BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,488,696	0	A	G	64.3%	260.6 / inf	326	H135H (CAT→CAC)	fic	Fic
Reads supporting (aligned to +/- strand): ref base A (69/47); new base G (131/78); total (201/125)
Fisher's exact test for biased strand distribution p-value = 6.34e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.82e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 344 total aligned reads displayed.

TCGATACCCTGCCAGCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAACCTTCTTCCTCCAGATC  >  NC_000913/3488604‑3488788

 cGATACCCTGCCAGCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGAt                                                                                             <  1:720014/93‑1 (MQ=255)

     aCCCTGCCAGCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATgcag                                                                                         >  1:1266756/1‑93 (MQ=255)

     aCCCTGCCAGCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATgcag                                                                                         >  1:699269/1‑93 (MQ=255)

      cccTGCCAGCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATgcagc                                                                                        >  2:6477304/1‑93 (MQ=255)

       ccTGCCAGCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATgcagca                                                                                       <  2:2678649/93‑1 (MQ=255)

        cTGCCAGCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCAc                                                                                      >  1:7232856/1‑93 (MQ=255)

         tGCCAGCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACg                                                                                     <  1:8166669/93‑1 (MQ=255)

          gCCAGCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGAGCAGCACGt                                                                                    >  2:6129808/1‑93 (MQ=255)

            cAGCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTg                                                                                  >  2:4190907/1‑93 (MQ=255)

            cAGCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTg                                                                                  <  1:8658709/93‑1 (MQ=255)

            cAGCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCCAAGAAGATCCGCTGTGCCAGACCGCTTCCCACCCGGAAGGGATGCAGCACGTTg                                                                                  >  2:3146708/1‑93 (MQ=255)

              gCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGAt                                                                                <  2:4711923/93‑1 (MQ=255)

              gCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGAt                                                                                >  2:5613753/1‑93 (MQ=255)

              gCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGAt                                                                                >  1:3689643/1‑93 (MQ=255)

              gCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGAt                                                                                <  2:6750753/93‑1 (MQ=255)

              gCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGAt                                                                                >  1:2197071/1‑93 (MQ=255)

               cTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGAtt                                                                               <  1:7764272/93‑1 (MQ=255)

                tCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGAttt                                                                              >  1:4560997/1‑93 (MQ=255)

                tCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGAttt                                                                              >  1:5272180/1‑93 (MQ=255)

                tCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGAttt                                                                              >  2:7531132/1‑93 (MQ=255)

                 cAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGCCCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTc                                                                             <  2:1575352/93‑1 (MQ=255)

                 cAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTc                                                                             >  1:8817920/1‑93 (MQ=255)

                 cAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTc                                                                             >  1:7914397/1‑93 (MQ=255)

                 cAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTc                                                                             >  2:1224699/1‑93 (MQ=255)

                   gTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTcac                                                                           >  2:588502/1‑93 (MQ=255)

                    ttGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTcaca                                                                          >  2:1263994/1‑93 (MQ=255)

                     tGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACaa                                                                         >  1:7573260/1‑93 (MQ=255)

                      gATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAAt                                                                        >  1:3131134/1‑93 (MQ=255)

                      gATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAAt                                                                        >  1:625128/1‑93 (MQ=255)

                       atatCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATa                                                                       <  1:3893981/93‑1 (MQ=255)

                       atatCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATa                                                                       <  1:6895895/93‑1 (MQ=255)

                        tatCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAg                                                                      >  1:579150/1‑93 (MQ=255)

                          tCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTa                                                                    >  2:397325/1‑93 (MQ=255)

                           ccGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTaa                                                                   <  2:4888497/93‑1 (MQ=255)

                             ggCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATg                                                                 <  2:212190/93‑1 (MQ=255)

                              gCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATgc                                                                >  2:758929/1‑93 (MQ=255)

                              gCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATgc                                                                >  2:3404239/1‑93 (MQ=255)

                              gCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATgc                                                                <  2:8000756/93‑1 (MQ=255)

                              gCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATgc                                                                <  2:3760093/93‑1 (MQ=255)

                               cATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATgcg                                                               >  1:6788928/1‑93 (MQ=255)

                               cATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATgcg                                                               <  2:2496790/93‑1 (MQ=255)

                                aTGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGAGCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATgcgc                                                              <  2:5222461/93‑1 (MQ=255)

                                aTGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATgcgc                                                              >  2:1906858/1‑93 (MQ=255)

                                 tGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGcc                                                             >  2:2320153/1‑93 (MQ=255)

                                  gAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCa                                                            <  1:6581627/93‑1 (MQ=255)

                                  gAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCa                                                            <  1:8272639/93‑1 (MQ=255)

                                    aTCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGc                                                          <  1:7947857/93‑1 (MQ=255)

                                    aTCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGc                                                          >  1:3011623/1‑93 (MQ=255)

                                    aTCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGc                                                          <  2:7399909/93‑1 (MQ=255)

                                     tCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGcc                                                         >  2:2212019/1‑93 (MQ=255)

                                     tCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGcc                                                         >  2:5038229/1‑93 (MQ=255)

                                        ccAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCt                                                      >  1:2372837/1‑93 (MQ=255)

                                        ccAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCt                                                      <  2:6911259/93‑1 (MQ=255)

                                           gTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTcga                                                   >  1:6166681/1‑93 (MQ=255)

                                              gCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAATAATGCGCCAGCCGCTcgacga                                                >  1:1545624/1‑93 (MQ=255)

                                               cTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGaa                                               <  2:3045918/93‑1 (MQ=255)

                                                 cGAAGAAGATCCGCTGTGCCAGACCACTTCCCCCCCGGAAGGGGGGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACt                                             <  2:6591605/93‑1 (MQ=255)

                                                   aagaagATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTc                                           >  1:2059040/1‑93 (MQ=255)

                                                    agaagaTCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACTAACTTCg                                          >  1:4173627/1‑93 (MQ=255)

                                                    agaagaTCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCg                                          >  1:4021201/1‑93 (MQ=255)

                                                     gaagaTCCGCTGTGCCAGACCCCTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGc                                         <  1:3346138/93‑1 (MQ=255)

                                                       agaTCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCtt                                       >  2:3532057/1‑93 (MQ=255)

                                                       agaTCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCtt                                       <  2:7215756/93‑1 (MQ=255)

                                                        gaTCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCttt                                      >  2:8593782/1‑93 (MQ=255)

                                                        gaTCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCttt                                      >  1:2427014/1‑93 (MQ=255)

                                                          tCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTtct                                    >  2:1735361/1‑93 (MQ=255)

                                                           ccGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTtctc                                   >  1:895511/1‑93 (MQ=255)

                                                           ccGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTtctc                                   >  2:8290487/1‑93 (MQ=255)

                                                           ccGCTGTGCCAGACCAATTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTtctc                                   >  1:6400251/1‑93 (MQ=255)

                                                            cGCTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTcc                                  <  1:5079722/93‑1 (MQ=255)

                                                              cTGTGCCAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAg                                >  1:6060354/1‑93 (MQ=255)

                                                                 tgCCAGACCACTTCCCACCCGGAAGGGGTGCAGCAGGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGcc                             <  1:8044195/93‑1 (MQ=255)

                                                                  gCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCa                            >  1:1922327/1‑93 (MQ=255)

                                                                   ccAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCaa                           >  1:1780475/1‑93 (MQ=255)

                                                                   ccAGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCaa                           >  2:6557918/1‑93 (MQ=255)

                                                                    cAGACCCCTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAAc                          <  1:544738/93‑1 (MQ=255)

                                                                    cAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAAc                          >  1:7461220/1‑93 (MQ=255)

                                                                     aGACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAAcc                         >  2:8101150/1‑93 (MQ=255)

                                                                     aGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAAcc                         >  1:2659428/1‑93 (MQ=255)

                                                                      gACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCa                        >  1:6666115/1‑93 (MQ=255)

                                                                      gACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCa                        >  2:7849086/1‑93 (MQ=255)

                                                                      gACCACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCa                        >  2:2983562/1‑93 (MQ=255)

                                                                         cACTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGAt                     <  1:169534/93‑1 (MQ=255)

                                                                         cACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGAt                     >  2:2866036/1‑93 (MQ=255)

                                                                           cTTCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATaa                   <  1:8306019/93‑1 (MQ=255)

                                                                            ttCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAAc                  >  1:1109888/1‑93 (MQ=255)

                                                                            ttCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAAc                  >  1:4517545/1‑93 (MQ=255)

                                                                             tCCCACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAAcc                 <  1:1353416/93‑1 (MQ=255)

                                                                              tccACCCGGAAGGGTTGCAGCCCTTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAACct                <  2:8506223/92‑1 (MQ=255)

                                                                              cccACCCGGAAGGGGTACAGCACTTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAACct                <  1:2752687/93‑1 (MQ=255)

                                                                              cccACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAACct                >  2:6185857/1‑93 (MQ=255)

                                                                               ccccccGGAAGGGGTGCAGCACTTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAACctt               <  2:6348379/90‑1 (MQ=255)

                                                                               ccACCCGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAACctt               <  2:5720067/93‑1 (MQ=255)

                                                                               caaCCGGGAAGGGGTGGAGCCCTTTCATTTCACAATAGTAATGCACCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAACctt               <  1:1839478/91‑1 (MQ=255)

                                                                                    cGGAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAACCTTCTtcc          <  2:7316134/93‑1 (MQ=255)

                                                                                     ggAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAACCTTCTtcct         >  1:6487574/1‑93 (MQ=255)

                                                                                      gAAGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGACCTTCGCTTTCTCCAGGCCAACCAGATAACCTTCTtcctc        <  2:7112188/93‑1 (MQ=255)

                                                                                       aaGGGGTGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAACCTTCTtcctcc       >  1:2825738/1‑93 (MQ=255)

                                                                                       aaGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAACCTTCTtcctcc       >  1:1045676/1‑93 (MQ=255)

                                                                                         gggATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAACCTTCTTCCTCCAg     >  2:1986801/1‑93 (MQ=255)

TCGATACCCTGCCAGCTCAGTTGATATCCGGCATGAATCGCCAGTTGCTCGAAGAAGATCCGCTGTGCCAGACCACTTCCCACCCGGAAGGGATGCAGCACGTTGATTTCACAATAGTAATGCGCCAGCCGCTCGACGAACTTCGCTTTCTCCAGGCCAACCAGATAACCTTCTTCCTCCAGATC  >  NC_000913/3488604‑3488788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`