BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,969,062	T→C	T552A (ACA→GCA)	tar ←	methyl‑accepting chemotaxis protein II

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,969,062	0	T	C	100.0%	712.8 / NA	217	T552A (ACA→GCA)	tar	methyl‑accepting chemotaxis protein II
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (109/108); total (109/108)

Only 100 of 219 total aligned reads displayed.

AAAACAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGTTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGTTTAT  >  NC_000913/1968972‑1969151

  aaCAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTcc                                                                                       <  2:5888971/93‑1 (MQ=255)

  aaCAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTcc                                                                                       >  2:2611802/1‑93 (MQ=255)

    cAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAACGCTTCCCa                                                                                     <  2:6135568/93‑1 (MQ=255)

     aGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAg                                                                                    >  1:4749682/1‑93 (MQ=255)

     aGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAg                                                                                    <  1:3490594/93‑1 (MQ=255)

      gCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGt                                                                                   >  2:732290/1‑93 (MQ=255)

      gCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGt                                                                                   >  1:5134247/1‑93 (MQ=255)

        gTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGttt                                                                                 >  1:119073/1‑93 (MQ=255)

        gTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGttt                                                                                 >  1:3945181/1‑93 (MQ=255)

          ggTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTgg                                                                               >  1:2171067/1‑93 (MQ=255)

          ggTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTgg                                                                               <  2:1702681/93‑1 (MQ=255)

            tCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGAt                                                                             <  1:5204304/93‑1 (MQ=255)

               aaaTTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATCCTCGTCAAAATGCTTCCCAGTTTGGATCtt                                                                          <  1:2487087/93‑1 (MQ=255)

                aaTTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTg                                                                         >  1:5857324/1‑93 (MQ=255)

                 aTTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGt                                                                        <  2:4754261/93‑1 (MQ=255)

                 aTTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGt                                                                        <  1:855214/93‑1 (MQ=255)

                 aTTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGAACGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGt                                                                        >  2:3330036/1‑93 (MQ=255)

                  ttCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGtt                                                                       >  1:3231687/1‑93 (MQ=255)

                  ttCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGtt                                                                       <  1:657507/93‑1 (MQ=255)

                  ttCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGtt                                                                       >  2:5087383/1‑93 (MQ=255)

                   tCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTc                                                                      >  2:2565433/1‑93 (MQ=255)

                      aaTACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGc                                                                   <  1:4332916/93‑1 (MQ=255)

                       aTACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCa                                                                  <  1:4096110/93‑1 (MQ=255)

                        tACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCaa                                                                 >  2:6284417/1‑93 (MQ=255)

                         aCGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAAt                                                                <  2:1979033/93‑1 (MQ=255)

                         aCGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAAt                                                                >  1:6113551/1‑93 (MQ=255)

                           gATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTc                                                              <  1:2887172/93‑1 (MQ=255)

                            aTTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCg                                                             >  2:6227002/1‑93 (MQ=255)

                             ttAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGc                                                            >  2:2275892/1‑93 (MQ=255)

                             ttAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGc                                                            >  2:2155514/1‑93 (MQ=255)

                             ttAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGc                                                            <  2:4948930/93‑1 (MQ=255)

                              tAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCa                                                           <  2:4108610/93‑1 (MQ=255)

                              tAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCa                                                           <  1:1902215/93‑1 (MQ=255)

                                aaCATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATCCTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGt                                                         <  2:334509/93‑1 (MQ=255)

                                   aTCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGt                                                      <  1:1770497/93‑1 (MQ=255)

                                   aTCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGt                                                      >  2:4206170/1‑93 (MQ=255)

                                   aTCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCCTGTTCAGCAATTCGCAGTCGt                                                      >  1:1308417/1‑93 (MQ=255)

                                    tCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTg                                                     <  2:147804/93‑1 (MQ=255)

                                     cAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTgg                                                    >  2:5120264/1‑93 (MQ=255)

                                      aaCGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGc                                                   >  1:3846135/1‑93 (MQ=255)

                                       aCGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCt                                                  >  2:458686/1‑93 (MQ=255)

                                       aCGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCt                                                  <  1:2745878/93‑1 (MQ=255)

                                       aCGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCt                                                  >  1:5964396/1‑93 (MQ=255)

                                         gCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGa                                                >  2:2356800/1‑93 (MQ=255)

                                         gCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGa                                                <  2:1259128/93‑1 (MQ=255)

                                         gCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGa                                                >  1:3969089/1‑93 (MQ=255)

                                         gCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGa                                                <  1:2022116/93‑1 (MQ=255)

                                          cTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAg                                               >  2:2850530/1‑93 (MQ=255)

                                           tCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGc                                              >  1:3033802/1‑93 (MQ=255)

                                           tCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGc                                              >  1:4954614/1‑93 (MQ=255)

                                             cccATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCg                                            >  1:3111251/1‑93 (MQ=255)

                                              ccATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCgg                                           >  1:2771336/1‑93 (MQ=255)

                                               cATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggt                                          <  1:3791456/93‑1 (MQ=255)

                                               cATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggg                                          >  1:4988475/1‑92 (MQ=255)

                                                aTCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggtg                                         >  1:4094472/1‑93 (MQ=255)

                                                 tCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggtgg                                        >  2:2544539/1‑93 (MQ=255)

                                                 tCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggtgg                                        >  1:1457563/1‑93 (MQ=255)

                                                 tCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggtgg                                        >  2:387673/1‑93 (MQ=255)

                                                 tCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggtgg                                        >  1:3842305/1‑93 (MQ=255)

                                                 tCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggggg                                        >  2:2448502/1‑93 (MQ=255)

                                                  cAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCggtggt                                       <  2:1879222/93‑1 (MQ=255)

                                                        gcAATGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCa                                 >  1:5210210/1‑93 (MQ=255)

                                                          aaTGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGGTCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACt                               >  2:5661919/1‑93 (MQ=255)

                                                          aaTGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACt                               >  2:1778269/1‑93 (MQ=255)

                                                           aTGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTg                              <  2:6063373/93‑1 (MQ=255)

                                                           aTGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTg                              <  2:4816627/93‑1 (MQ=255)

                                                            tGACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTgg                             >  2:4308036/1‑93 (MQ=255)

                                                             gACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGc                            <  2:5849276/93‑1 (MQ=255)

                                                             gACCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGc                            >  2:3670151/1‑93 (MQ=255)

                                                              aCCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCa                           <  2:5328632/93‑1 (MQ=255)

                                                              aCCGCGTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCa                           <  1:4496955/93‑1 (MQ=255)

                                                                cgcgTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAgg                         >  1:5727965/1‑93 (MQ=255)

                                                                 gcgTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGa                        <  2:5963330/93‑1 (MQ=255)

                                                                 gcgTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGa                        <  1:3368463/93‑1 (MQ=255)

                                                                  cgTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGAc                       >  2:4053189/1‑93 (MQ=255)

                                                                  cgTTAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGAc                       <  1:2447384/93‑1 (MQ=255)

                                                                    ttAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCCCTGGCAGGGCgg                     >  2:2711328/1‑93 (MQ=255)

                                                                    ttAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACgg                     >  2:5352233/1‑93 (MQ=255)

                                                                    ttAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACgg                     >  1:1027563/1‑93 (MQ=255)

                                                                     tAGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACggg                    >  2:487544/1‑93 (MQ=255)

                                                                      aGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGa                   <  2:4533242/93‑1 (MQ=255)

                                                                      aGTAAATACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGa                   <  1:901555/93‑1 (MQ=255)

                                                                       gTAAATACTAGTCAAAATGCTTCCCAGTTTGAATCTTGTTCAGCAATTCGAAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGAt                  <  2:1733792/93‑1 (MQ=255)

                                                                          aaTACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGgt               <  1:763192/93‑1 (MQ=255)

                                                                            tACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGgtgt             >  1:4432768/1‑93 (MQ=255)

                                                                            tACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGgtgt             <  1:533381/93‑1 (MQ=255)

                                                                            tACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGgggt             >  2:3128719/1‑93 (MQ=255)

                                                                            tACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGgggt             >  2:1123241/1‑93 (MQ=255)

                                                                            tACTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGAAGGGATGgtgt             <  1:141286/93‑1 (MQ=255)

                                                                             aCTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGtt            <  2:4597377/93‑1 (MQ=255)

                                                                             aCTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGtt            <  1:5499989/93‑1 (MQ=255)

                                                                              cTCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGttt           <  2:1353541/93‑1 (MQ=255)

                                                                               tCGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTg          <  1:1889373/93‑1 (MQ=255)

                                                                                cGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGc         <  1:2559634/93‑1 (MQ=255)

                                                                                cGTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGc         <  1:6241463/93‑1 (MQ=255)

                                                                                 gTCAAAATGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCg        <  2:2338845/93‑1 (MQ=255)

                                                                                    aaaaTGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGtt     >  1:1530482/1‑93 (MQ=255)

                                                                                    aaaaTGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGtt     >  2:66968/1‑93 (MQ=255)

                                                                                     aaaTGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGttt    <  2:4217823/93‑1 (MQ=255)

                                                                                      aaTGCTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGTTTa   <  2:2492739/93‑1 (MQ=255)

AAAACAGCGTGGTCGAAATTCGAATACGATTAAACATCAACGCTCCCCATCAGGCGGCAATGACCGCGTTAGTAAATACTCGTCAAAATGTTTCCCAGTTTGGATCTTGTTCAGCAATTCGCAGTCGTGGCTGAGCCGGTGGTTGCTCACTGGCAGGACGGGATGGTGTTTGCGGTTTAT  >  NC_000913/1968972‑1969151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`