Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,010,781 T→C N86N (AAT→AAC
I86V (ATT→GTT) 
b1936 →
fliE ←
hypothetical protein
FliE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,010,7810TC99.1% 713.3 / NA 222N86N (AAT→AAC
I86V (ATT→GTT) 
b1936
fliE
hypothetical protein
FliE
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (104/116);  minor base A (1/1);  total (105/117)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 240 total aligned reads displayed.

ATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCT  >  NC_000913/2010691‑2010869
                                                                                          |                                                                                        
aTCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAccc                                                                                        <  2:6230451/93‑1 (MQ=255)
aTCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAccc                                                                                        >  2:4913488/1‑93 (MQ=255)
 tCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCATTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAcccc                                                                                       <  1:4429106/93‑1 (MQ=255)
 tCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAcccc                                                                                       >  1:931216/1‑93 (MQ=255)
 tCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAcccc                                                                                       >  2:2517325/1‑93 (MQ=255)
  cGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACcccc                                                                                      <  1:2476227/93‑1 (MQ=255)
   ggATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCa                                                                                     >  1:1443258/1‑93 (MQ=255)
   ggATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCa                                                                                     <  1:4529872/93‑1 (MQ=255)
    gATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAt                                                                                    >  2:6030771/1‑93 (MQ=255)
    gATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAt                                                                                    <  2:1253089/93‑1 (MQ=255)
     aTGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAtt                                                                                   >  2:5204548/1‑93 (MQ=255)
     aTGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAtt                                                                                   >  1:4633274/1‑93 (MQ=255)
      tGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAttt                                                                                  >  2:3414012/1‑93 (MQ=255)
        tAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGc                                                                                >  1:2492965/1‑93 (MQ=255)
         aaTTAACAACAGGTTACAAAACCTATACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACACCCATTTGCa                                                                               >  2:737036/1‑93 (MQ=255)
         aaTTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCa                                                                               <  1:695434/93‑1 (MQ=255)
         aaTTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCa                                                                               <  1:3548953/93‑1 (MQ=255)
          aTTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCAt                                                                              <  2:5543900/93‑1 (MQ=255)
          aTTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCAt                                                                              >  1:3423810/1‑93 (MQ=255)
          aTTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAACCCCATTTGCAt                                                                              <  2:5603526/93‑1 (MQ=255)
           ttAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGTCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATa                                                                             <  2:5136521/93‑1 (MQ=255)
           ttAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATa                                                                             >  1:2601339/1‑93 (MQ=255)
           ttAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATa                                                                             <  1:4987003/93‑1 (MQ=255)
           ttAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATa                                                                             <  1:179326/93‑1 (MQ=255)
            tAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAg                                                                            <  2:2743560/93‑1 (MQ=255)
             aacaacAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGa                                                                           <  1:4029379/93‑1 (MQ=255)
              acaacaGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGaa                                                                          >  1:3376545/1‑93 (MQ=255)
                 acaGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACt                                                                       <  1:102473/93‑1 (MQ=255)
                 acaGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCAATTGCATAGAAACt                                                                       >  1:3600830/1‑93 (MQ=255)
                  caGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTg                                                                      >  1:1412537/1‑93 (MQ=255)
                  caGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTg                                                                      <  2:229299/93‑1 (MQ=255)
                  caGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTg                                                                      >  1:6045886/1‑93 (MQ=255)
                   aGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGa                                                                     >  2:428447/1‑93 (MQ=255)
                    ggTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAg                                                                    <  1:3287059/93‑1 (MQ=255)
                       tACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCt                                                                 <  1:1503127/93‑1 (MQ=255)
                         cAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCttt                                                               <  1:1999163/93‑1 (MQ=255)
                         cAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCttt                                                               <  1:5224687/93‑1 (MQ=255)
                          aaaaCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCtttt                                                              >  1:1202108/1‑93 (MQ=255)
                            aaCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTg                                                            >  1:2104262/1‑93 (MQ=255)
                            aaCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTg                                                            >  2:2865943/1‑93 (MQ=255)
                            aaCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTg                                                            >  1:6150835/1‑93 (MQ=255)
                            aaCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTg                                                            >  2:3172987/1‑93 (MQ=255)
                             aCCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGc                                                           >  1:3816739/1‑93 (MQ=255)
                             aCCTACACCTGCATGCGCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGc                                                           >  2:4128748/1‑93 (MQ=255)
                              ccTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCa                                                          <  1:5966606/93‑1 (MQ=255)
                               cTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCat                                                         >  2:2943114/1‑93 (MQ=255)
                                tACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCata                                                        <  1:1954427/93‑1 (MQ=255)
                                 acacCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCatat                                                       <  2:5751797/93‑1 (MQ=255)
                                  cacCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATc                                                      >  2:175372/1‑93 (MQ=255)
                                   acCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCg                                                     >  1:5123327/1‑93 (MQ=255)
                                   acCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCg                                                     <  2:1564749/93‑1 (MQ=255)
                                    ccTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCgg                                                    <  2:3742274/93‑1 (MQ=255)
                                      tGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtc                                                  <  1:711095/93‑1 (MQ=255)
                                       gCATGCTCCTCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtca                                                 >  2:6152847/1‑93 (MQ=255)
                                       gCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtca                                                 >  2:332058/1‑93 (MQ=255)
                                       gCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtca                                                 >  2:1330431/1‑93 (MQ=255)
                                        cATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtcat                                                >  1:388015/1‑93 (MQ=255)
                                         aTGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtcatc                                               >  2:3233236/1‑93 (MQ=255)
                                         aTGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtcatc                                               <  1:1656329/93‑1 (MQ=255)
                                            cTCATCACTTCCTGATACGCCGCCGCCAGCTTATTACGCACCTGAACCCCCATATGCATAGAAACTGAGGCTTTTTGCATATCGGTCATcaca                                            >  1:3298086/1‑93 (MQ=255)
                                             tcatcaCTTCCTGATACGCCGCCACCAGCTTATTACGCTCCTGAACCCCCATTTGCATAGAAACTGAGTCTTTTTGCATATCGGTCATCACAt                                           <  2:615894/93‑1 (MQ=255)
                                             tcatcaCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACAt                                           >  2:1791507/1‑93 (MQ=255)
                                              catcaCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc                                          >  1:2569436/1‑93 (MQ=255)
                                              catcaCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATc                                          >  1:5436529/1‑93 (MQ=255)
                                               atcaCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCg                                         <  2:3479262/93‑1 (MQ=255)
                                                tcaCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGt                                        >  1:51466/1‑93 (MQ=255)
                                                 caCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGtt                                       >  1:839974/1‑93 (MQ=255)
                                                  aCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGttt                                      >  1:4732880/1‑93 (MQ=255)
                                                  aCTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGttt                                      <  1:2660824/93‑1 (MQ=255)
                                                      ccTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacg                                  >  2:4710465/1‑93 (MQ=255)
                                                       cTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgc                                 <  2:3030992/93‑1 (MQ=255)
                                                         gATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgcca                               <  1:2933089/93‑1 (MQ=255)
                                                          aTACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccac                              <  2:5272740/93‑1 (MQ=255)
                                                          aTACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccac                              <  1:1913726/93‑1 (MQ=255)
                                                          aTACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccac                              >  2:1070464/1‑93 (MQ=255)
                                                             cgccgcCACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacgcc                           <  2:4478449/93‑1 (MQ=255)
                                                               ccgccACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCgg                         <  1:3183077/93‑1 (MQ=255)
                                                                 gccACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGt                       >  2:5006890/1‑93 (MQ=255)
                                                                 gccACCAGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGt                       <  2:268621/93‑1 (MQ=255)
                                                                  ccaccaGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGtt                      <  2:5849434/93‑1 (MQ=255)
                                                                    accaGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCa                    >  1:1379449/1‑93 (MQ=255)
                                                                    accaGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCa                    <  2:2248187/93‑1 (MQ=255)
                                                                     ccaGCTTATTTCTCACCTGATCCTTTATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCAc                   <  2:1956357/93‑1 (MQ=255)
                                                                     ccaGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCAc                   <  2:4081996/93‑1 (MQ=255)
                                                                     ccaGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCAc                   <  1:5325678/93‑1 (MQ=255)
                                                                       aGCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGCTCACCg                 >  2:385484/1‑93 (MQ=255)
                                                                        gCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCga                <  2:852080/93‑1 (MQ=255)
                                                                        gCTTATTACGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCga                >  1:3037655/1‑93 (MQ=255)
                                                                          ttattaCGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCgaga              >  2:2573477/1‑93 (MQ=255)
                                                                          ttattaCGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCgaga              <  1:5663217/93‑1 (MQ=255)
                                                                            attaCGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGt            >  2:5117559/1‑93 (MQ=255)
                                                                               aCGCACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGaa         >  2:5112132/1‑93 (MQ=255)
                                                                                  cACCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAAttt      >  2:4805592/1‑93 (MQ=255)
                                                                                   aCCTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAAtttt     <  1:5775501/93‑1 (MQ=255)
                                                                                    ccTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAAttttt    >  2:454064/1‑93 (MQ=255)
                                                                                    ccTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAAttttt    >  2:1456443/1‑93 (MQ=255)
                                                                                     cTGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTc   <  1:1084393/93‑1 (MQ=255)
                                                                                      tGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTct  >  2:4420477/1‑93 (MQ=255)
                                                                                      tGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTct  <  2:3528251/93‑1 (MQ=255)
                                                                                      tGAACCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTct  >  1:3643432/1‑93 (MQ=255)
                                                                                          |                                                                                        
ATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCT  >  NC_000913/2010691‑2010869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: