Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,077,640 +G intergenic (‑291/+23) cmtB ← / ← tktA PTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,077,6401.G100.0% 772.9 / NA 223intergenic (‑291/+23)cmtB/tktAPTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (162/61);  total (162/61)

Only 100 of 248 total aligned reads displayed.

TATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GC‑ACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAACAGC  >  NC_000913/3077548‑3077726
                                                                                              |                                                                                      
tattGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑Gc                                                                                         >  1:2075489/1‑93 (MQ=255)
  ttGCATATAAATATTTGTGATCTATAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑Gcgc                                                                                       >  1:146460/1‑91 (MQ=255)
  ttGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑Gcga                                                                                       >  2:407954/1‑91 (MQ=255)
   tGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑Gcgac                                                                                      <  1:1083895/93‑4 (MQ=255)
   tGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑Gcgac                                                                                      <  1:5906051/93‑4 (MQ=255)
    gCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑Gcgacc                                                                                     >  2:746350/1‑89 (MQ=255)
      atatAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCtt                                                                                   >  1:4729705/1‑93 (MQ=255)
      atatAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCtt                                                                                   >  1:3703563/1‑93 (MQ=255)
       tataAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCttt                                                                                  >  1:8547278/1‑93 (MQ=255)
       tataAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCttt                                                                                  >  2:4703262/1‑93 (MQ=255)
       tataAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCttt                                                                                  >  1:7099640/1‑93 (MQ=255)
        ataAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCtttt                                                                                 >  1:2600495/1‑93 (MQ=255)
         taAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCttttt                                                                                >  2:6397530/1‑93 (MQ=255)
         taAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCttttt                                                                                >  2:165003/1‑93 (MQ=255)
          aaaTATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATTTCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTa                                                                               >  2:6194450/1‑93 (MQ=255)
            atatTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTAcc                                                                             >  2:1344962/1‑93 (MQ=255)
            atatTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTAcc                                                                             >  2:6762285/1‑93 (MQ=255)
            atatTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTAcc                                                                             >  1:1535601/1‑93 (MQ=255)
             tatTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTAccc                                                                            >  2:7273027/1‑93 (MQ=255)
             tatTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTAccc                                                                            <  1:3934531/93‑1 (MQ=255)
             tatTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTAccc                                                                            >  1:598581/1‑93 (MQ=255)
             tatTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTAccc                                                                            >  2:5676808/1‑93 (MQ=255)
               tttGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGa                                                                          >  1:7394151/1‑93 (MQ=255)
                ttGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGaa                                                                         >  1:21385/1‑93 (MQ=255)
                 tgtgATCCACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGaaa                                                                        <  1:7536734/93‑1 (MQ=255)
                  gtgATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAAt                                                                       >  1:1000480/1‑93 (MQ=255)
                   tgATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATg                                                                      >  1:7797459/1‑93 (MQ=255)
                      tCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTa                                                                   >  2:7169599/1‑93 (MQ=255)
                      tCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTa                                                                   >  2:2691594/1‑93 (MQ=255)
                      tCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTa                                                                   >  2:4823386/1‑93 (MQ=255)
                        tACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAAt                                                                 >  1:8585999/1‑93 (MQ=255)
                         acaacaCGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAAtt                                                                >  1:847395/1‑93 (MQ=255)
                         acaacaCGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAAtt                                                                <  1:4546891/93‑1 (MQ=255)
                          caacaCGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTa                                                               <  2:818038/93‑1 (MQ=255)
                            acacGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTAca                                                             >  2:1969332/1‑93 (MQ=255)
                             cacGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTAcag                                                            >  1:7483265/1‑93 (MQ=255)
                              acGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTAcagc                                                           <  2:7688548/93‑1 (MQ=255)
                               cGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTAcagca                                                          <  1:412235/93‑1 (MQ=255)
                                 ccTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGt                                                        <  2:827693/93‑1 (MQ=255)
                                 ccTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGt                                                        >  1:8225934/1‑93 (MQ=255)
                                 ccTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGt                                                        >  1:3876442/1‑93 (MQ=255)
                                 ccTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGt                                                        >  1:464267/1‑93 (MQ=255)
                                 ccTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGt                                                        <  2:2774754/93‑1 (MQ=255)
                                 ccTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGt                                                        >  1:2572912/1‑93 (MQ=255)
                                  cTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGtt                                                       >  2:2117902/1‑93 (MQ=255)
                                  cTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGtt                                                       >  2:3974222/1‑93 (MQ=255)
                                  cTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGtt                                                       >  2:4307036/1‑93 (MQ=255)
                                  cTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGtt                                                       >  1:3048487/1‑93 (MQ=255)
                                  cTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGtt                                                       >  1:8709275/1‑93 (MQ=255)
                                    tATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCt                                                     <  2:3227788/93‑1 (MQ=255)
                                    tATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCt                                                     >  1:5179100/1‑93 (MQ=255)
                                      tCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCttt                                                   >  1:4255963/1‑93 (MQ=255)
                                      tCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCttt                                                   <  1:7943492/93‑1 (MQ=255)
                                      tCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCttt                                                   >  2:7926648/1‑93 (MQ=255)
                                        tATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTg                                                 >  1:5661495/1‑93 (MQ=255)
                                        tATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTg                                                 >  2:4132952/1‑93 (MQ=255)
                                         aTTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGc                                                >  2:4195978/1‑93 (MQ=255)
                                          ttGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCt                                               >  1:1376530/1‑93 (MQ=255)
                                             cTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTc                                            >  1:3999845/1‑93 (MQ=255)
                                                 tCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGcaa                                        >  2:690148/1‑93 (MQ=255)
                                                  ccGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGcaac                                       >  1:3249004/1‑93 (MQ=255)
                                                  ccGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGcaac                                       <  2:3763180/93‑1 (MQ=255)
                                                     cAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCaacaac                                    >  2:7354045/1‑93 (MQ=255)
                                                      aaaCGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACg                                   >  2:5023746/1‑93 (MQ=255)
                                                       aaCGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGt                                  >  2:5406900/1‑93 (MQ=255)
                                                       aaCGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGt                                  >  2:49665/1‑93 (MQ=255)
                                                         cGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTa                                >  1:6680083/1‑93 (MQ=255)
                                                         cGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTa                                >  2:5711733/1‑93 (MQ=255)
                                                           gACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATc                              >  1:4321338/1‑93 (MQ=255)
                                                            aCATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCa                             >  1:1746505/1‑93 (MQ=255)
                                                             cATATCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCaa                            <  2:4398738/93‑1 (MQ=255)
                                                             cATATCAAGGTAATAAAAAAGGGCGGCGAAGGG‑ACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAAGCACGTTATCaa                            >  2:5210149/1‑93 (MQ=255)
                                                              atatCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAAc                           >  2:1595513/1‑93 (MQ=255)
                                                                atCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAg                         >  2:4563523/1‑93 (MQ=255)
                                                                atCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAg                         <  2:7889419/93‑1 (MQ=255)
                                                                 tCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGt                        <  1:3432592/93‑1 (MQ=255)
                                                                 tCAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGt                        <  2:2402596/93‑1 (MQ=255)
                                                                  cAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTg                       <  1:6994239/93‑1 (MQ=255)
                                                                  cAAGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTg                       >  1:6182111/1‑93 (MQ=255)
                                                                   aaGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGa                      >  2:3539428/1‑93 (MQ=255)
                                                                   aaGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGa                      >  1:1655230/1‑93 (MQ=255)
                                                                    aGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGaa                     >  1:1163734/1‑93 (MQ=255)
                                                                    aGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGaa                     >  1:5494691/1‑93 (MQ=255)
                                                                    aGGTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGaa                     <  1:284399/93‑1 (MQ=255)
                                                                     ggTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAg                    <  2:1254463/93‑1 (MQ=255)
                                                                      gTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGc                   >  1:963875/1‑93 (MQ=255)
                                                                      gTAATAAAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGc                   >  2:6940061/1‑93 (MQ=255)
                                                                         ataaAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGa                >  1:6399529/1‑93 (MQ=255)
                                                                         ataaAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGa                >  1:8326221/1‑93 (MQ=255)
                                                                         ataaAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGa                >  1:3565544/1‑93 (MQ=255)
                                                                          taaAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGaa               <  2:5860097/93‑1 (MQ=255)
                                                                          taaAAAAGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGaa               >  2:1428284/1‑93 (MQ=255)
                                                                              aaaGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAActct           >  2:5783068/1‑93 (MQ=255)
                                                                               aaGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCGACAACGTTATCAACAGTGAAGCCGAACTCtt          >  1:1628170/1‑93 (MQ=255)
                                                                               aaGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCtt          >  1:5162384/1‑93 (MQ=255)
                                                                               aaGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCtt          >  1:6696383/1‑93 (MQ=255)
                                                                                aGGTCGCCGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTc         <  1:8788800/93‑1 (MQ=255)
                                                                                      ccGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAAcag   >  2:1082696/1‑93 (MQ=255)
                                                                                      ccGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAAcag   >  2:3253053/1‑93 (MQ=255)
                                                                                       cGAA‑GCGACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAAcagc  >  1:7219220/1‑93 (MQ=255)
                                                                                              |                                                                                      
TATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAA‑GC‑ACCTTTTTACCCGAAATGCTAATTACAGCAGTTCTTTTGCTTTCGCAACAACGTTATCAACAGTGAAGCCGAACTCTTCAAACAGC  >  NC_000913/3077548‑3077726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑