| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,957,092 | +CC | intergenic (+26/+58) | ilvC → / ← ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,957,091 | 1 | . | C | 94.0% | 735.5 / 45.6 | 284 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (1/16); new base C (26/241); total (27/257) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
| * | NC_000913 | 3,957,091 | 2 | . | C | 94.0% | 732.1 / 45.6 | 284 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (1/16); new base C (26/241); total (27/257) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 325 total aligned reads displayed.
TTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑A‑‑C‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3956999‑3957173 || ttGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑a < 2:416138/93‑1 (MQ=255) aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑A‑‑ccc > 1:2276808/1‑91 (MQ=255) aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑A‑‑ccc < 2:3396574/93‑3 (MQ=255) cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑A‑‑C‑‑c‑‑ctc < 2:6233183/93‑1 (MQ=255) ggtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCG‑‑‑C‑‑C‑‑c‑‑ctctc > 1:2733040/1‑91 (MQ=39) ggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCcac < 1:5826047/93‑1 (MQ=38) gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCcaca < 1:1461405/93‑1 (MQ=38) gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCcaca < 2:5457041/93‑1 (MQ=38) taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCGCCCCG‑‑‑ACCC‑‑T‑‑CTCCCACag < 2:4871523/93‑1 (MQ=37) taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACag < 2:6882380/93‑1 (MQ=37) aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACagg < 2:7087050/93‑1 (MQ=37) aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACaggg < 1:7046871/93‑1 (MQ=37) aGAAACTGCGCGGCTATAGGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCG‑‑‑ACCC‑‑T‑‑CTCCCACaggg < 2:2837807/93‑1 (MQ=37) aaaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGCC‑C‑‑C‑‑T‑‑CTCCCACagggag > 2:3020715/1‑93 (MQ=25) aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACagggaga < 1:1719211/93‑1 (MQ=37) aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACagggaga < 1:392174/93‑1 (MQ=37) aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACagggagag < 2:6011678/93‑1 (MQ=37) cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACagggagagg < 2:3957728/93‑1 (MQ=25) gcgcGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACagggagaggga < 2:2197818/93‑1 (MQ=25) gcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAgggagagggaga < 2:5132755/93‑1 (MQ=25) tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGGGAGGGAGAAAaca > 1:1363061/1‑93 (MQ=21) tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAaca < 2:2326069/93‑1 (MQ=21) tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑‑ACCC‑‑T‑‑CTCCCCCACGGAGAGGGAGGAAaca > 1:4418928/1‑93 (MQ=21) atatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAacac < 2:129043/93‑1 (MQ=21) tatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACt < 1:8809767/93‑1 (MQ=21) atGACAGATATGAATCGTATTGCTGTTGAGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTc < 1:3559358/93‑1 (MQ=18) atGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTc < 1:5194721/93‑1 (MQ=21) tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCC‑‑‑ACCC‑‑C‑‑CTCCCCCCGGGAGGGGGAGAAAAAAcac‑a > 1:4222671/1‑93 (MQ=21) tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGGGAAAACACTC‑a > 2:1518190/1‑93 (MQ=21) tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑a < 1:5630665/93‑1 (MQ=21) tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑a < 1:5724714/93‑1 (MQ=21) gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑aa < 2:4429771/93‑1 (MQ=21) gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑aa < 1:894070/93‑1 (MQ=21) aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑g < 1:6662402/93‑1 (MQ=21) aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑g < 1:4681242/93‑1 (MQ=21) aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑g < 2:5521833/93‑1 (MQ=21) gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggcc < 2:2938767/93‑4 (MQ=21) atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggcct < 2:166480/93‑5 (MQ=21) atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggcct < 1:995486/93‑5 (MQ=21) atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtc < 1:5452262/93‑1 (MQ=18) atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtc < 2:7851172/93‑1 (MQ=18) atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtc < 1:1126468/93‑1 (MQ=18) atGAAACGTATTGCTGTTGCGGATTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtc < 2:1391428/93‑1 (MQ=18) aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 1:119487/93‑1 (MQ=18) aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 2:2448187/93‑1 (MQ=18) aaCGTATTGCTGTTGCGGGTTAAGTGCTCGCTGATGCCCTCGCCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCt < 2:3699910/93‑1 (MQ=18) aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCt < 1:1551275/93‑1 (MQ=18) aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTACCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCt < 1:3372674/93‑1 (MQ=18) aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGCC‑C‑‑C‑‑T‑‑CTCCCACAGGGAGAGCGAGAAAACACTC‑AAGGCCTTCTCCTg < 1:5934435/93‑1 (MQ=18) aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTg < 1:7681497/93‑1 (MQ=18) gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGga < 1:7911160/93‑1 (MQ=18) gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGga < 1:7239352/93‑1 (MQ=18) gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGga < 1:2012298/93‑1 (MQ=18) tATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGgag < 1:6000293/93‑1 (MQ=18) tATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑C‑‑CTCCCCCCGGGAGAGGGGGAAAACACTC‑AAGGCCTTCTCCTGgag > 1:5963737/1‑93 (MQ=18) aTTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGgaga < 2:8477131/93‑1 (MQ=18) ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGaa < 1:7474172/93‑1 (MQ=18) tGCTGTTGCGGGTTAGTTGCGCGCAGATCCCCTCCCCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACCCTC‑AAGGCCTTGTCCTGGAGAAg < 1:6410893/93‑1 (MQ=12) tGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAg < 1:4178416/93‑1 (MQ=18) tGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAg < 2:8357754/93‑1 (MQ=18) tGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑A‑‑C‑‑CCCCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAg < 2:5289923/93‑1 (MQ=21) gCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAgg < 2:7438012/93‑1 (MQ=18) gCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAgg < 1:2617012/93‑1 (MQ=18) tGTTGCGGGTTAAGTGCGCGCTGATGTCCTCCCCCCGCCCC‑‑C‑‑C‑‑CTCCCCCAGGGGGGGGGGGAAAAACATC‑AG‑GCCATGTACTGGAGAAGGcg > 2:8667422/1‑92 (MQ=255) cgtcgCGGGTTGAGCGCGCGCTGGTGCCCTCCCCCGG‑‑‑A‑‑CGGT‑‑CGCCCCCAGGGAGAGGGAGAAAACTCTC‑AAGGCGGTCTCCGGGAGAAGGcc < 2:1261663/89‑1 (MQ=9) gTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCt < 1:7560202/93‑1 (MQ=18) ttGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑‑ACCC‑‑C‑‑CTCCCCCACGGAGGGGGGGAAAAAACTCAAA‑GCCTTCTCCTGGAGAAGGGCtt > 2:7220414/1‑93 (MQ=16) ggTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTAt < 2:1816290/93‑1 (MQ=18) ttAAGTGCGCGCTGATGCCCTCACCCCGCC‑C‑‑C‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 1:3089720/93‑1 (MQ=18) aaGTGCGCGCTGATGGCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCCCGGGGAGAGGGAGAAAACAATC‑AAGGGCCTCTACTGGAGAAGGCCTTGCTATTAGt > 2:3057309/1‑93 (MQ=12) aaGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 1:6191010/93‑1 (MQ=18) aaGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:8775408/93‑1 (MQ=18) aaGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:6126222/93‑1 (MQ=18) aGTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:6328566/93‑1 (MQ=18) gTGCGCGCTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTg < 1:2478700/93‑1 (MQ=18) gcgcgcTGATGCCCTCCCCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 1:4062273/93‑1 (MQ=21) cgcgcTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 1:3721547/93‑1 (MQ=21) gcgcTGATGCCCTCCCCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGt < 1:6760860/93‑1 (MQ=21) gcTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 1:4540303/93‑1 (MQ=21) gcTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 2:792120/93‑1 (MQ=21) gcTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 1:7608668/93‑1 (MQ=21) gcTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 2:4588967/93‑1 (MQ=21) gcTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACCCAAA‑GCCCTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc > 2:7576633/1‑93 (MQ=18) cTGATGCCCTCCCCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 2:577530/93‑1 (MQ=21) cTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 1:2835850/93‑1 (MQ=21) cTGATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 1:689705/93‑1 (MQ=21) gATGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 2:1322408/93‑1 (MQ=25) tGCCCTCGCCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAc < 1:6249037/93‑1 (MQ=25) tGCCCTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAc < 1:4905634/93‑1 (MQ=25) atcccTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGTCCTTGCTATTAGTTGCGGTACAGCAc < 2:7043881/91‑1 (MQ=25) cccTCACCCCGCC‑C‑‑C‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 2:6533556/93‑1 (MQ=25) cccTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 2:495042/93‑1 (MQ=25) cccTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 1:7259317/93‑1 (MQ=25) cTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCCCAGGGGGAGGGGGAAAACAATC‑AAGGCCTTCTCCTGGAGAAGGGCTTGCTATTAGTTGCGGGACAGCACCTTa > 2:2097231/1‑93 (MQ=255) cTCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTa > 1:839994/1‑93 (MQ=37) tCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 1:7374503/93‑1 (MQ=37) tCACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa > 1:8613684/1‑93 (MQ=37) cACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 2:3335861/93‑1 (MQ=37) cACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 2:6702259/93‑1 (MQ=37) cACCCCG‑‑‑ACCC‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat > 2:4599892/1‑93 (MQ=37) || TTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑‑A‑‑C‑‑T‑‑CTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3956999‑3957173 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |