BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,211,779	T→C	R364R (CGT→CGC)	rpoD →	RNA polymerase sigma(70)

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,211,779	0	T	C	100.0%	905.7 / NA	279	R364R (CGT→CGC)	rpoD	RNA polymerase sigma(70)
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (143/136); total (143/136)

Only 100 of 291 total aligned reads displayed.

TGAAGAAGTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGTATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAGAAATA  >  NC_000913/3211689‑3211868

tGAAGAAGTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCAt                                                                                         >  1:1224305/1‑93 (MQ=255)

tGAAGAAGTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCAt                                                                                         >  2:3652757/1‑93 (MQ=255)

tGAAGAAGTGCATCGCGCCCTGCAAAAACTGCAGCAGAGTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATAGCAACCGTCGCAt                                                                                         <  2:5292522/93‑1 (MQ=255)

 gaagaaGTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATg                                                                                        >  2:1909989/1‑93 (MQ=255)

   agaagTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTc                                                                                      <  1:2651615/93‑1 (MQ=255)

    gaagTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTcc                                                                                     >  2:1929525/1‑93 (MQ=255)

    gaagTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTcc                                                                                     >  2:299865/1‑93 (MQ=255)

     aagTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCa                                                                                    <  2:869282/93‑1 (MQ=255)

     aagTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCa                                                                                    >  2:1391798/1‑93 (MQ=255)

       gTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATc                                                                                  >  1:5535172/1‑93 (MQ=255)

       gTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATc                                                                                  >  2:4763625/1‑93 (MQ=255)

        tGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCg                                                                                 >  2:1539161/1‑93 (MQ=255)

         gCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCgg                                                                                >  2:5501629/1‑93 (MQ=255)

           aTCGCGCCCTGCAAAAACTGCAGCGGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTg                                                                              >  2:738883/1‑93 (MQ=255)

           aTCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTg                                                                              >  1:1531739/1‑93 (MQ=255)

           aTCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTg                                                                              >  2:5422569/1‑93 (MQ=255)

              gcgcCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAg                                                                           >  1:597692/1‑93 (MQ=255)

              gcgcCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAg                                                                           <  1:1902136/93‑1 (MQ=255)

              gcgcCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAg                                                                           <  2:1597461/93‑1 (MQ=255)

                 cccTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGa                                                                        >  1:1055889/1‑93 (MQ=255)

                 cccTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGa                                                                        >  2:369990/1‑93 (MQ=255)

                 cccTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGa                                                                        >  1:3658353/1‑93 (MQ=255)

                 cccTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGa                                                                        >  1:1288519/1‑93 (MQ=255)

                  ccTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCgca                                                                       >  1:793736/1‑91 (MQ=255)

                   cTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGaaa                                                                      >  1:5368090/1‑93 (MQ=255)

                    tGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTACATCGGTGAAGCGAAAg                                                                     >  1:2883995/1‑93 (MQ=255)

                     gCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGc                                                                    >  1:5642366/1‑93 (MQ=255)

                      cAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGcc                                                                   <  1:2065182/93‑1 (MQ=255)

                      cAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGcc                                                                   <  1:4313689/93‑1 (MQ=255)

                      cAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGcc                                                                   <  2:1775011/93‑1 (MQ=255)

                       aaaaaCTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGccc                                                                  >  1:5317073/1‑93 (MQ=255)

                       aaaaaCTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGccc                                                                  <  2:5841943/93‑1 (MQ=255)

                        aaaaCTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCccg                                                                 <  1:4253827/93‑1 (MQ=255)

                         aaaCTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCccgc                                                                >  1:1545878/1‑93 (MQ=255)

                         aaaCTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCccgc                                                                <  1:4000947/93‑1 (MQ=255)

                             tGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTg                                                            >  1:4468902/1‑93 (MQ=255)

                             tGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTg                                                            >  1:3498661/1‑93 (MQ=255)

                              gcagcaGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGc                                                           >  1:1784826/1‑93 (MQ=255)

                                agcagATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCga                                                         >  2:3542483/1‑93 (MQ=255)

                                     aTTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGaagaaa                                                    <  2:6087338/93‑1 (MQ=255)

                                     aTTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGaagaaa                                                    >  1:3781768/1‑93 (MQ=255)

                                      ttGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGaagaaag                                                   <  2:5627255/93‑1 (MQ=255)

                                       tGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGaagaaaga                                                  <  1:4846403/93‑1 (MQ=255)

                                       tGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGACCGCCGTGCGaagaaaga                                                  >  2:5815488/1‑93 (MQ=255)

                                         aagaagaaACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAgaga                                                <  1:2977873/93‑1 (MQ=255)

                                          agaagaaACCGGCCTGACCATCGAGCAGGTTAAAGATATCACCCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGAt                                               <  2:3298720/93‑1 (MQ=255)

                                          agaagaaACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGAt                                               <  1:4784717/93‑1 (MQ=255)

                                          agaagaaACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGAt                                               <  2:5307567/93‑1 (MQ=255)

                                            aagaaACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATgg                                             <  1:5800072/93‑1 (MQ=255)

                                            aagaaACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATgg                                             <  2:3962355/93‑1 (MQ=255)

                                             agaaACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGt                                            <  2:281229/93‑1 (MQ=255)

                                             agaaACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAACAGATGGt                                            <  2:5986490/93‑1 (MQ=255)

                                              gaaACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGtt                                           >  1:2257368/1‑93 (MQ=255)

                                                 aCCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGaa                                        >  2:314291/1‑93 (MQ=255)

                                                 aCCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGaa                                        <  2:1002223/93‑1 (MQ=255)

                                                  ccGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAg                                       >  1:6165558/1‑93 (MQ=255)

                                                  ccGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAg                                       <  2:1303601/93‑1 (MQ=255)

                                                   cGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGc                                      >  1:6235924/1‑93 (MQ=255)

                                                   cGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGc                                      <  1:3893525/93‑1 (MQ=255)

                                                    ggCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCg                                     <  2:3609537/93‑1 (MQ=255)

                                                     gCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGa                                    >  2:5152862/1‑93 (MQ=255)

                                                      ccTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGaa                                   >  2:4254412/1‑93 (MQ=255)

                                                       cTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAAc                                  <  2:1327912/93‑1 (MQ=255)

                                                       cTGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAAc                                  <  1:2808973/93‑1 (MQ=255)

                                                        tGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACt                                 >  2:625287/1‑93 (MQ=255)

                                                        tGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACt                                 >  2:4468405/1‑93 (MQ=255)

                                                        tGACCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACt                                 <  2:4817677/93‑1 (MQ=255)

                                                          aCCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTa                               <  2:2263058/93‑1 (MQ=255)

                                                          aCCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTa                               >  1:1653135/1‑93 (MQ=255)

                                                          aCCATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTa                               <  1:906227/93‑1 (MQ=255)

                                                           ccATCGAGCAGGTTAAAGATATCACCCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTAc                              <  1:5491373/93‑1 (MQ=255)

                                                           ccATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTAc                              <  1:1812961/93‑1 (MQ=255)

                                                           ccATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTAc                              <  2:437788/93‑1 (MQ=255)

                                                           ccATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTAc                              <  1:3166929/93‑1 (MQ=255)

                                                           ccATCGAGCAGGTTAAAGATAGCAACCGGCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTAc                              <  1:2536419/93‑1 (MQ=255)

                                                            cATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACg                             <  2:3429019/93‑1 (MQ=255)

                                                            cATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACg                             >  2:236676/1‑93 (MQ=255)

                                                            cATCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACg                             <  2:2185041/93‑1 (MQ=255)

                                                             aTCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGt                            <  1:3253508/93‑1 (MQ=255)

                                                              tCGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTc                           >  1:3094989/1‑93 (MQ=255)

                                                               cGAGCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCt                          <  1:1515292/93‑1 (MQ=255)

                                                                  gCAGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGt                       >  1:2136378/1‑93 (MQ=255)

                                                                    aGGTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTa                     >  1:3351434/1‑93 (MQ=255)

                                                                     ggTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTAt                    >  2:5673865/1‑93 (MQ=255)

                                                                      gTTAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTAtt                   <  1:2473842/93‑1 (MQ=255)

                                                                        tAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTc                 >  1:1033802/1‑93 (MQ=255)

                                                                        tAAAGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTc                 <  2:2582145/93‑1 (MQ=255)

                                                                         aaaGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAACGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCt                >  1:1981236/1‑93 (MQ=255)

                                                                         aaaGATATCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCt                <  1:2832472/93‑1 (MQ=255)

                                                                             atatCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCg            >  1:5458975/1‑93 (MQ=255)

                                                                              tatCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGc           >  2:2060969/1‑93 (MQ=255)

                                                                              tatCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGc           <  1:5053180/93‑1 (MQ=255)

                                                                                tCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTa         <  2:2483503/93‑1 (MQ=255)

                                                                                tCAACCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTa         >  2:5873566/1‑93 (MQ=255)

                                                                                  aaCCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAg       >  1:4641824/1‑93 (MQ=255)

                                                                                   aCCGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAGa      >  1:4211555/1‑93 (MQ=255)

                                                                                    ccGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAGaa     <  1:1401880/93‑1 (MQ=255)

                                                                                    ccGTCGCATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAGaa     >  2:3786595/1‑93 (MQ=255)

                                                                                      gtcgcATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAGAAAt   >  1:453276/1‑93 (MQ=255)

                                                                                       tcgcATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAGAAATa  <  2:11925/93‑1 (MQ=255)

TGAAGAAGTGCATCGCGCCCTGCAAAAACTGCAGCAGATTGAAGAAGAAACCGGCCTGACCATCGAGCAGGTTAAAGATATCAACCGTCGTATGTCCATCGGTGAAGCGAAAGCCCGCCGTGCGAAGAAAGAGATGGTTGAAGCGAACTTACGTCTGGTTATTTCTATCGCTAAGAAATA  >  NC_000913/3211689‑3211868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`