BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,997,977	T→C	intergenic (‑64/‑390)	b2865 ← / → b2866	putative lipoprotein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,997,977	0	T	C	100.0%	903.8 / NA	276	intergenic (‑64/‑390)	b2865/b2866	putative lipoprotein/hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (139/137); total (139/137)

Only 100 of 282 total aligned reads displayed.

TTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCTCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGG  >  NC_000913/2997887‑2998066

ttttttATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATccct                                                                                         >  1:5630720/1‑93 (MQ=255)

 tttttATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCtt                                                                                        <  1:5426916/93‑1 (MQ=255)

 tttttATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCtt                                                                                        >  1:5082769/1‑93 (MQ=255)

 tttttATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCtt                                                                                        >  1:2209949/1‑93 (MQ=255)

   tttATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGc                                                                                      <  1:316593/93‑1 (MQ=255)

     tATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCtt                                                                                    >  2:3353079/1‑93 (MQ=255)

       ttCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCt                                                                                  <  2:5618382/93‑1 (MQ=255)

       ttCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCt                                                                                  <  1:1470823/93‑1 (MQ=255)

        tCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTg                                                                                 <  2:2938935/93‑1 (MQ=255)

        tCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTg                                                                                 <  1:2158797/93‑1 (MQ=255)

        tCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTg                                                                                 >  2:1009068/1‑93 (MQ=255)

        tCAGGCGTCCCGCACTCAAAACCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTg                                                                                 <  2:3690738/93‑1 (MQ=255)

          aGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGa                                                                               >  2:5143383/1‑93 (MQ=255)

           ggCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGaa                                                                              >  2:3422308/1‑93 (MQ=255)

           ggCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGaa                                                                              >  1:5482671/1‑93 (MQ=255)

              gTCCCGCTCTTAAAATCTTTCCTCGCGAAAAAAACAAGACCCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGaaaaa                                                                           <  1:375701/93‑1 (MQ=255)

              gTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGaaaaa                                                                           <  2:3885855/93‑1 (MQ=255)

               tCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAAc                                                                          <  2:1559798/93‑1 (MQ=255)

                 ccGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGt                                                                        <  1:2774112/93‑1 (MQ=255)

                  cGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTg                                                                       >  2:4308344/1‑93 (MQ=255)

                     aCTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGTAAAACGTGGTa                                                                    >  2:2863855/1‑93 (MQ=255)

                     aCTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTa                                                                    >  1:5394226/1‑93 (MQ=255)

                     aCTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTa                                                                    >  2:323827/1‑93 (MQ=255)

                      cTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTaa                                                                   <  1:1042921/93‑1 (MQ=255)

                      cTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTaa                                                                   >  1:1149867/1‑93 (MQ=255)

                      cTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTaa                                                                   >  2:4093589/1‑93 (MQ=255)

                       ccAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAAt                                                                  <  2:6069431/92‑1 (MQ=255)

                        cAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATa                                                                 <  1:5600910/93‑1 (MQ=255)

                         aaaaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATag                                                                <  2:2486661/93‑1 (MQ=255)

                         aaaaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATag                                                                >  2:757059/1‑93 (MQ=255)

                         aaaaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATag                                                                >  2:1422318/1‑93 (MQ=255)

                         aaaaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATag                                                                >  2:5970193/1‑93 (MQ=255)

                         aaaaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATag                                                                >  2:3486145/1‑93 (MQ=255)

                          aaaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGTAGCCAGCCTCTTGATACGCAATCCCTTGCTTCTGGAAAAACGTGGTAATaga                                                               >  1:1003033/1‑93 (MQ=255)

                          aaaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATaga                                                               <  2:39583/93‑1 (MQ=255)

                          aaaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATaga                                                               >  2:5346254/1‑93 (MQ=255)

                          aaaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATaga                                                               >  2:844548/1‑93 (MQ=255)

                          aaaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATaga                                                               <  1:5516342/93‑1 (MQ=255)

                           aaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATagag                                                              <  2:1150042/93‑1 (MQ=255)

                                 tCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAagag                                                        >  1:529882/1‑93 (MQ=255)

                                 tCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAagag                                                        <  2:4159080/93‑1 (MQ=255)

                                 tCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAagag                                                        >  1:2116655/1‑93 (MQ=255)

                                  ccTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAgg                                                       >  2:6209657/1‑93 (MQ=255)

                                   cTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGt                                                      <  2:2889969/93‑1 (MQ=255)

                                    tCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGtt                                                     >  2:5413171/1‑93 (MQ=255)

                                    tCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGtt                                                     >  2:4939678/1‑93 (MQ=255)

                                    tCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGtt                                                     <  2:2198773/93‑1 (MQ=255)

                                      gCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTaa                                                   >  1:2269892/1‑93 (MQ=255)

                                      gCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTaa                                                   >  2:2010825/1‑93 (MQ=255)

                                        ttAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAAtt                                                 >  2:1903790/1‑93 (MQ=255)

                                        ttAAAAAACAAGACGCCGCATCATAGCAGCCAGTCTCCTGATACTCAATCCCGGGCAGCTGGTAAAACGAGGTAAGAGAGAAAGAGGATAAtt                                                 >  2:6298120/1‑93 (MQ=255)

                                         tAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTCCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAAttt                                                >  2:2665202/1‑93 (MQ=255)

                                           aaaaaCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCa                                              <  1:5861549/93‑1 (MQ=255)

                                            aaaaCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCAt                                             >  1:1874974/1‑93 (MQ=255)

                                            aaaaCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCAt                                             <  1:2354903/93‑1 (MQ=255)

                                             aaaCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCAtt                                            <  1:2515387/93‑1 (MQ=255)

                                                cAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTgg                                         >  1:705165/1‑93 (MQ=255)

                                                cAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTgg                                         >  1:6073253/1‑93 (MQ=255)

                                                  aGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCa                                       >  1:4649990/1‑93 (MQ=255)

                                                  aGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCa                                       <  1:4003085/93‑1 (MQ=255)

                                                   gACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCaa                                      >  1:6131205/1‑93 (MQ=255)

                                                   gACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCaa                                      >  2:4464991/1‑93 (MQ=255)

                                                     cGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAg                                    >  2:5758739/1‑93 (MQ=255)

                                                      gCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAgg                                   >  1:2919256/1‑93 (MQ=255)

                                                      gCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAgg                                   >  1:869532/1‑93 (MQ=255)

                                                      gCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAgg                                   >  2:6089808/1‑93 (MQ=255)

                                                        cTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGa                                 >  1:1722750/1‑93 (MQ=255)

                                                        cTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGa                                 >  1:3276250/1‑93 (MQ=255)

                                                          tATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAg                               <  1:4930419/93‑1 (MQ=255)

                                                            tCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGTAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTa                             >  1:4439708/1‑93 (MQ=255)

                                                            tCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTa                             >  1:6025551/1‑93 (MQ=255)

                                                             cATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTat                            >  1:5939001/1‑93 (MQ=255)

                                                               tAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTatca                          <  2:2297809/93‑1 (MQ=255)

                                                               tAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTatca                          >  1:3214362/1‑93 (MQ=255)

                                                                agcagcCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTatcat                         <  2:2753734/93‑1 (MQ=255)

                                                                 gcagcCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTatcatc                        <  1:4249426/93‑1 (MQ=255)

                                                                 gcagcCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTatcatc                        >  2:4250087/1‑93 (MQ=255)

                                                                 gcagcCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTatcatc                        <  1:630064/93‑1 (MQ=255)

                                                                 gcagcCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTatcatc                        >  1:4137215/1‑93 (MQ=255)

                                                                 gcagcCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTatcatc                        <  1:4459017/93‑1 (MQ=255)

                                                                     ccagccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCa                    >  1:6200929/1‑93 (MQ=255)

                                                                       agccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCaaa                  >  2:3034228/1‑93 (MQ=255)

                                                                       agccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCaaa                  >  2:2600087/1‑93 (MQ=255)

                                                                         ccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAat                >  2:1945555/1‑93 (MQ=255)

                                                                           tctTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAatat              <  2:1749927/93‑1 (MQ=255)

                                                                           tctTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAatat              <  2:1232502/93‑1 (MQ=255)

                                                                           tctTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAatat              <  1:483454/93‑1 (MQ=255)

                                                                            ctTGATACCCACTCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATAtt             <  2:4598277/93‑1 (MQ=255)

                                                                             ttGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTc            <  2:5005854/93‑1 (MQ=255)

                                                                               gATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGc          >  1:3462056/1‑93 (MQ=255)

                                                                               gATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGc          <  2:1449558/93‑1 (MQ=255)

                                                                                aTACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCt         <  2:2062382/93‑1 (MQ=255)

                                                                                aTACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCt         <  1:1974056/93‑1 (MQ=255)

                                                                                  aCCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGt       <  1:1637965/93‑1 (MQ=255)

                                                                                   cccAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTa      <  1:2673669/93‑1 (MQ=255)

                                                                                    ccAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTag     >  2:3102404/1‑93 (MQ=255)

                                                                                    ccAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTag     <  1:4081304/93‑1 (MQ=255)

                                                                                     cAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTaga    <  2:383834/93‑1 (MQ=255)

                                                                                      aaTCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTagag   >  1:5198523/1‑93 (MQ=255)

                                                                                       aTCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAgg  <  2:3608908/93‑1 (MQ=255)

TTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCTCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGG  >  NC_000913/2997887‑2998066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`