BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,753,655	T→C	intergenic (+256/‑525)	smpB → / → intA	small protein B/prophage CP4‑57 integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,753,655	0	T	C	100.0%	722.3 / NA	225	intergenic (+256/‑525)	smpB/intA	small protein B/prophage CP4‑57 integrase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (101/124); total (101/124)

Only 100 of 232 total aligned reads displayed.

GAGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCT  >  NC_000913/2753565‑2753744

 aGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCa                                                                                        >  2:2241315/1‑93 (MQ=255)

 aGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCa                                                                                        >  2:2098698/1‑93 (MQ=255)

  ggCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCAt                                                                                       <  2:2002983/93‑1 (MQ=255)

   gCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATg                                                                                      <  2:1449398/93‑1 (MQ=255)

       gTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGa                                                                                  <  2:4228730/93‑1 (MQ=255)

       gTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGa                                                                                  <  1:3367030/93‑1 (MQ=255)

        tCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAg                                                                                 >  1:5737011/1‑93 (MQ=255)

         cATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAgg                                                                                <  2:3838906/93‑1 (MQ=255)

         cATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAgg                                                                                >  2:373305/1‑93 (MQ=255)

          aTGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAggg                                                                               >  1:1439597/1‑93 (MQ=255)

          aTGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAggg                                                                               <  2:1944679/93‑1 (MQ=255)

           tGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAgggg                                                                              <  1:4659183/93‑1 (MQ=255)

           tGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAgggg                                                                              >  1:6075363/1‑93 (MQ=255)

           tGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAgggg                                                                              <  1:2491985/93‑1 (MQ=255)

            ggCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGc                                                                             <  2:903343/93‑1 (MQ=255)

               gcTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGt                                                                          <  1:3964182/93‑1 (MQ=255)

                cTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGtt                                                                         >  1:5257200/1‑93 (MQ=255)

                cTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGtt                                                                         <  2:4121602/93‑1 (MQ=255)

                 tCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTg                                                                        >  1:5373468/1‑93 (MQ=255)

                 tCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTg                                                                        <  1:4869173/93‑1 (MQ=255)

                 tCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTg                                                                        <  1:3337825/93‑1 (MQ=255)

                 tCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTg                                                                        >  2:5448911/1‑93 (MQ=255)

                  cATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTgg                                                                       >  2:1520151/1‑93 (MQ=255)

                  cATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTgc                                                                       >  1:4023407/1‑92 (MQ=255)

                     aaaTCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCt                                                                    <  1:938200/93‑1 (MQ=255)

                      aaTCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTc                                                                   >  1:2890622/1‑93 (MQ=255)

                       aTCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCg                                                                  >  1:5150398/1‑93 (MQ=255)

                       aTCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCg                                                                  <  1:4615148/93‑1 (MQ=255)

                        tCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGt                                                                 >  1:5947107/1‑93 (MQ=255)

                            gTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTaaaa                                                             <  2:2702222/93‑1 (MQ=255)

                             tataCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTaaaaa                                                            <  1:5826318/93‑1 (MQ=255)

                              ataCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAg                                                           <  2:4002536/93‑1 (MQ=255)

                               taCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAGAAGc                                                          >  1:318608/1‑93 (MQ=255)

                               taCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGc                                                          <  2:6079169/93‑1 (MQ=255)

                               taCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGc                                                          >  1:2098612/1‑93 (MQ=255)

                                tcTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGcc                                                         <  1:4353444/92‑1 (MQ=255)

                                aCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGcc                                                         <  2:1874062/93‑1 (MQ=255)

                                 cTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCg                                                        >  2:5726187/1‑93 (MQ=255)

                                 cTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCg                                                        >  1:4964094/1‑93 (MQ=255)

                                 cTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCg                                                        >  2:3593410/1‑93 (MQ=255)

                                   tACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCTGCa                                                      >  1:5428386/1‑93 (MQ=255)

                                   tACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCa                                                      <  1:1739348/93‑1 (MQ=255)

                                   tACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCa                                                      >  1:2029963/1‑93 (MQ=255)

                                    aCCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaa                                                     >  2:2990300/1‑93 (MQ=255)

                                     ccTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaaa                                                    >  1:1461423/1‑93 (MQ=255)

                                      cTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaaaa                                                   >  2:3455539/1‑93 (MQ=255)

                                      cTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaaaa                                                   <  1:185224/93‑1 (MQ=255)

                                      cTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaaaa                                                   >  1:1280351/1‑93 (MQ=255)

                                       tttACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaaaaa                                                  >  2:883021/1‑93 (MQ=255)

                                       tttACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACACAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAGAAGCCGCaaaaa                                                  >  1:1078653/1‑93 (MQ=255)

                                         tACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAAt                                                <  2:799201/93‑1 (MQ=255)

                                         tACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAAt                                                >  1:2948472/1‑93 (MQ=255)

                                          acacATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATa                                               >  1:3909897/1‑93 (MQ=255)

                                          acacATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATa                                               <  1:717768/93‑1 (MQ=255)

                                          acacATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATa                                               >  1:4122795/1‑93 (MQ=255)

                                            acaTTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGt                                             <  2:5128291/93‑1 (MQ=255)

                                            acaTTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGt                                             <  1:4466659/93‑1 (MQ=255)

                                             caTTGGGGCTGATTCTGGATTCGACGGGATTTGCGAACCCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTc                                            <  1:4839203/93‑1 (MQ=255)

                                             caTTGGGGCTGATTCTGGATTCGACGCGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAgcc                                            <  2:3974043/93‑3 (MQ=255)

                                             caTGGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTc                                            <  2:2477789/93‑1 (MQ=255)

                                              aTTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAACAATAGTCg                                           >  2:5333991/1‑93 (MQ=255)

                                               ttGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGc                                          >  2:5030184/1‑93 (MQ=255)

                                                tGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCa                                         <  2:2150026/93‑1 (MQ=255)

                                                  gggCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCaaa                                       <  1:3539041/93‑1 (MQ=255)

                                                   ggCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAac                                      >  1:2425183/1‑93 (MQ=255)

                                                   ggCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGACTCGTAAAAAGCCGCAAAAAATAGTCGCAAac                                      >  2:3269151/1‑93 (MQ=255)

                                                    gCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAacg                                     <  2:5159812/93‑1 (MQ=255)

                                                     gtGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAacga                                    <  2:3278566/92‑1 (MQ=255)

                                                     cTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAacga                                    <  1:3781595/93‑1 (MQ=255)

                                                      tGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAacgac                                   >  2:3496688/1‑93 (MQ=255)

                                                       gATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAacgacg                                  >  1:3481534/1‑93 (MQ=255)

                                                            tGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAAc                             >  1:1563362/1‑93 (MQ=255)

                                                            tGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAAc                             >  2:4269538/1‑93 (MQ=255)

                                                              gATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTa                           <  1:2794935/93‑1 (MQ=255)

                                                               aTTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTAc                          >  1:4703132/1‑93 (MQ=255)

                                                               aTTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGACGCAAACGACGAAAACTAc                          <  2:6133637/93‑1 (MQ=255)

                                                                tgcGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACg                         <  2:2408270/91‑1 (MQ=255)

                                                                 tCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGc                        <  2:4783570/93‑1 (MQ=255)

                                                                    aCGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCCAAAAATAGTCGCAAACGACGAAAACTACGCttt                     >  1:2411306/1‑93 (MQ=255)

                                                                    aCGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCttt                     >  2:6237500/1‑93 (MQ=255)

                                                                     cGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTa                    >  1:2262530/1‑93 (MQ=255)

                                                                     cGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTa                    <  1:5586332/93‑1 (MQ=255)

                                                                      gggATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTag                   >  1:3177730/1‑93 (MQ=255)

                                                                       ggATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTagc                  >  1:3603650/1‑93 (MQ=255)

                                                                        gATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTagca                 <  2:4701037/93‑1 (MQ=255)

                                                                          tttGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTagcagc               >  1:4772574/1‑93 (MQ=255)

                                                                           ttGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCt              <  2:1575381/93‑1 (MQ=255)

                                                                              cGAAGCCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTtaa           <  1:1759080/93‑1 (MQ=255)

                                                                              cGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTtaa           >  1:2729904/1‑93 (MQ=255)

                                                                               gAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTtaat          <  2:4958626/93‑1 (MQ=255)

                                                                               gAAACCCAAGGCGCATGCCGAGGGGCGGTGGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTtaat          <  1:1018619/93‑1 (MQ=255)

                                                                                  aCCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAAc       <  1:1202966/93‑1 (MQ=255)

                                                                                   cccAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAAcc      >  2:1314002/1‑93 (MQ=255)

                                                                                   cccAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAAcc      <  2:3222691/93‑1 (MQ=255)

                                                                                    ccAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCt     <  1:2990300/93‑1 (MQ=255)

                                                                                     cAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTg    >  2:438570/1‑93 (MQ=255)

                                                                                     cAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTg    <  2:1083150/93‑1 (MQ=255)

                                                                                      aaGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGc   >  1:5686980/1‑93 (MQ=255)

                                                                                       aGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCt  <  2:1832777/93‑1 (MQ=255)

                                                                                       aGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCt  >  1:6200081/1‑93 (MQ=255)

GAGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCT  >  NC_000913/2753565‑2753744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`