BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,754,691	T→C	V171A (GTT→GCT)	intA →	prophage CP4‑57 integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,754,691	0	T	C	100.0%	810.2 / NA	249	V171A (GTT→GCT)	intA	prophage CP4‑57 integrase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (115/134); total (115/134)

Only 100 of 251 total aligned reads displayed.

CAATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGTTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGA  >  NC_000913/2754601‑2754779

cAATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTc                                                                                        <  2:90779/93‑1 (MQ=255)

cAATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTc                                                                                        <  2:6238107/93‑1 (MQ=255)

     ggTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTcgccgc                                                                                   <  2:5351829/93‑1 (MQ=255)

     ggTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTcgccgc                                                                                   >  1:434882/1‑93 (MQ=255)

      gTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGCTTAAAGCAGTTCAGCCGGTTCACGCCAGAGGTGCATTAGAGACTGCTCgccgcc                                                                                  <  2:5033607/93‑1 (MQ=255)

       tGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCt                                                                                 <  2:3899425/93‑1 (MQ=255)

       tGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCt                                                                                 >  1:1023254/1‑93 (MQ=255)

         atatCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCttt                                                                               >  2:2251291/1‑93 (MQ=255)

          tatCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTg                                                                              >  1:727922/1‑93 (MQ=255)

          tatCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTg                                                                              <  1:5364374/93‑1 (MQ=255)

          tatCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTg                                                                              <  1:353320/93‑1 (MQ=255)

           atCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGt                                                                             >  2:1163488/1‑93 (MQ=255)

            tCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTc                                                                            >  2:5834690/1‑93 (MQ=255)

            tCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTc                                                                            >  2:4495730/1‑93 (MQ=255)

             cAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCa                                                                           <  2:2793495/93‑1 (MQ=255)

              aGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAg                                                                          <  2:2746228/93‑1 (MQ=255)

                tATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCg                                                                        >  2:2101729/1‑93 (MQ=255)

                 aTCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGt                                                                       <  2:2416703/93‑1 (MQ=255)

                  tCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTa                                                                      >  2:5216804/1‑93 (MQ=255)

                  tCACTGAGATTAAGGATCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTa                                                                      <  1:6306084/93‑1 (MQ=255)

                   cACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGTTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTAt                                                                     <  2:680312/93‑1 (MQ=255)

                   cACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTAt                                                                     <  1:2666846/93‑1 (MQ=255)

                    aCTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTAtt                                                                    <  2:3849208/93‑1 (MQ=255)

                    aCTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTAtt                                                                    >  1:3879222/1‑93 (MQ=255)

                     cTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTa                                                                   >  1:2627070/1‑93 (MQ=255)

                     cTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGATCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTa                                                                   >  1:4448130/1‑93 (MQ=255)

                      tGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTaa                                                                  <  1:2408221/93‑1 (MQ=255)

                      tGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTaa                                                                  >  1:1078805/1‑93 (MQ=255)

                      tGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTaa                                                                  <  1:2227935/93‑1 (MQ=255)

                        agaTTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACg                                                                <  1:2539718/93‑1 (MQ=255)

                         gaTTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGa                                                               <  1:3747836/93‑1 (MQ=255)

                          aTTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGaa                                                              >  1:3793538/1‑93 (MQ=255)

                          aTTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGaa                                                              <  1:6172680/93‑1 (MQ=255)

                           ttAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCCTATTAACGAAg                                                             <  1:5729420/93‑1 (MQ=255)

                             aaGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTc                                                           <  1:3327845/93‑1 (MQ=255)

                              aGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCa                                                          <  2:3306153/93‑1 (MQ=255)

                              aGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCa                                                          <  1:3245121/93‑1 (MQ=255)

                              aGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCa                                                          >  1:1463291/1‑93 (MQ=255)

                              aGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCa                                                          >  2:4715147/1‑93 (MQ=255)

                                gCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATg                                                        >  1:938791/1‑93 (MQ=255)

                                 cTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGa                                                       >  2:26179/1‑93 (MQ=255)

                                  tCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGAt                                                      >  1:5816643/1‑93 (MQ=255)

                                   cATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATCAGAGACTGCTCGCCGCCTTTGTTAGCGTATTAACGAAGTCATGAtt                                                     <  2:5074655/93‑1 (MQ=255)

                                     tACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTa                                                   >  1:2906391/1‑93 (MQ=255)

                                     tACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTa                                                   <  2:5749308/93‑1 (MQ=255)

                                      aCTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTAt                                                  <  2:1078268/93‑1 (MQ=255)

                                        tctGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATgc                                                <  2:1266242/93‑1 (MQ=255)

                                        tctGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATgc                                                >  1:1846024/1‑93 (MQ=255)

                                         ctGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATgcg                                               >  1:5295113/1‑93 (MQ=255)

                                         ctGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATgcg                                               <  2:5330298/93‑1 (MQ=255)

                                         ctGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATgcg                                               <  2:5637662/93‑1 (MQ=255)

                                          tGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATgcgc                                              >  2:4326766/1‑93 (MQ=255)

                                           ggTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCa                                             <  1:1092881/93‑1 (MQ=255)

                                           ggTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCa                                             <  1:3975127/93‑1 (MQ=255)

                                            gTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAg                                            <  1:4539681/93‑1 (MQ=255)

                                             ttAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGa                                           >  1:4386205/1‑93 (MQ=255)

                                             ttAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGa                                           <  1:196591/93‑1 (MQ=255)

                                              tAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGaa                                          >  1:5525323/1‑93 (MQ=255)

                                               aaaGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAac                                         <  1:2389891/93‑1 (MQ=255)

                                               aaaGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAac                                         >  1:1902778/1‑93 (MQ=255)

                                                  gCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAAcaca                                      <  2:1980837/93‑1 (MQ=255)

                                                  gCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAAcaca                                      >  1:4764957/1‑93 (MQ=255)

                                                  gCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAAcaca                                      <  1:6135591/93‑1 (MQ=255)

                                                   cAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAg                                     >  2:5148368/1‑93 (MQ=255)

                                                   cAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAg                                     <  2:3994384/93‑1 (MQ=255)

                                                    aGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAgg                                    >  2:4121413/1‑93 (MQ=255)

                                                      ttCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCCTGATTTATGCGCAGCACACAGGcc                                  >  2:2931450/1‑93 (MQ=255)

                                                      ttCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGcc                                  >  2:4883311/1‑93 (MQ=255)

                                                      ttCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGcc                                  <  1:5027256/93‑1 (MQ=255)

                                                       tCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCt                                 <  2:4458224/93‑1 (MQ=255)

                                                            cGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgattg                            <  2:2510680/93‑1 (MQ=255)

                                                             ggTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgattga                           <  2:2342009/93‑1 (MQ=255)

                                                             ggTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgattga                           >  1:3131471/1‑93 (MQ=255)

                                                             ggTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgattga                           <  2:5822422/93‑1 (MQ=255)

                                                              gTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgattgat                          <  2:606176/93‑1 (MQ=255)

                                                              gTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgattgat                          <  1:4950674/93‑1 (MQ=255)

                                                              gTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgattgat                          <  1:1797017/93‑1 (MQ=255)

                                                              gTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgattgat                          <  1:918040/93‑1 (MQ=255)

                                                                tCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGc                        <  2:6018453/93‑1 (MQ=255)

                                                                tCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGc                        >  1:5602824/1‑93 (MQ=255)

                                                                 cAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCt                       <  2:1319745/93‑1 (MQ=255)

                                                                    gCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGtt                    <  1:2307608/93‑1 (MQ=255)

                                                                      cAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTcc                  <  2:4855869/93‑1 (MQ=255)

                                                                       agagGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCt                 >  2:4598665/1‑93 (MQ=255)

                                                                       agagGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCt                 >  1:1599365/1‑93 (MQ=255)

                                                                       agagGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCt                 >  2:5813193/1‑93 (MQ=255)

                                                                        gagGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTa                <  2:1686333/93‑1 (MQ=255)

                                                                        gagGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTa                >  2:1525740/1‑93 (MQ=255)

                                                                          ggTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAgt              <  1:745250/93‑1 (MQ=255)

                                                                          ggTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAgt              >  2:112997/1‑93 (MQ=255)

                                                                           gTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAgtg             <  1:1273459/93‑1 (MQ=255)

                                                                           gTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAgtg             <  2:2985405/93‑1 (MQ=255)

                                                                            tGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAgtgt            <  2:1402927/93‑1 (MQ=255)

                                                                            tGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAgtgt            <  2:4257199/93‑1 (MQ=255)

                                                                              cATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTaa          >  2:5554389/1‑93 (MQ=255)

                                                                                 tAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAata       <  1:6011570/93‑1 (MQ=255)

                                                                                  agagACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAatat      <  2:5924146/93‑1 (MQ=255)

                                                                                    agaCTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCg    >  2:5461172/1‑93 (MQ=255)

                                                                                     gaCTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCgg   <  2:3380626/93‑1 (MQ=255)

                                                                                      aCTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGa  >  1:5098467/1‑93 (MQ=255)

CAATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGTTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGA  >  NC_000913/2754601‑2754779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`