| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,957,548 | 1 bp→GG | intergenic (‑117/‑744) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,957,547 | 1 | . | G | 94.2% | 1219.2 / 55.2 | 330 | intergenic (‑116/‑745) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base . (12/7); new base G (103/208); total (115/215) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.17e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.69e-02 | |||||||||||
| * | NC_000913 | 3,957,548 | 0 | T | G | 99.7% | 1287.0 / NA | 331 | intergenic (‑117/‑744) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base G (114/216); total (115/216) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 366 total aligned reads displayed.
TGTCAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑T‑G‑‑C‑‑TCGCA‑GGT‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATT > NC_000913/3957454‑3957632 ||| tGTCAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTGCATATATTGCAAAAGCCCGGAAAAT‑CC‑T‑g > 1:5795483/1‑96 (MQ=255) ttttAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTTCATATATGGCAAAAGACCGGGAAAT‑CCGG‑G‑‑CG‑TCGCA‑GGT‑c‑c > 2:4450395/1‑96 (MQ=255) ttttAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGGAAAAGCCCGGAAAAT‑CC‑TGG‑‑CT‑TCGCA‑GGT‑c‑c > 2:1123566/1‑96 (MQ=255) ttttAGCAGGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGT‑c‑c < 2:6380841/96‑1 (MQ=255) tttAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGGAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGT‑c‑cc > 2:6135437/1‑95 (MQ=255) ttAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGT‑c‑cct > 2:7806618/1‑94 (MQ=255) tAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGT‑c‑cctc < 2:12565882/96‑4 (MQ=255) tAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGT‑c‑cctc < 2:10792192/96‑4 (MQ=255) tAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGT‑c‑cctc < 2:906366/96‑4 (MQ=255) tAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGT‑c‑cctc < 1:13511849/96‑4 (MQ=255) tAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGACCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGT‑c‑cctc > 1:1007390/1‑93 (MQ=255) aGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGT‑c‑cctca < 2:6929436/96‑5 (MQ=255) cATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAg < 1:11921447/96‑1 (MQ=255) tGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAggg > 2:7524271/1‑96 (MQ=255) ggATCCGCAGATGCTAGCGTACATGTCAGTCAGGGAGTGGCTGGTACATATATGGCACAAGCCCTGAAAAT‑CC‑G‑G‑‑CATTCGCA‑GGTCC‑CTCAAggg < 1:5345151/95‑1 (MQ=255) gATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAgggg > 2:13134253/1‑96 (MQ=255) aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAACCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCAGGGC‑C‑CTCAAGGGga > 1:5436625/1‑96 (MQ=255) ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGgaga < 1:9600010/96‑1 (MQ=255) gCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGaaa < 2:13874764/96‑1 (MQ=255) gCAGATGCTAACGAAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCC‑G‑G‑‑CT‑TCGCA‑GGTCC‑CCCCAGGGGAGaaa > 2:8411741/1‑96 (MQ=255) aGATGCTAACGTAATTGTCAGTCAGGGAGTTGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAAc < 2:11664560/96‑1 (MQ=255) aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAAc < 2:10950167/96‑1 (MQ=255) taTGCTAACGTAAATGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCC‑GGTCC‑CTCAAGGGGGGAAAACt > 1:13887132/2‑96 (MQ=255) gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACt < 2:5573638/96‑1 (MQ=255) aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACtg < 1:11290610/96‑2 (MQ=255) tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCCAGGGGAGCAAACCTa > 1:2780355/1‑96 (MQ=255) cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAgg < 2:11471210/96‑1 (MQ=255) cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAgg > 1:12488161/1‑96 (MQ=255) cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCACGGAAAAT‑CC‑G‑GGTT‑‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAgg < 2:5289619/96‑1 (MQ=255) tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAggg > 1:1696910/1‑96 (MQ=255) tAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAggg > 2:5991274/1‑96 (MQ=255) aaCGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TGGCA‑GGT‑CGCTCAAGGGGAGAAAACTTAGGGc > 2:12683746/1‑96 (MQ=255) cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCct > 1:12940359/1‑96 (MQ=255) gTAATTGTCAGTCAGGGAGTGGTTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCctc < 1:6927564/96‑1 (MQ=255) gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCctc > 1:1093391/1‑96 (MQ=255) gTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCctc > 1:1814160/1‑96 (MQ=255) tAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCctct > 2:4192946/1‑96 (MQ=255) aaTTGTCAGTCAGGGAGTGGCTGGTACCTATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCCAGGGGAGAAAAATTAGGGCCTCTa > 1:11186625/1‑96 (MQ=255) aaTTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTa > 1:941969/1‑96 (MQ=255) aaTTGTCAGTCAGGGAGTGGCTGGCACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:4631894/96‑1 (MQ=255) aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGGAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTAt > 2:11789752/1‑96 (MQ=255) aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTAt < 1:9161936/96‑1 (MQ=255) aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAACCCGGAAAAA‑CCGG‑G‑‑CT‑TCGCAGGGC‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTAt > 1:8491793/1‑96 (MQ=255) tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATgg < 1:13598148/96‑1 (MQ=255) tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATgg < 1:6226725/96‑1 (MQ=255) gtgagtcagGTAGTGGCTGGTACTTATATGGCAAAAGCACGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATggg < 1:219166/93‑1 (MQ=255) gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATggg > 2:7166103/1‑96 (MQ=255) tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc < 1:13224112/96‑1 (MQ=255) tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc > 2:9291577/1‑96 (MQ=255) cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCAGGGC‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt > 1:3811850/1‑96 (MQ=255) cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCCAGGGGAGAAAACTTAGGGCCTCTATGGGCt > 2:13555465/1‑96 (MQ=255) attcagGGATAGGCTGGTGCATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa < 2:10736029/94‑1 (MQ=255) gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGTTAc < 2:10117206/96‑1 (MQ=255) tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa < 2:6688139/96‑1 (MQ=255) cagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa < 1:8744974/96‑1 (MQ=255) cagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa > 2:11305315/1‑96 (MQ=255) agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa < 2:3770636/96‑1 (MQ=255) ggAGTGGCTGGTACATATATGGCAAAAGCCCGGGAAATCCC‑G‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAgg > 2:12340994/1‑95 (MQ=255) gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc > 2:3322473/1‑96 (MQ=255) gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc < 1:12232681/96‑1 (MQ=255) gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑GGG‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAggc < 1:7524271/96‑3 (MQ=255) aGTGGCTGGTACATATATGTCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 1:4496507/96‑1 (MQ=255) aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACCAAGTCa > 1:7149968/1‑96 (MQ=255) aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 1:14362567/96‑1 (MQ=255) tGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt < 2:11889953/96‑1 (MQ=255) tGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑GGG‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt < 2:6515775/96‑1 (MQ=255) ggCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa > 2:14240983/1‑96 (MQ=255) ggCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGACTCTATGGGCTACAAAGTCATTa > 2:278540/1‑96 (MQ=255) ggCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGCAGAAAACTTAGGGCCTCTATCGGCTACAAAGTCACTa > 1:13838682/1‑96 (MQ=255) gCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 1:4159686/96‑1 (MQ=255) cTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTagc < 1:11830517/96‑3 (MQ=255) cTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 1:11552940/96‑1 (MQ=255) tGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg > 2:5893996/1‑96 (MQ=255) gTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg < 1:7700911/96‑1 (MQ=255) gTACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg < 2:11572442/96‑1 (MQ=255) tACATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg < 1:3325854/96‑1 (MQ=255) aCATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa > 2:5409527/1‑96 (MQ=255) cATATATGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 2:1964129/96‑1 (MQ=255) atatatGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg < 2:7470129/96‑1 (MQ=255) tatatGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg < 2:12928709/96‑1 (MQ=255) ctatGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt < 1:350963/95‑1 (MQ=255) atatGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt > 2:9641887/1‑96 (MQ=255) atGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta < 2:8213420/96‑1 (MQ=255) atGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta < 2:695480/96‑1 (MQ=255) atGGCAAAAGCCCGGAAAAT‑CC‑GGG‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta > 1:8267264/1‑96 (MQ=255) tGGCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat < 1:598104/96‑1 (MQ=255) ggCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt < 2:3596404/96‑1 (MQ=255) ggCAAAAGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt < 2:1944487/96‑1 (MQ=255) aaaaGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGATAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGgtatttaa > 1:10557638/1‑94 (MQ=255) aaaaGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta > 1:8947587/1‑96 (MQ=255) aaaaGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta > 2:1562028/1‑96 (MQ=255) aaaaGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta < 2:2130746/96‑1 (MQ=255) aaaaGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta < 1:4978887/96‑1 (MQ=255) aaaaGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta < 2:6026822/96‑1 (MQ=255) aaGCCCGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt < 2:14152438/96‑1 (MQ=255) cccGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTc < 1:3121340/96‑1 (MQ=255) ccGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCa < 1:3383610/96‑1 (MQ=255) cGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCaa < 2:878115/96‑1 (MQ=255) cGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCa > 2:2483130/1‑95 (MQ=255) cGGAAAAT‑CCGG‑G‑‑CT‑TCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCa < 1:2483130/95‑1 (MQ=255) ||| TGTCAGGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑T‑G‑‑C‑‑TCGCA‑GGT‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATT > NC_000913/3957454‑3957632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |