BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,796,091	A→G	intergenic (+26/+21)	ygaP → / ← stpA	hypothetical protein/StpA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,796,091	0	A	G	100.0%	670.2 / NA	209	intergenic (+26/+21)	ygaP/stpA	hypothetical protein/StpA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (102/107); total (102/107)

Only 100 of 220 total aligned reads displayed.

GAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCC  >  NC_000913/2796001‑2796180

   tCAGCGGTGTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGAc                                                                                      >  2:6142383/1‑93 (MQ=255)

    cAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACa                                                                                     >  2:864736/1‑93 (MQ=255)

    cAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACa                                                                                     <  2:3606738/93‑1 (MQ=255)

     aGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACAt                                                                                    >  1:6219919/1‑93 (MQ=255)

     aGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACAt                                                                                    <  1:843531/93‑1 (MQ=255)

      gCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATc                                                                                   <  1:52560/93‑1 (MQ=255)

       cGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATcc                                                                                  <  2:4531985/93‑1 (MQ=255)

       cGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGAGGCGTCAtac                                                                                  >  1:133130/1‑91 (MQ=255)

        ggTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCg                                                                                 >  1:6268297/1‑93 (MQ=255)

         gTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCgg                                                                                >  2:3556699/1‑93 (MQ=255)

          tttttGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGc                                                                               <  1:514361/93‑1 (MQ=255)

          ttgttGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGc                                                                               <  1:4434666/90‑1 (MQ=255)

             ttGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTc                                                                            <  2:677658/93‑1 (MQ=255)

             ttGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTc                                                                            <  2:4413295/93‑1 (MQ=255)

               gtgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAg                                                                          >  2:1991005/1‑93 (MQ=255)

               gtgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAg                                                                          <  2:3867639/93‑1 (MQ=255)

                tgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGt                                                                         <  1:1496004/93‑1 (MQ=255)

                tgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGt                                                                         <  1:4461584/93‑1 (MQ=255)

                 ggAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTa                                                                        <  1:4054938/93‑1 (MQ=255)

                   aaTGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAAt                                                                      <  2:3743155/93‑1 (MQ=255)

                   aaTGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAAt                                                                      >  1:3858233/1‑93 (MQ=255)

                    aTGGCAGGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAAtt                                                                     <  1:1112362/93‑1 (MQ=255)

                    aTGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAAtt                                                                     >  1:4883999/1‑93 (MQ=255)

                    aTGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAAtt                                                                     >  1:3842956/1‑93 (MQ=255)

                    aTGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGACGACATCCGGCCTCAGTAAtt                                                                     <  2:2910677/93‑1 (MQ=255)

                     tGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTa                                                                    <  2:332704/93‑1 (MQ=255)

                     tGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTa                                                                    >  1:135468/1‑93 (MQ=255)

                     tGGCAAGGGTGTTAGATAAGATGCCGTGGAAACAACGAGGTTGAGAAACGAAGCCCGACGGGCCCTAGCGGGGGCATCCGGGCTCTGTCATTa                                                                    >  2:647508/1‑93 (MQ=255)

                       gCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGa                                                                  <  2:4285230/93‑1 (MQ=255)

                        cAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGAt                                                                 >  2:5196023/1‑93 (MQ=255)

                         aaGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATc                                                                <  1:3748049/93‑1 (MQ=255)

                         aaGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATc                                                                <  1:3435407/93‑1 (MQ=255)

                          aGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCa                                                               <  1:5024202/93‑1 (MQ=255)

                          aGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCa                                                               >  2:209749/1‑93 (MQ=255)

                          aGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCa                                                               <  1:355823/93‑1 (MQ=255)

                          aGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCa                                                               >  1:4102297/1‑93 (MQ=255)

                             ttgttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGa                                                            <  1:1639758/93‑1 (MQ=255)

                               gttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGaaa                                                          >  1:1999278/1‑93 (MQ=255)

                               gttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGaaa                                                          <  1:1970674/93‑1 (MQ=255)

                                ttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAt                                                         >  2:5306151/1‑93 (MQ=255)

                                  aGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAtcg                                                       >  1:3274188/1‑93 (MQ=255)

                                  aGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAtcg                                                       >  2:1745915/1‑93 (MQ=255)

                                   gATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAtcgt                                                      >  2:5996905/1‑93 (MQ=255)

                                    aTAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAtcgtc                                                     >  1:2667838/1‑93 (MQ=255)

                                     tAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAAtcgtcg                                                    >  1:1012203/1‑93 (MQ=255)

                                      aaGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCga                                                   <  1:1034425/93‑1 (MQ=255)

                                      aaGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCga                                                   <  1:2121243/93‑1 (MQ=255)

                                        gATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgaga                                                 >  2:5854641/1‑93 (MQ=255)

                                         aTGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgagag                                                >  2:2631282/1‑93 (MQ=255)

                                          tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgagaga                                               <  1:948538/93‑1 (MQ=255)

                                          tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgagaga                                               <  2:1011258/93‑1 (MQ=255)

                                           gCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGAt                                              <  2:4619610/93‑1 (MQ=255)

                                           gCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGAt                                              <  2:550487/93‑1 (MQ=255)

                                             cGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGAttt                                            >  2:320462/1‑93 (MQ=255)

                                              gTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGTCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTa                                           <  1:4224297/93‑1 (MQ=255)

                                              gTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTa                                           <  1:2916958/93‑1 (MQ=255)

                                              gTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTa                                           >  1:3954954/1‑93 (MQ=255)

                                              gTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTa                                           <  2:2468346/93‑1 (MQ=255)

                                              gTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTa                                           <  1:1237212/93‑1 (MQ=255)

                                               tGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTAc                                          <  2:1210669/93‑1 (MQ=255)

                                                ggAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCTTAAGTAATTAGATCAGGAAATCGTCGAGAGATTTAcc                                         <  2:6176514/93‑1 (MQ=255)

                                                ggAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTAcc                                         >  1:1370267/1‑93 (MQ=255)

                                                ggAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTAcc                                         >  2:1270087/1‑93 (MQ=255)

                                                 gAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCt                                        <  2:4708693/93‑1 (MQ=255)

                                                  aaCCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCtt                                       <  1:2426500/93‑1 (MQ=255)

                                                  aaCCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCtt                                       <  2:487236/93‑1 (MQ=255)

                                                   aCCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTc                                      >  2:175542/1‑93 (MQ=255)

                                                   aCCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTc                                      <  1:3345249/93‑1 (MQ=255)

                                                     cAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTg                                    >  1:2332538/1‑93 (MQ=255)

                                                      aaCGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCTTCGAGAGATTTACCTTCTGc                                   >  1:3612561/1‑93 (MQ=255)

                                                       aCGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGcc                                  >  2:3418720/1‑93 (MQ=255)

                                                       aCGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGcc                                  <  2:5455010/93‑1 (MQ=255)

                                                        cGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCa                                 <  2:3893422/93‑1 (MQ=255)

                                                        cGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCa                                 <  1:5866144/93‑1 (MQ=255)

                                                         gAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAg                                <  1:5954335/93‑1 (MQ=255)

                                                           gCTTGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAgcg                              >  1:3134456/1‑93 (MQ=255)

                                                             ttGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGcc                            >  1:73618/1‑93 (MQ=255)

                                                              tGAGAAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGCAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGGGCCt                           >  2:3770962/1‑93 (MQ=255)

                                                               gagaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTg                          >  2:2308333/1‑93 (MQ=255)

                                                               gagaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCATCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTg                          >  2:5424400/1‑93 (MQ=255)

                                                                agaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGa                         >  2:3042977/1‑93 (MQ=255)

                                                                agaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGa                         <  1:5760814/93‑1 (MQ=255)

                                                                agaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGAATTACCTTCTGCCAGCGCCTGa                         >  2:810319/1‑93 (MQ=255)

                                                                 gaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAg                        >  1:3012937/1‑93 (MQ=255)

                                                                 gaAGCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAg                        <  2:4400573/93‑1 (MQ=255)

                                                                    gCGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCaa                     >  2:4326743/1‑93 (MQ=255)

                                                                     cGACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAAt                    <  2:4908767/93‑1 (MQ=255)

                                                                      gACGCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAAtt                   <  1:4600283/93‑1 (MQ=255)

                                                                         gCCGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGc                >  1:5969840/1‑93 (MQ=255)

                                                                           cGGACGCGCCCTAGCGGCGACATCCGGCCTCCGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCtt              >  2:5840646/1‑93 (MQ=255)

                                                                           cGGACGCGCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCtt              <  1:4860810/93‑1 (MQ=255)

                                                                               cgcgCCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGgt          <  1:1070685/93‑1 (MQ=255)

                                                                                gcgcCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGgtg         <  1:2899568/93‑1 (MQ=255)

                                                                                  gcCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTa       <  1:5646517/93‑1 (MQ=255)

                                                                                  gcCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTa       >  2:2960681/1‑93 (MQ=255)

                                                                                  gcCCTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTa       <  2:402619/93‑1 (MQ=255)

                                                                                   cccTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTAc      <  2:1308758/93‑1 (MQ=255)

                                                                                   cccTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTCGCTTCGGTGTag      >  2:1565949/1‑92 (MQ=255)

                                                                                    ccTAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACg     >  2:504143/1‑93 (MQ=255)

                                                                                      tAGCGGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGc   >  2:76954/1‑93 (MQ=255)

GAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACCTTCTGCCAGCGCCTGAGCAATTGGCTTCGGTGTACGGCC  >  NC_000913/2796001‑2796180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`