BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	332,530	T→C	P312P (CCT→CCC)	yahA →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	332,530	0	T	C	100.0%	761.0 / NA	236	P312P (CCT→CCC)	yahA	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (120/116); total (120/116)

Only 100 of 242 total aligned reads displayed.

TAAGATCGATAAGTCATTTGTGCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCTGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACTTTTTGCAGGGCTATTT  >  NC_000913/332440‑332619

taAGATCGATAAGTCATTTGTGCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCgg                                                                                         <  2:6167038/93‑1 (MQ=255)

     tCGATAAGTCATTTGTGCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGa                                                                                    >  1:5857295/1‑93 (MQ=255)

       gATAAGTCATTTGTGCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGt                                                                                  <  2:3339109/93‑1 (MQ=255)

       gATAAGTCATTTGTGCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGt                                                                                  >  2:4474770/1‑93 (MQ=255)

         tAAGTCATTTGTGCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTAt                                                                                >  1:5491106/1‑93 (MQ=255)

         tAAGTCATTTGTGCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTAt                                                                                >  1:4536173/1‑93 (MQ=255)

         tAAGTCATTTGTGCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTAt                                                                                <  1:4065436/93‑1 (MQ=255)

         tAAGTCATTTGTGCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTAt                                                                                >  2:5914573/1‑93 (MQ=255)

         tAAGTCATTTGTGCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTAt                                                                                >  2:1677512/1‑93 (MQ=255)

         tAAGTCATTTGTGCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTAt                                                                                >  2:2634930/1‑93 (MQ=255)

          aaGTCATTTGTGCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATc                                                                               >  2:3444767/1‑93 (MQ=255)

            gTCATTTGTGCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGt                                                                             >  1:1923673/1‑93 (MQ=255)

             tCATTTGTGCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTg                                                                            >  1:1368240/1‑93 (MQ=255)

                 ttGTGCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCgg                                                                        <  2:1891009/93‑1 (MQ=255)

                  tgtgCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGa                                                                       >  2:2368627/1‑93 (MQ=255)

                   gtgCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGaa                                                                      <  2:4327087/93‑1 (MQ=255)

                    tgCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAg                                                                     >  2:2838529/1‑93 (MQ=255)

                    tgCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAg                                                                     >  1:2874025/1‑93 (MQ=255)

                     gCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAgg                                                                    <  1:907156/93‑1 (MQ=255)

                     gCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAgg                                                                    <  2:871183/93‑1 (MQ=255)

                       aaaTGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAgggg                                                                  <  2:4408480/93‑1 (MQ=255)

                       aaaTGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAgggg                                                                  <  1:5075859/93‑1 (MQ=255)

                        aaTGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAggggg                                                                 >  2:2757569/1‑92 (MQ=255)

                         aTGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTa                                                                >  1:4462916/1‑93 (MQ=255)

                         aTGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTa                                                                <  1:1756418/93‑1 (MQ=255)

                              gAGGGTCTACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAAc                                                           >  2:796276/1‑93 (MQ=255)

                               aGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAAcc                                                          <  1:1544551/93‑1 (MQ=255)

                                   tCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAgg                                                      >  2:3084861/1‑93 (MQ=255)

                                   tCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAgg                                                      >  2:3587578/1‑93 (MQ=255)

                                    cgacgaAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGa                                                     <  1:6071287/93‑1 (MQ=255)

                                    cgacgaAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGa                                                     <  2:3641917/93‑1 (MQ=255)

                                    cgacgaAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGa                                                     <  1:5195493/93‑1 (MQ=255)

                                     gacgaAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAg                                                    >  1:395095/1‑93 (MQ=255)

                                     gacgaAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAg                                                    >  1:939102/1‑93 (MQ=255)

                                      acgaAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGc                                                   <  2:316864/93‑1 (MQ=255)

                                      acgaAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGGAGAAACCCAGGAGc                                                   >  1:533297/1‑93 (MQ=255)

                                       cgaAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCa                                                  <  2:5977388/93‑1 (MQ=255)

                                        gaAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAg                                                 >  1:5601289/1‑93 (MQ=255)

                                        gaAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAg                                                 >  1:2716362/1‑93 (MQ=255)

                                        gaAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCACGAGCAg                                                 <  2:5242211/93‑1 (MQ=255)

                                         aaaTCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAgg                                                >  1:2229109/1‑93 (MQ=255)

                                         aaaTCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAgg                                                >  1:80654/1‑93 (MQ=255)

                                         aaaTCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAgg                                                >  2:1103884/1‑93 (MQ=255)

                                          aaTCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGc                                               <  1:4927304/93‑1 (MQ=255)

                                          aaTCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGc                                               >  2:4260388/1‑93 (MQ=255)

                                          aaTCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGc                                               <  2:3032996/93‑1 (MQ=255)

                                          aaTCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGc                                               <  2:593805/93‑1 (MQ=255)

                                           aTCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAATCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCg                                              <  1:6053450/93‑1 (MQ=255)

                                           aTCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCg                                              >  2:1965415/1‑93 (MQ=255)

                                           aTCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCg                                              >  1:267583/1‑93 (MQ=255)

                                               ccGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGAtt                                          <  2:510452/93‑1 (MQ=255)

                                                 ggTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTa                                        <  2:4937301/93‑1 (MQ=255)

                                                   tCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAAt                                      <  1:1190310/93‑1 (MQ=255)

                                                   tCATACTGTGGACAATATTGTCGAACTAGCGCGTAAGTCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAAt                                      >  2:5546923/1‑93 (MQ=255)

                                                    cATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATg                                     <  2:2928494/93‑1 (MQ=255)

                                                    cATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATg                                     <  2:929170/93‑1 (MQ=255)

                                                    cATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATg                                     >  1:79059/1‑93 (MQ=255)

                                                     atatTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGa                                    >  2:1598403/1‑93 (MQ=255)

                                                     atatTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGa                                    >  1:4375807/1‑93 (MQ=255)

                                                     atatTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGa                                    >  2:4127731/1‑93 (MQ=255)

                                                     atatTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGa                                    <  2:4610482/93‑1 (MQ=255)

                                                      tatTGTGGCCAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGAt                                   >  2:6139826/1‑93 (MQ=255)

                                                      tatTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGAt                                   <  1:1206744/93‑1 (MQ=255)

                                                      tatTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGAt                                   <  1:3691874/93‑1 (MQ=255)

                                                      tatTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGAt                                   >  1:5400351/1‑93 (MQ=255)

                                                      tatTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGAt                                   <  1:5803051/93‑1 (MQ=255)

                                                      tatTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGAt                                   >  2:5222801/1‑93 (MQ=255)

                                                       atTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATc                                  <  2:700999/93‑1 (MQ=255)

                                                       atTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATc                                  <  2:1385481/93‑1 (MQ=255)

                                                       atTGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGCAGCAGGCGGCTTTAATGATc                                  >  1:461362/1‑93 (MQ=255)

                                                        ttGTGGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCg                                 >  1:3329366/1‑93 (MQ=255)

                                                          gtgGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGt                               >  2:354955/1‑93 (MQ=255)

                                                           tgGACAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTa                              <  1:1397825/93‑1 (MQ=255)

                                                              aCAATATTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAg                           >  2:5853602/1‑93 (MQ=255)

                                                                 atatTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCg                        >  2:3735644/1‑93 (MQ=255)

                                                                  tatTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGt                       <  1:4214237/93‑1 (MQ=255)

                                                                  tatTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGt                       <  2:12885/93‑1 (MQ=255)

                                                                   atTGTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAggggat                      >  1:1899141/1‑89 (MQ=255)

                                                                      gTCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCAc                   <  2:6297071/93‑1 (MQ=255)

                                                                       tCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACt                  <  2:4848592/93‑1 (MQ=255)

                                                                       tCGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACt                  >  1:6117263/1‑93 (MQ=255)

                                                                        cGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACtt                 <  2:3949715/93‑1 (MQ=255)

                                                                        cGAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACtt                 <  2:5646470/93‑1 (MQ=255)

                                                                         gAACTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACttt                >  1:3521628/1‑93 (MQ=255)

                                                                          aaCTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACtttt               <  2:3835482/93‑1 (MQ=255)

                                                                          aaCTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACtttt               <  1:2578689/93‑1 (MQ=255)

                                                                          aaCTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACtttt               >  2:133747/1‑93 (MQ=255)

                                                                          aaCTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACtttt               <  1:2285266/93‑1 (MQ=255)

                                                                            cTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACTTTTTg             >  1:3772027/1‑93 (MQ=255)

                                                                            cTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATAGGTAAAGGCGTTCACTTTTTg             >  1:644248/1‑93 (MQ=255)

                                                                            cTAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGGAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACTTTTTg             >  2:5438913/1‑93 (MQ=255)

                                                                             tAGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACTTTTTGc            >  1:1857518/1‑93 (MQ=255)

                                                                              aGCGCGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACTTTTTGCa           <  2:5799041/93‑1 (MQ=255)

                                                                               gcgcGTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACTTTTTGCAg          <  2:5732721/93‑1 (MQ=255)

                                                                                cgcgTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACTTTTTGCAgg         <  2:1762292/93‑1 (MQ=255)

                                                                                 gcgTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACTTTTTGCAggg        >  1:1081596/1‑93 (MQ=255)

                                                                                  cgTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACTTTTTGCAGGGc       <  1:3211705/93‑1 (MQ=255)

                                                                                   gTAAGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACTTTTTGCAGGGCt      >  1:5432416/1‑93 (MQ=255)

                                                                                     aaGCCCGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACTTTTTGCAGGGCTAt    >  1:2399618/1‑93 (MQ=255)

                                                                                     aaGCCCGGTCTGAGTATCGTGGCGGAAGGCGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACTTTTTGCAGGGCTAt    <  2:21625/93‑1 (MQ=255)

TAAGATCGATAAGTCATTTGTGCAAATGGCGAGTGTCGACGAAATCTCCGGTCATATTGTGGACAATATTGTCGAACTAGCGCGTAAGCCTGGTCTGAGTATCGTGGCGGAAGGGGTAGAAACCCAGGAGCAGGCGGATTTAATGATCGGTAAAGGCGTTCACTTTTTGCAGGGCTATTT  >  NC_000913/332440‑332619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`