BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,789,635	T→C	Y137C (TAT→TGT)	b1707 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,789,635	0	T	C	100.0%	673.9 / NA	205	Y137C (TAT→TGT)	b1707	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (90/115); total (90/115)

Only 100 of 212 total aligned reads displayed.

TTTTATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGATACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGA  >  NC_000913/1789546‑1789724

   tATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACtt                                                                                     <  1:6281975/93‑1 (MQ=255)

    aTCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTg                                                                                    >  2:5455387/1‑93 (MQ=255)

      ccAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCg                                                                                  <  1:5812993/93‑1 (MQ=255)

       cAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGa                                                                                 >  1:4018126/1‑93 (MQ=255)

       cAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGa                                                                                 <  2:4931002/93‑1 (MQ=255)

       cAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGa                                                                                 <  1:3890590/93‑1 (MQ=255)

        aGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGAt                                                                                <  1:1564924/93‑1 (MQ=255)

        aGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGAt                                                                                <  2:1478293/93‑1 (MQ=255)

         gCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATa                                                                               >  1:1896073/1‑93 (MQ=255)

           aTGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAg                                                                             >  2:2595914/1‑93 (MQ=255)

            tGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAgg                                                                            >  2:1643712/1‑93 (MQ=255)

            tGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAgg                                                                            <  2:386478/93‑1 (MQ=255)

             gACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGa                                                                           <  2:5885929/93‑1 (MQ=255)

             gACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGa                                                                           <  1:2974835/93‑1 (MQ=255)

             gACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGa                                                                           >  2:5735600/1‑93 (MQ=255)

             gACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGa                                                                           <  1:4644794/93‑1 (MQ=255)

              aCGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGAt                                                                          <  2:1889300/93‑1 (MQ=255)

                gcgGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATaa                                                                        <  1:6183331/93‑1 (MQ=255)

                 cgGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATaaa                                                                       <  2:1103977/93‑1 (MQ=255)

                 cgGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATaaa                                                                       >  2:2843214/1‑93 (MQ=255)

                   ggTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAg                                                                     <  1:3178139/93‑1 (MQ=255)

                   ggTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAg                                                                     >  2:3476980/1‑93 (MQ=255)

                    gTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGa                                                                    >  1:676610/1‑93 (MQ=255)

                     tGAAAAGACCATGAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAAGGGACCAACCTTCCATTAGGATAAAAAAc                                                                   >  2:5043696/1‑93 (MQ=255)

                     tGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGAc                                                                   <  1:3791733/93‑1 (MQ=255)

                     tGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGAc                                                                   >  1:5037872/1‑93 (MQ=255)

                      gAAAAGACCATCAAAACCCGCTTTCATTTTGATATTGCCTGCTCCCAAAATACCTACCCCAAGGCGACACACTTGCGATAAGGATAAAAGAcc                                                                  <  2:5907502/93‑1 (MQ=255)

                      gAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGAcc                                                                  <  1:1820550/93‑1 (MQ=255)

                      gAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGAcc                                                                  >  1:4289086/1‑93 (MQ=255)

                       aaaaGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACcg                                                                 >  1:2363084/1‑93 (MQ=255)

                        aaaGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACcgc                                                                >  2:4639085/1‑93 (MQ=255)

                           gACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGAt                                                             >  1:3317793/1‑93 (MQ=255)

                            aCCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGAtt                                                            <  2:5385106/93‑1 (MQ=255)

                            aCCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGAtt                                                            <  1:3993165/93‑1 (MQ=255)

                            aCCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGAtt                                                            >  2:6171404/1‑93 (MQ=255)

                             ccATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTa                                                           <  2:2152074/93‑1 (MQ=255)

                              cATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTAt                                                          >  1:4593088/1‑93 (MQ=255)

                                tCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCt                                                        <  2:955875/93‑1 (MQ=255)

                                  taaaaCCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTGCCTAACACAAGGGGACTCACTTGCAATAAGGATAAAAGACCGCGATTAGCttt                                                      <  2:6250797/92‑1 (MQ=255)

                                  aaaaaCCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCttt                                                      <  2:2503251/93‑1 (MQ=255)

                                   aaaaCCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCtttt                                                     <  1:5539596/93‑1 (MQ=255)

                                   aaaaCCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCtttt                                                     <  2:72660/93‑1 (MQ=255)

                                   aaaaCCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCtttt                                                     <  1:2473952/93‑1 (MQ=255)

                                     aaCCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTcc                                                   >  2:3357998/1‑93 (MQ=255)

                                      aCCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCt                                                  >  2:3246637/1‑93 (MQ=255)

                                      aCCGCTGTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCt                                                  <  2:5562377/93‑1 (MQ=255)

                                       ccGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCtt                                                 >  2:93729/1‑93 (MQ=255)

                                       ccGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCtt                                                 <  1:1448919/93‑1 (MQ=255)

                                           tttCATTGTGCTATTGTCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCAtt                                             >  2:2207797/1‑93 (MQ=255)

                                           tttCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGCCCGCGATTATCTTTTCCTTCAtt                                             <  1:5334815/93‑1 (MQ=255)

                                           tttCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTTCTTCAtt                                             >  2:1358260/1‑93 (MQ=255)

                                           tttCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCAtt                                             <  2:1202562/93‑1 (MQ=255)

                                             tCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCTTTCATTga                                           <  2:6106874/93‑1 (MQ=255)

                                               aTTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTgaga                                         <  1:5611509/93‑1 (MQ=255)

                                                  gtgCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGc                                      <  1:904032/93‑1 (MQ=255)

                                                  gtgCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGc                                      <  1:2856447/93‑1 (MQ=255)

                                                     cTATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCggg                                   <  1:1973991/93‑1 (MQ=255)

                                                      tATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGCGATGCGGGt                                  >  1:6019638/1‑93 (MQ=255)

                                                      tATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCggga                                  >  1:4148572/1‑92 (MQ=255)

                                                      tATTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGt                                  <  1:340994/93‑1 (MQ=255)

                                                       aTTGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTa                                 <  2:302701/93‑1 (MQ=255)

                                                        ttGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTaa                                <  2:1756485/93‑1 (MQ=255)

                                                        ttGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTaa                                <  1:2097682/93‑1 (MQ=255)

                                                        ttGCCTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTaa                                <  1:3717760/93‑1 (MQ=255)

                                                           ccTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATtc                             >  2:1056261/1‑93 (MQ=255)

                                                           ccTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATtc                             >  1:1787170/1‑93 (MQ=255)

                                                           ccTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATtc                             <  2:5167574/93‑1 (MQ=255)

                                                            cTGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATtct                            >  2:394503/1‑93 (MQ=255)

                                                             tGCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATtctc                           >  2:3960941/1‑93 (MQ=255)

                                                              gCTCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCa                          >  2:3695699/1‑93 (MQ=255)

                                                              gCTCCCAAATTACCTAACACAAGGAGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCa                          <  1:5091568/93‑1 (MQ=255)

                                                              gCTCCCAAATTACCTAACACAAGAGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCa                          <  1:2739397/93‑1 (MQ=255)

                                                                tCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCAtt                        <  1:3682621/93‑1 (MQ=255)

                                                                tCCCAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCAtt                        >  1:5100246/1‑93 (MQ=255)

                                                                 cccAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTa                       >  1:4732761/1‑93 (MQ=255)

                                                                  ccAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTaa                      <  1:3014311/93‑1 (MQ=255)

                                                                  ccAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTaa                      >  2:2623386/1‑93 (MQ=255)

                                                                   cAAATTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAAt                     <  1:1047380/93‑1 (MQ=255)

                                                                    aaaTTACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATc                    <  2:4092521/93‑1 (MQ=255)

                                                                       ttACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAAc                 >  2:1020173/1‑93 (MQ=255)

                                                                       ttACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAAc                 >  2:5213086/1‑93 (MQ=255)

                                                                       ttACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAAc                 <  2:2006798/93‑1 (MQ=255)

                                                                        tACCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACa                >  1:5554124/1‑93 (MQ=255)

                                                                         aCCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAg               <  2:420917/93‑1 (MQ=255)

                                                                         aCCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAg               <  2:4426324/93‑1 (MQ=255)

                                                                         aCCTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTCCATTGAGATGCGGGTAATTCTCATTAATCAACAg               <  1:5383942/93‑1 (MQ=255)

                                                                          ccTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGt              <  1:1618024/93‑1 (MQ=255)

                                                                          ccTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGt              <  2:3198239/93‑1 (MQ=255)

                                                                           cTAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGtt             >  1:424015/1‑93 (MQ=255)

                                                                            tAACACAAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTc            <  2:4553137/93‑1 (MQ=255)

                                                                               cacaAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAAt         <  1:3493133/93‑1 (MQ=255)

                                                                               cacaAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAAt         <  1:4781147/93‑1 (MQ=255)

                                                                               cacaAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGGTCAAt         >  2:3530255/1‑93 (MQ=255)

                                                                                acaAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATa        <  1:5419508/93‑1 (MQ=255)

                                                                                acaAGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATa        <  2:3345764/93‑1 (MQ=255)

                                                                                  aaGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATaaa      >  1:609601/1‑93 (MQ=255)

                                                                                  aaGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATaaa      >  1:6253058/1‑93 (MQ=255)

                                                                                  aaGGGGACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATaaa      <  2:4791374/93‑1 (MQ=255)

                                                                                     gggACACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACgg   <  2:1798574/93‑1 (MQ=255)

                                                                                      ggACACACTTGCGATAAGGATAAAACACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGa  <  1:503484/93‑1 (MQ=255)

TTTTATCCAGCATGACGCGGGTGAAAAGACCATCAAAAACCGCTTTCATTGTGCTATTGCCTGCTCCCAAATTACCTAACACAAGGGGATACACTTGCGATAAGGATAAAAGACCGCGATTATCTTTTCCTTCATTGAGATGCGGGTAATTCTCATTAATCAACAGTTCAATAAACGGA  >  NC_000913/1789546‑1789724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`