1 (MQ=255)

                                                          gCACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTaa                              <  2:1245867/93‑1 (MQ=255)

                                                           cACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAg                             <  2:2240360/93‑1 (MQ=255)

                                                           cACGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAg                             >  1:3235180/1‑93 (MQ=255)

                                                            aCGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGc                            >  2:3070970/1‑93 (MQ=255)

                                                            aCGCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGc                            <  1:1186094/93‑1 (MQ=255)

                                                              gCTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGt                          <  2:6025093/93‑1 (MQ=255)

                                                               cTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTa                         <  2:3595574/93‑1 (MQ=255)

                                                               cTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTa                         <  2:4278627/93‑1 (MQ=255)

                                                               cTCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTa                         <  1:2144584/93‑1 (MQ=255)

                                                                tCGGCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAg                        >  2:2078846/1‑93 (MQ=255)

                                                                  ggCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAgcg                      >  1:2093730/1‑93 (MQ=255)

                                                                   gCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAgcgc                     <  2:3113126/93‑1 (MQ=255)

                                                                   gCTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAgcgc                     >  2:4312569/1‑93 (MQ=255)

                                                                    cTGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAgcgcg                    <  1:4096880/93‑1 (MQ=255)

                                                                     tgtaCGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAgcgcgc                   <  2:4755345/90‑1 (MQ=255)

                                                                     tGGACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAgcgcgc                   >  1:1592310/1‑93 (MQ=255)

                                                                      ggACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCt                  <  1:1007821/93‑1 (MQ=255)

                                                                      ggACGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCt                  <  1:1213778/93‑1 (MQ=255)

                                                                        aCGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTAc                <  2:1470390/93‑1 (MQ=255)

                                                                         cGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACa               >  2:926762/1‑93 (MQ=255)

                                                                         cGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACa               <  1:73831/93‑1 (MQ=255)

                                                                         cGATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACa               >  1:793640/1‑93 (MQ=255)

                                                                          gATGGCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACAg              >  1:4569932/1‑93 (MQ=255)

                                                                              gCTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACAGCCGt          <  2:2411424/93‑1 (MQ=255)

                                                                               cTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTCAGCGTAGCGCGCTACAGCCGTg         >  2:5768903/1‑93 (MQ=255)

                                                                               cTTGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACAGCCGTg         >  2:804121/1‑93 (MQ=255)

                                                                                ttGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCTCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACAGCCGTgg        >  1:6304813/1‑93 (MQ=255)

                                                                                ttGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACAGCCGTgg        <  2:5324702/93‑1 (MQ=255)

                                                                                 tGCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACAGCCGTGGa       >  2:2484845/1‑93 (MQ=255)

                                                                                  gCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACAGCCGTGGAt      <  1:5790965/93‑1 (MQ=255)

                                                                                  gCGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACAGCCGTGGAt      <  2:5064356/93‑1 (MQ=255)

                                                                                   cGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACAGCCGTGGAtt     >  1:2887094/1‑93 (MQ=255)

                                                                                   cGGTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACAGCCGTGGAtt     <  1:4639173/93‑1 (MQ=255)

                                                                                    ggTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGGCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACAGCCGTGGAttt    >  1:3375342/1‑93 (MQ=255)

                                                                                    ggTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACAGCCGTGGAttt    >  2:2724723/1‑93 (MQ=255)

                                                                                     gTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACAGCCGTGGATTTa   >  2:1231714/1‑93 (MQ=255)

                                                                                     gTTCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACAGCCGTGGATTTa   <  2:1379392/93‑1 (MQ=255)

                                                                                      ttCTGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACAGCCGTGGATTTAc  <  2:1742700/93‑1 (MQ=255)

GGCACGCCGGTTGTCGGGCGTACACGCTTTAAAAATCTGTGGCTGAATACCGGTCACGGCACGCTCGGCTGGACGATGGCTTGCGGTTCCGGTCAGTTGTTAAGCGATCTGCTCTCTGGTCGCACGCCAGCGATCCCATATGAGGATCTAAGCGTAGCGCGCTACAGCCGTGGATTTAC  >  NC_000913/1237874‑1238052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`