BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,399,041	T→C	T255A (ACA→GCA)	ydaH ←	putative pump protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,399,041	0	T	C	99.5%	640.0 / NA	197	T255A (ACA→GCA)	ydaH	putative pump protein
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (105/91); minor base G (1/0); total (106/91)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 202 total aligned reads displayed.

GCGGGATCACCATCAGCGCAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGTCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGGCCGCCAACAATCGTCAGTA  >  NC_000913/1398951‑1399130

gCGGGATCACCATCAGCGCAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCt                                                                                         <  2:4887655/93‑1 (MQ=255)

 cGGGATCACCATCAGCGCAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTg                                                                                        <  1:3463491/93‑1 (MQ=255)

   ggATCACCATCAGCGCAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCa                                                                                      >  1:5072074/1‑93 (MQ=255)

   ggATCACCATCAGCGCAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCa                                                                                      <  2:2278535/93‑1 (MQ=255)

        cccATCAGCGCAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTtc                                                                                 <  1:1825833/92‑1 (MQ=255)

        aCCATCAGCGCAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTtc                                                                                 <  2:5058910/93‑1 (MQ=255)

         ccATCAGCGCAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTtct                                                                                <  1:1605965/93‑1 (MQ=255)

            tCAGCGCAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCAt                                                                             >  2:3970431/1‑93 (MQ=255)

            tCAGCGCAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCAt                                                                             >  2:5822836/1‑93 (MQ=255)

            tCAGCGCAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCAt                                                                             <  1:6194411/93‑1 (MQ=255)

            tCAGCGCAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCAt                                                                             <  1:5852516/93‑1 (MQ=255)

            tCAGCGCAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCAt                                                                             >  2:6272888/1‑93 (MQ=255)

             cAGCGCAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATc                                                                            <  1:1753757/93‑1 (MQ=255)

               gcgcAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGc                                                                          <  2:5466185/93‑1 (MQ=255)

               gcgcAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGc                                                                          >  2:5592563/1‑93 (MQ=255)

                cgcAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCt                                                                         >  2:3205804/1‑93 (MQ=255)

                   aaTCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGtt                                                                      >  2:5344509/1‑93 (MQ=255)

                   aaTCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGtt                                                                      >  2:5187856/1‑93 (MQ=255)

                   aaTCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGtt                                                                      >  1:6024815/1‑93 (MQ=255)

                      cGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTcc                                                                   >  1:1084832/1‑93 (MQ=255)

                        cagcaATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCt                                                                 >  2:729917/1‑93 (MQ=255)

                        cagcaATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCt                                                                 <  2:4210670/93‑1 (MQ=255)

                         agcaATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTg                                                                >  2:3492707/1‑93 (MQ=255)

                         agcaATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTg                                                                >  1:1895181/1‑93 (MQ=255)

                          gcaATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGc                                                               <  2:4398058/93‑1 (MQ=255)

                            aaTAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCa                                                             >  1:4718309/1‑93 (MQ=255)

                               agaaaGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTg                                                          >  2:1365466/3‑93 (MQ=255)

                                aaaaGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGa                                                         >  1:249667/1‑93 (MQ=255)

                                 aaaGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGAc                                                        <  1:5672356/93‑1 (MQ=255)

                                   aGTAGCGATACGACACCTGCTATGCGTAACCCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCt                                                      <  2:2352199/93‑1 (MQ=255)

                                     tAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTaa                                                    >  1:808105/1‑93 (MQ=255)

                                        cGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCg                                                 <  1:1393664/93‑1 (MQ=255)

                                         gATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGt                                                <  2:4652844/93‑1 (MQ=255)

                                         gATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGt                                                <  1:4899758/93‑1 (MQ=255)

                                         gATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGt                                                <  1:2556545/93‑1 (MQ=255)

                                         gATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGt                                                >  1:2108333/1‑93 (MQ=255)

                                         gATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGt                                                >  2:1225238/1‑93 (MQ=255)

                                         gATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGt                                                <  1:3886953/93‑1 (MQ=255)

                                         gATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGt                                                <  1:3746054/93‑1 (MQ=255)

                                         gATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGt                                                >  2:5725023/1‑93 (MQ=255)

                                          aTACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTg                                               >  2:2819994/1‑93 (MQ=255)

                                           tACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTgg                                              >  2:6183962/1‑93 (MQ=255)

                                            aCGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGc                                             <  2:3391557/93‑1 (MQ=255)

                                              gACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTc                                           >  2:5295412/1‑93 (MQ=255)

                                              gACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTc                                           <  1:411165/93‑1 (MQ=255)

                                              caccccTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTc                                           <  2:2327817/89‑1 (MQ=255)

                                               acacCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCg                                          >  1:2734824/1‑93 (MQ=255)

                                                cacCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCga                                         <  2:3098092/93‑1 (MQ=255)

                                                 cccTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCgat                                        <  2:428141/92‑1 (MQ=255)

                                                 acCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCgat                                        >  2:2135142/1‑93 (MQ=255)

                                                 acCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCgat                                        <  1:1921586/93‑1 (MQ=255)

                                                  ccTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCgatg                                       <  2:2492173/93‑1 (MQ=255)

                                                  ccTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCgatg                                       >  2:5890053/1‑93 (MQ=255)

                                                   cTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCgatga                                      >  1:3738368/1‑93 (MQ=255)

                                                   cTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCgatga                                      <  1:2251469/93‑1 (MQ=255)

                                                   cTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCgatga                                      >  2:1562413/1‑93 (MQ=255)

                                                   cTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCACCGCTGTTTCCCTGCCATTGACCTAACCGAGGCTCgatga                                      <  2:185114/93‑1 (MQ=255)

                                                     gCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGAtt                                    <  1:1705125/93‑1 (MQ=255)

                                                     gCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGAtt                                    >  2:4764217/1‑93 (MQ=255)

                                                     gCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGAtt                                    >  1:3317722/1‑93 (MQ=255)

                                                       tATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGAtttt                                  >  1:473476/1‑93 (MQ=255)

                                                       tATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGAtttt                                  <  1:5332152/93‑1 (MQ=255)

                                                       tATGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGAtttt                                  <  1:5122932/93‑1 (MQ=255)

                                                         tGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGt                                >  1:4074739/1‑93 (MQ=255)

                                                         tGCGTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGt                                >  1:489106/1‑93 (MQ=255)

                                                            gTAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCgg                             <  2:5086763/93‑1 (MQ=255)

                                                             tAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGt                            >  2:4050812/1‑93 (MQ=255)

                                                             tAAACCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGt                            >  2:1677779/1‑93 (MQ=255)

                                                              aaaCCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGtt                           >  1:103426/1‑93 (MQ=255)

                                                              aaaCCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGtt                           >  1:5420395/1‑93 (MQ=255)

                                                               aaCCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTa                          >  1:1590063/1‑93 (MQ=255)

                                                                aCCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTAt                         >  1:4442737/1‑93 (MQ=255)

                                                                aCCAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTAt                         >  1:4776458/1‑93 (MQ=255)

                                                                 ccAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATc                        <  1:4949666/93‑1 (MQ=255)

                                                                 ccAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATc                        <  1:2579876/93‑1 (MQ=255)

                                                                  cAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCa                       <  1:1291851/93‑1 (MQ=255)

                                                                  cAAAACGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCa                       <  1:3644331/93‑1 (MQ=255)

                                                                    aaaCGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAgg                     >  2:1958198/1‑93 (MQ=255)

                                                                     aaCGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGgc                    <  1:902335/93‑1 (MQ=255)

                                                                     aaCGCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCCATGATTTTGTCGGTTATCAGgc                    >  2:4668232/1‑93 (MQ=255)

                                                                        gCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGgccgc                 >  2:2616510/1‑93 (MQ=255)

                                                                        gCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGgccgc                 <  1:3817345/93‑1 (MQ=255)

                                                                        gCTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGgccgc                 <  2:3588876/93‑1 (MQ=255)

                                                                         cTGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGgccgcc                >  1:5252698/1‑93 (MQ=255)

                                                                          tGACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGGCCGCca               >  1:3425713/1‑93 (MQ=255)

                                                                           gACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGGCCGCcaa              >  2:1491682/1‑93 (MQ=255)

                                                                           gACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGGCCGCcaa              <  1:2329876/93‑1 (MQ=255)

                                                                           gACTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGGCCGCcaa              >  1:3523558/1‑93 (MQ=255)

                                                                             cTTTCGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGGCCGCcaaca            >  2:2872022/1‑93 (MQ=255)

                                                                                 cGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGGCCGCCAACAATCg        >  1:2809527/1‑93 (MQ=255)

                                                                                 cGGTCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGGCCGCCAACAATCg        >  2:2829234/1‑93 (MQ=255)

                                                                                    tCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGGCCGCCAACAATCGTCa     >  1:2038459/1‑93 (MQ=255)

                                                                                    tCAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGGCCGCCAACAATCGTCa     <  2:2166963/93‑1 (MQ=255)

                                                                                     cAATGGCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCTATGATTTTGTCGGTTATCAGGCCGCCAACAATCGTCAg    <  1:3205309/93‑1 (MQ=255)

                                                                                     cAATGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGGCCGCCAACAATCGTCAg    <  2:1882070/93‑1 (MQ=255)

                                                                                      aaTGGCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGGCCGCCAACAATCGGCAgg   >  2:1009749/1‑92 (MQ=255)

                                                                                      aaTGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGGCCGCCAACAATCGTCAGt   <  2:3021885/93‑1 (MQ=255)

                                                                                      aaTGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGGCCGCCAACAATCGTCAGt   >  1:1189180/1‑93 (MQ=255)

                                                                                       aTGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGGCCGCCAACAATCGTCAGTa  <  1:4315750/93‑1 (MQ=255)

                                                                                       aTGCCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGGCCGCCAACAATCGTCAGTa  >  2:5683834/1‑93 (MQ=255)

GCGGGATCACCATCAGCGCAATCGCAGCAATAAAAAGTAGCGATACGACACCTGCTATGCGTAAACCAAAACGCTGACTTTCGGTCAATGTCTGCAGTTTCTCATCGCTGTTTCCCTGCCATTGACCTAACCGTGGCTCGATGATTTTGTCGGTTATCAGGCCGCCAACAATCGTCAGTA  >  NC_000913/1398951‑1399130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`