Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,549,144 T→C G220G (GGT→GGC fdnH → formate dehydrogenase‑N, nitrate‑inducible, iron‑sulfur beta subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,549,1440TC99.5% 575.2 / ‑5.9 182G220G (GGT→GGCfdnHformate dehydrogenase‑N, nitrate‑inducible, iron‑sulfur beta subunit
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (90/91);  total (91/91)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01

Only 100 of 189 total aligned reads displayed.

GGAGATGCTGGAGCTGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGTGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGATCGACACCTCGG  >  NC_000913/1549054‑1549232
                                                                                          |                                                                                        
ggAGATGCTGGAGCTGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTcggcgg                                                                                        >  2:6019690/1‑93 (MQ=255)
ggAGATGCTGGAGCTGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTcggcgg                                                                                        >  1:3317295/1‑93 (MQ=255)
  agaTGCTGGAGCTGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTa                                                                                      <  1:1098088/93‑1 (MQ=255)
  agaTGCTGGAGCTGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTa                                                                                      >  2:4812559/1‑93 (MQ=255)
   gaTGCTGGAGCTGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTAc                                                                                     >  1:4958892/1‑93 (MQ=255)
     tGCTGGAGCTGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGGACGc                                                                                   >  1:101218/1‑93 (MQ=255)
      gCTGGAGCTGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCa                                                                                  <  1:3668879/93‑1 (MQ=255)
       cTGGAGCTGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCAc                                                                                 >  2:2226917/1‑93 (MQ=255)
       cTGGAGCTGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCAc                                                                                 <  2:2131065/93‑1 (MQ=255)
       cTGGAGCTGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCAc                                                                                 >  2:3026230/1‑93 (MQ=255)
         ggAGATGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGt                                                                               >  2:521233/1‑93 (MQ=255)
           aGCTGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTa                                                                             >  2:912238/1‑93 (MQ=255)
           aGCTGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTa                                                                             <  1:1137661/93‑1 (MQ=255)
            gCTGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTAt                                                                            <  2:2423561/93‑1 (MQ=255)
             cTGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATg                                                                           <  2:2452805/93‑1 (MQ=255)
              tGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGt                                                                          <  1:5118277/93‑1 (MQ=255)
                gCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCGCGTTATGTAc                                                                        <  1:3540410/93‑1 (MQ=255)
                gCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTAc                                                                        <  2:3485779/93‑1 (MQ=255)
                   gAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGtg                                                                     >  1:2966317/1‑93 (MQ=255)
                    aaCAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGTGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGtgc                                                                    <  1:5825018/93‑1 (MQ=255)
                      cAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGtgctg                                                                  >  2:1536577/1‑93 (MQ=255)
                        gcgcGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCa                                                                >  1:1070560/1‑93 (MQ=255)
                          gcgTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATc                                                              >  1:5558940/1‑93 (MQ=255)
                           cgTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCa                                                             >  1:1933010/1‑93 (MQ=255)
                            gTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCAc                                                            <  2:25463/93‑1 (MQ=255)
                              ggCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGc                                                          <  1:6239995/93‑1 (MQ=255)
                              ggCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGc                                                          <  2:3757549/93‑1 (MQ=255)
                               gCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGcc                                                         >  2:4193927/1‑93 (MQ=255)
                               gCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGcc                                                         >  2:2868053/1‑93 (MQ=255)
                               gCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGcc                                                         <  2:843236/93‑1 (MQ=255)
                                cGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCg                                                        <  2:4032121/93‑1 (MQ=255)
                                 gAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGa                                                       <  2:1974418/93‑1 (MQ=255)
                                 gAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGa                                                       <  2:832816/93‑1 (MQ=255)
                                 gAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGa                                                       <  2:6174568/93‑1 (MQ=255)
                                  aaaCTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGAt                                                      <  1:5844809/93‑1 (MQ=255)
                                   aaCTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATc                                                     >  1:4589225/1‑93 (MQ=255)
                                    aCTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCa                                                    >  1:4324819/1‑93 (MQ=255)
                                      tGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGc                                                  <  1:6141112/93‑1 (MQ=255)
                                       gAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGcc                                                 >  1:681465/1‑93 (MQ=255)
                                        aaaGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCg                                                >  1:6104473/1‑93 (MQ=255)
                                        aaaGCGCGTGGTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCgg                                               <  1:1457667/93‑1 (MQ=255)
                                         aaGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCgg                                               >  2:4696078/1‑93 (MQ=255)
                                          aGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGa                                              >  2:1641298/1‑93 (MQ=255)
                                           gcgcGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAg                                             <  1:3340833/93‑1 (MQ=255)
                                             gcgTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCt                                           >  1:4009982/1‑93 (MQ=255)
                                              cgTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTg                                          <  1:1375696/93‑1 (MQ=255)
                                               gTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACTTGCTGCATCACGCCGATCAGCCGGAGCTGt                                         >  1:4132991/1‑93 (MQ=255)
                                                tGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTa                                        <  2:1376093/93‑1 (MQ=255)
                                                 ggTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTAt                                       >  1:244907/1‑93 (MQ=255)
                                                  gTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATc                                      >  2:5729426/1‑93 (MQ=255)
                                                   ttACGAACATGCTGGCGTCTACAACCCGGAAGGGGACGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCa                                     >  1:4767797/1‑93 (MQ=255)
                                                    tACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCAc                                    <  1:6169952/93‑1 (MQ=255)
                                                     aCGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACg                                   <  2:5592341/93‑1 (MQ=255)
                                                        aaCATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTc                                >  1:6180066/1‑93 (MQ=255)
                                                        aaCATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTc                                <  2:4067691/93‑1 (MQ=255)
                                                        aaCATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTc                                <  2:694179/93‑1 (MQ=255)
                                                        aaCATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTc                                <  1:1532111/93‑1 (MQ=255)
                                                         aCATGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCt                               <  2:5637849/93‑1 (MQ=255)
                                                           aTGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGc                             >  2:3899540/1‑93 (MQ=255)
                                                            tGCTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGcc                            >  2:4096922/1‑93 (MQ=255)
                                                              cTGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGa                          >  2:3451401/1‑93 (MQ=255)
                                                               tGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGaa                         >  2:2236056/1‑93 (MQ=255)
                                                               tGGCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGaa                         >  1:2696798/1‑93 (MQ=255)
                                                                ggCGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGaaa                        <  2:3629541/93‑1 (MQ=255)
                                                                  cGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGa                      >  2:611849/1‑93 (MQ=255)
                                                                  cGTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGa                      <  2:5882252/93‑1 (MQ=255)
                                                                   gTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGAt                     >  1:1285270/1‑93 (MQ=255)
                                                                   gTCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGAt                     <  2:4411670/93‑1 (MQ=255)
                                                                    tCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATc                    >  2:1081792/1‑93 (MQ=255)
                                                                    tCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATc                    >  2:3183988/1‑93 (MQ=255)
                                                                    tCTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATc                    >  1:2239466/1‑93 (MQ=255)
                                                                     cTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATcc                   <  1:1396744/93‑1 (MQ=255)
                                                                     cTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATcc                   <  2:5860543/93‑1 (MQ=255)
                                                                     cTACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATcc                   <  1:454269/93‑1 (MQ=255)
                                                                      tACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCg                  >  1:5897013/1‑93 (MQ=255)
                                                                      tACAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCg                  <  1:5581995/93‑1 (MQ=255)
                                                                       aCAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGa                 >  1:4055473/1‑93 (MQ=255)
                                                                       aCAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGa                 >  2:1149498/1‑93 (MQ=255)
                                                                        cAACCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGaa                <  1:5046111/93‑1 (MQ=255)
                                                                         aaCCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAg               >  2:4250884/1‑93 (MQ=255)
                                                                          aCCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGa              >  2:960547/1‑93 (MQ=255)
                                                                          aCCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGa              <  2:1675813/93‑1 (MQ=255)
                                                                          aCCCGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATAAAGGTCTGCCGAAAGATCTGAAGa              >  2:4256705/1‑93 (MQ=255)
                                                                           cccGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGAt             <  2:4573899/93‑1 (MQ=255)
                                                                            ccGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGATc            >  2:1917366/1‑93 (MQ=255)
                                                                            ccGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGATc            <  2:5306875/93‑1 (MQ=255)
                                                                             cGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCTGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGATCg           >  1:3690746/1‑93 (MQ=255)
                                                                             cGGAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGATCg           <  2:135568/93‑1 (MQ=255)
                                                                              ggAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGATCGa          >  1:1713161/1‑93 (MQ=255)
                                                                               gAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGATCGac         >  1:4492850/1‑93 (MQ=255)
                                                                               gAAGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGATCGac         <  1:4179195/93‑1 (MQ=255)
                                                                                aaGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGATCGaca        >  1:1520972/1‑93 (MQ=255)
                                                                                 aGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGATCGacac       >  1:5294283/1‑93 (MQ=255)
                                                                                 aGGGGTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGATCGacac       >  1:4317801/1‑93 (MQ=255)
                                                                                   gggTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGATCGACACCt     >  2:3302121/1‑93 (MQ=255)
                                                                                   gggTCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGATCGACACCt     <  1:3025197/93‑1 (MQ=255)
                                                                                   gggTCGGCGCTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGATCGACACCt     <  2:1319459/93‑1 (MQ=255)
                                                                                    ggTCGTCGGTACGCACGTTATGTACGTGCTGCATCGCGCCGATCAGCCGGAGCGGTATCACGGTCTGCCGAAAGATCCGAAGATCGACACCTc    <  1:1445065/93‑1 (MQ=255)
                                                                                      tCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGATCGACACCTCgg  <  1:5598220/93‑1 (MQ=255)
                                                                                      tCGGCGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGATCGACACCTCgg  >  1:5296788/1‑93 (MQ=255)
                                                                                          |                                                                                        
GGAGATGCTGGAGCTGGCGGAACAGCGCGTGGCGAAACTGAAAGCGCGTGGTTACGAACATGCTGGCGTCTACAACCCGGAAGGGGTCGGTGGTACGCACGTTATGTACGTGCTGCATCACGCCGATCAGCCGGAGCTGTATCACGGTCTGCCGAAAGATCCGAAGATCGACACCTCGG  >  NC_000913/1549054‑1549232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: