BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,376,771	C→T	G288G (GGC→GGT)	ycjT →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,376,771	0	C	T	99.5%	720.6 / ‑5.4	201	G288G (GGC→GGT)	ycjT	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (93/107); total (94/107)
Fisher's exact test for biased strand distribution p-value = 4.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.48e-01

Only 100 of 211 total aligned reads displayed.

GTGCGCGCAGCAGAGTTACGACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGCGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCACGACGAGCGCAGCAGCATTGC  >  NC_000913/1376681‑1376860

gtgCGCGCAGCAGAGTTACGACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAAtggtgg                                                                                         <  1:5438009/93‑1 (MQ=255)

 tgCGCGCAGCAGAGTTACGACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATggtggc                                                                                        <  1:1566146/93‑1 (MQ=255)

   cgcgcAGCAGAGTTACGACCAGCTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGa                                                                                      <  2:1567230/93‑1 (MQ=255)

    gcgcAGCAGAGTTACGACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGaa                                                                                     >  2:2204015/1‑93 (MQ=255)

     cgcAGCAGAGTTACGACCATCTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAg                                                                                    <  1:5361428/93‑1 (MQ=255)

       cagcagAGTTACGACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAgcg                                                                                  <  2:5749374/93‑1 (MQ=255)

        agcagAGTTACGACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAgcgc                                                                                 >  1:5600688/1‑93 (MQ=255)

        agcagAGTTACGACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGCCAGAAACGTCGTATCACGGTAAATGGTGGCGAAgcgc                                                                                 >  2:3928407/1‑93 (MQ=255)

         gcagAGTTACGACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCa                                                                                >  1:2100829/1‑93 (MQ=255)

         gcagAGTTACGACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCa                                                                                >  1:3668571/1‑93 (MQ=255)

          cagAGTTACGACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCAc                                                                               <  2:4437043/93‑1 (MQ=255)

           agagTTACGACCAGCTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACg                                                                              <  2:122599/93‑1 (MQ=255)

            gagTTACGACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGa                                                                             >  2:1897460/1‑93 (MQ=255)

             agTTACGACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGAt                                                                            <  2:4967835/93‑1 (MQ=255)

             agTTACGACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGAt                                                                            <  2:2151757/93‑1 (MQ=255)

              gTTACGACCCACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATc                                                                           <  2:5049093/93‑1 (MQ=255)

              gTTACGACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATc                                                                           <  1:4452691/93‑1 (MQ=255)

                tACGACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAg                                                                         <  2:5415128/93‑1 (MQ=255)

                   gACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCaa                                                                      >  1:946475/1‑93 (MQ=255)

                   gACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCaa                                                                      >  1:1913154/1‑93 (MQ=255)

                    aCCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAg                                                                     >  1:572154/1‑93 (MQ=255)

                    aCCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAg                                                                     >  1:3306982/1‑93 (MQ=255)

                     ccAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCATGATCAGCAAGc                                                                    <  2:4237127/93‑1 (MQ=255)

                     ccAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGc                                                                    <  1:379162/93‑1 (MQ=255)

                     ccAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGc                                                                    <  2:1627316/93‑1 (MQ=255)

                     ccAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGc                                                                    >  2:3756505/1‑93 (MQ=255)

                     ccAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGc                                                                    >  2:4104387/1‑93 (MQ=255)

                      cAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCg                                                                   >  1:3945894/1‑93 (MQ=255)

                      cAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCg                                                                   >  1:327294/1‑93 (MQ=255)

                       aaCTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGt                                                                  >  2:3631471/1‑93 (MQ=255)

                       aaCTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGt                                                                  >  2:3303859/1‑93 (MQ=255)

                       aaCTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGt                                                                  >  2:805051/1‑93 (MQ=255)

                        aCTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGtt                                                                 <  2:395365/93‑1 (MQ=255)

                         cttcttGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTa                                                                <  1:3675950/93‑1 (MQ=255)

                         cttcttGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTa                                                                <  1:3061105/93‑1 (MQ=255)

                           tcttGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGa                                                              <  2:357675/93‑1 (MQ=255)

                           tcttGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGa                                                              <  2:2032887/93‑1 (MQ=255)

                             ttGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGAtt                                                            >  1:4423198/1‑93 (MQ=255)

                             ttGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGAtt                                                            >  2:3356307/1‑93 (MQ=255)

                             ttGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGAtt                                                            >  2:5961248/1‑93 (MQ=255)

                             ttGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGAtt                                                            <  2:4531061/93‑1 (MQ=255)

                             ttGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGAtt                                                            <  2:2308197/93‑1 (MQ=255)

                              tGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTa                                                           <  1:368773/93‑1 (MQ=255)

                              tGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTa                                                           <  2:3908310/93‑1 (MQ=255)

                              tGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTa                                                           <  2:4031393/93‑1 (MQ=255)

                                cagcaTCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATg                                                         <  2:3088947/93‑1 (MQ=255)

                                cagcaTCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATg                                                         >  1:2977535/1‑93 (MQ=255)

                                   gaTCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATgcgc                                                      <  1:5673700/92‑1 (MQ=255)

                                     tCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCtt                                                    >  2:3229963/1‑93 (MQ=255)

                                      cAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCttt                                                   <  2:1281054/93‑1 (MQ=255)

                                       aaCAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTa                                                  <  1:1220387/93‑1 (MQ=255)

                                       aaCAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTa                                                  <  2:6176849/93‑1 (MQ=255)

                                         cAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTatc                                                >  2:4685415/1‑93 (MQ=255)

                                         cAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTatc                                                <  2:4290771/93‑1 (MQ=255)

                                         cAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTatc                                                >  1:5813512/1‑93 (MQ=255)

                                          aGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTatca                                               <  2:1454863/93‑1 (MQ=255)

                                          aGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTatca                                               <  1:2754918/93‑1 (MQ=255)

                                          aGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTatca                                               >  1:3630305/1‑93 (MQ=255)

                                          aGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTatca                                               <  2:3547346/93‑1 (MQ=255)

                                           gAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTatcat                                              >  1:2921307/1‑93 (MQ=255)

                                            aaaaCTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAANCGTTAGATTATGCGCTTTatcatc                                             >  2:650632/1‑93 (MQ=255)

                                            aaaaCTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTatcatc                                             <  2:1129781/93‑1 (MQ=255)

                                              aaCTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTg                                           >  1:6052748/1‑93 (MQ=255)

                                              aaCTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTg                                           >  1:3651099/1‑93 (MQ=255)

                                              aaCTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTg                                           >  2:4866102/1‑93 (MQ=255)

                                              aaCTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTg                                           >  2:2627634/1‑93 (MQ=255)

                                               aCTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTgc                                          >  2:3844973/1‑93 (MQ=255)

                                                cTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGTGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTgcg                                         <  1:5025752/93‑1 (MQ=255)

                                                 tGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTgcgc                                        >  2:5003815/1‑93 (MQ=255)

                                                   gCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGcat                                      <  2:4726456/93‑1 (MQ=255)

                                                     gTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGcatca                                    <  1:4842954/93‑1 (MQ=255)

                                                       cAATGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATg                                  <  2:4812639/93‑1 (MQ=255)

                                                        aaTGGTGGCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCCGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGa                                 <  1:2220387/93‑1 (MQ=255)

                                                             tggCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCt                            <  2:5223384/93‑1 (MQ=255)

                                                               gCAGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGc                          >  2:3018099/1‑93 (MQ=255)

                                                                 aGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGccc                        <  2:1346517/93‑1 (MQ=255)

                                                                 aGAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGccc                        <  1:318001/93‑1 (MQ=255)

                                                                  gAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCa                       <  2:5593263/93‑1 (MQ=255)

                                                                  gAAACGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTGAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCa                       <  1:3374105/93‑1 (MQ=255)

                                                                     aCGTCGTATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCacga                    >  1:2546149/1‑93 (MQ=255)

                                                                      cgtcgtATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCacgac                   <  1:6305578/93‑1 (MQ=255)

                                                                      cgtcgtATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCacgac                   <  1:1947156/93‑1 (MQ=255)

                                                                       gtcgtATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCacgacg                  >  1:3724895/1‑93 (MQ=255)

                                                                       gtcgtATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCacgacg                  >  2:4762496/1‑93 (MQ=255)

                                                                        tcgtATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCAcgacga                 <  1:773054/93‑1 (MQ=255)

                                                                        tcgtATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCAcgacga                 >  2:2534121/1‑93 (MQ=255)

                                                                          gtATCACGGTAAATGGTGGCGCAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCCcgacgacg               >  1:1613098/1‑91 (MQ=255)

                                                                          gtATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCACGACGAgc               <  1:4667943/93‑1 (MQ=255)

                                                                          gtATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCACGACGAgc               >  1:1517277/1‑93 (MQ=255)

                                                                           tATCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCACGACGAgcg              >  1:2875018/1‑93 (MQ=255)

                                                                            aTCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCACGACGAgcgc             >  2:2437543/1‑93 (MQ=255)

                                                                             tCACGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCACGACGAGCgca            <  1:3518267/93‑1 (MQ=255)

                                                                                cGGTAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCACGACGAGCgcagca         >  1:5733309/1‑93 (MQ=255)

                                                                                   tAAATGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCACGACGAGCgcagcagca      <  1:1035676/93‑1 (MQ=255)

                                                                                    aaaTGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCACGACGAGCGCAGCAGCAt     >  1:755037/1‑93 (MQ=255)

                                                                                    aaaTGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCACGACGAGCGCAGCAGCAt     <  1:4291136/93‑1 (MQ=255)

                                                                                    aaaTGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCACGACGAGCGCAGCAGCAt     >  2:1819855/1‑93 (MQ=255)

                                                                                      aTGGTGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCACGACGAGCGCAGCAGCATTg   >  1:5273057/1‑93 (MQ=255)

                                                                                       tggtggCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCACGACGAGCGCAGCAGCATTGc  <  2:5938298/93‑1 (MQ=255)

                                                                                       tggtggCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCACGACGAGCGCAGCAGCATTGc  <  2:1533354/93‑1 (MQ=255)

GTGCGCGCAGCAGAGTTACGACCAACTTCTTGCAGCATCAACAGAAAACTGGCGTCAATGGTGGCAGAAACGTCGTATCACGGTAAATGGCGGCGAAGCGCACGATCAGCAAGCGTTAGATTATGCGCTTTATCATCTGCGCATCATGACGCCTGCCCACGACGAGCGCAGCAGCATTGC  >  NC_000913/1376681‑1376860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`