Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,232,5090CT64.5% 324.5 / 260.2 288A478T (GCC→ACC) nhaBNa+/H+ antiporter, pH independent
Reads supporting (aligned to +/- strand):  ref base C (49/53);  new base T (98/87);  total (148/140)
Fisher's exact test for biased strand distribution p-value = 4.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.63e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 307 total aligned reads displayed.

GCCCATTTGCATAAACCATTCGGTTACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGACCGTTCGGCGTA  >  NC_000913/1232417‑1232600
                                                                                            |                                                                                           
gCCCATTTGCATAAACCATTCGGTTACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGc                                                                                             <  2:8103105/93‑1 (MQ=255)
  ccATTTGCATAAACCATTCGGTTACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACTAGTGTCAGGACGAGGGTGTAAGGCAGGGTCa                                                                                           >  1:6250966/1‑93 (MQ=255)
  ccATTTGCATAAACCATTCGGTTACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCa                                                                                           >  1:948123/1‑93 (MQ=255)
  ccATTTGCATAAACCATTCGGTTACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCa                                                                                           <  2:2828222/93‑1 (MQ=255)
   cATTTGCATAAACCATTCGGTTACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCAt                                                                                          <  1:7980948/93‑1 (MQ=255)
     tttGCATAAACCATTCGGTTACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATcc                                                                                        <  2:3502157/93‑1 (MQ=255)
         cATAAACCATTCGGTTACAGGGTCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCacac                                                                                    <  1:7093530/93‑1 (MQ=255)
          aTAAACCATTCGGTTACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACAcc                                                                                   <  1:4510835/93‑1 (MQ=255)
           tAAACCATTCGGTTACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCa                                                                                  <  1:5163897/93‑1 (MQ=255)
            aaaCCATTCGGTTACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCAt                                                                                 >  2:5645777/1‑93 (MQ=255)
            aaaCCATTCGGTTACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCAt                                                                                 <  2:4197823/93‑1 (MQ=255)
              aCCATTCGGTTACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGc                                                                               >  2:8686026/1‑93 (MQ=255)
               ccATTCGGTTACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCg                                                                              >  2:1368241/1‑93 (MQ=255)
               ccATTCGGTTACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCg                                                                              >  1:5726597/1‑93 (MQ=255)
                  ttCGGTTACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGcc                                                                           >  1:4255347/1‑93 (MQ=255)
                      gTTACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATaa                                                                       <  2:5531026/93‑1 (MQ=255)
                        tACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAaga                                                                     <  2:694828/93‑1 (MQ=255)
                        tACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAaga                                                                     <  2:5809972/93‑1 (MQ=255)
                        tACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAaga                                                                     >  2:2107937/1‑93 (MQ=255)
                         aCAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAagag                                                                    >  1:7389378/1‑93 (MQ=255)
                         aCAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAagag                                                                    >  2:8761800/1‑93 (MQ=255)
                         aCAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAagag                                                                    <  1:1384631/93‑1 (MQ=255)
                          cAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAagaga                                                                   <  2:7604162/93‑1 (MQ=255)
                          cAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAagaga                                                                   <  2:2958813/93‑1 (MQ=255)
                           aGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAagagag                                                                  <  1:5227622/93‑1 (MQ=255)
                            ggggCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAgg                                                                 <  2:5938039/93‑1 (MQ=255)
                            ggggCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAgg                                                                 >  2:8635686/1‑93 (MQ=255)
                             gggCAAGCGTAAACTCGGCGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGc                                                                <  1:3051449/93‑1 (MQ=255)
                             gggCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGc                                                                >  1:389248/1‑93 (MQ=255)
                              ggCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCg                                                               >  2:7206452/1‑93 (MQ=255)
                                 aaGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAAt                                                            <  1:2978865/93‑1 (MQ=255)
                                 aaGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAAt                                                            <  1:5666351/93‑1 (MQ=255)
                                 aaGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAAt                                                            <  1:5929198/93‑1 (MQ=255)
                                  aGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATc                                                           >  1:8067493/1‑93 (MQ=255)
                                    cGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCaa                                                         <  1:5629970/93‑1 (MQ=255)
                                    cGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCaa                                                         <  1:1560515/93‑1 (MQ=255)
                                      tAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATg                                                       <  2:6149276/93‑1 (MQ=255)
                                       aaaCTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATgg                                                      >  2:401435/1‑93 (MQ=255)
                                       aaaCTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATgg                                                      <  1:4351328/93‑1 (MQ=255)
                                       aaaCTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATgg                                                      <  1:8504010/93‑1 (MQ=255)
                                       aaaCTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATgg                                                      <  2:3281851/93‑1 (MQ=255)
                                       aaaCTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGGGTAAGGCCGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATgg                                                      >  2:3752380/1‑93 (MQ=255)
                                        aaCTCGCCGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGgc                                                     <  2:236905/93‑1 (MQ=255)
                                        aaCTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGgc                                                     >  2:7373607/1‑93 (MQ=255)
                                        aaCTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGgc                                                     <  2:5116901/93‑1 (MQ=255)
                                        aaCTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGgc                                                     >  2:1522973/1‑93 (MQ=255)
                                          cTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGgcgc                                                   <  1:7622036/93‑1 (MQ=255)
                                            cGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGa                                                 >  1:8216261/1‑93 (MQ=255)
                                             gACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAg                                                <  1:2063508/93‑1 (MQ=255)
                                             gACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAg                                                <  1:4148975/93‑1 (MQ=255)
                                              aCGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGt                                               <  1:6051770/93‑1 (MQ=255)
                                               cGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTg                                              >  1:2454035/1‑93 (MQ=255)
                                                gCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATTGCGCGAGTGc                                             >  2:3659916/1‑93 (MQ=255)
                                                gCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGc                                             <  2:7775102/93‑1 (MQ=255)
                                                 cAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCa                                            >  2:887928/1‑93 (MQ=255)
                                                  agagCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCag                                           >  1:3574270/1‑93 (MQ=255)
                                                   gagCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCaga                                          <  2:250700/93‑1 (MQ=255)
                                                   gagCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAAACAATGGCGCGAGTGCaga                                          <  2:8556300/93‑1 (MQ=255)
                                                     gCAAGCGGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAgg                                        <  2:6069788/93‑1 (MQ=255)
                                                     gCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAgg                                        <  2:3920105/93‑1 (MQ=255)
                                                      cAACCCGACGAGTGTCAGGACGACGTTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGt                                       <  2:4833969/93‑1 (MQ=255)
                                                       aaGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTc                                      >  1:3723534/1‑93 (MQ=255)
                                                        aGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTca                                     >  1:6512814/1‑93 (MQ=255)
                                                         gCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTcag                                    <  2:5187627/93‑1 (MQ=255)
                                                             acgaGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGcagg                                >  2:1751166/1‑93 (MQ=255)
                                                             acgaGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGcagg                                >  1:7758222/1‑93 (MQ=255)
                                                              cgaGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGcagga                               <  2:1082982/93‑1 (MQ=255)
                                                               gaGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGcaggaa                              <  2:6647318/93‑1 (MQ=255)
                                                               gaGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGcaggaa                              <  1:6138446/93‑1 (MQ=255)
                                                               gaGTGTCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGcaggaa                              >  1:164263/1‑93 (MQ=255)
                                                               gaGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGcaggaa                              <  1:880066/93‑1 (MQ=255)
                                                               gaGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGcaggaa                              >  2:820865/1‑93 (MQ=255)
                                                                aGTGTCAGGACGAGGGTGTAAGGCAGGGTCGTCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGcaggaac                             >  1:100079/1‑93 (MQ=255)
                                                                 gtgtCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGcaggaaca                            <  2:5416010/93‑1 (MQ=255)
                                                                   gtCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGcaggaacagg                          <  2:1621614/93‑1 (MQ=255)
                                                                   gtCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGcaggaacagg                          <  1:753275/93‑1 (MQ=255)
                                                                   gtCAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGcaggaacagg                          >  1:4968121/1‑93 (MQ=255)
                                                                     cAGGACGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGcaggaacaggaa                        <  1:1183500/93‑1 (MQ=255)
                                                                         aCGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCa                    >  1:7230387/1‑93 (MQ=255)
                                                                          cGAGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAg                   >  2:4733626/1‑93 (MQ=255)
                                                                            aGGGTGTAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGcc                 >  1:3427559/1‑93 (MQ=255)
                                                                             gggTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCt                <  2:4363310/93‑1 (MQ=255)
                                                                                ggtAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGAc             <  1:6999942/92‑1 (MQ=255)
                                                                                 gtAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGAcc            >  1:2873766/1‑93 (MQ=255)
                                                                                 gtAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGAcc            <  2:7014221/93‑1 (MQ=255)
                                                                                  tAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGACCg           >  1:2804464/1‑93 (MQ=255)
                                                                                  tAAGGCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGACCg           >  1:6375235/1‑93 (MQ=255)
                                                                                   aaGTCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGACCGt          <  1:6780642/93‑1 (MQ=255)
                                                                                   aaGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGACCGt          >  1:2713615/1‑93 (MQ=255)
                                                                                   aaGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGACCGt          >  2:6450140/1‑93 (MQ=255)
                                                                                     ggCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGACCGTTc        <  1:1848758/93‑1 (MQ=255)
                                                                                     ggCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGACCGTTc        <  1:1938524/93‑1 (MQ=255)
                                                                                     ggCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGACCGTTc        <  1:8133620/93‑1 (MQ=255)
                                                                                     ggCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGACCGTTc        <  2:3206936/93‑1 (MQ=255)
                                                                                      gCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGACCGTTCg       >  2:2683764/1‑93 (MQ=255)
                                                                                      gCAGGGTCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGACCGTTCg       <  2:4536871/93‑1 (MQ=255)
                                                                                      gCAGGGGCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGACCGTTCg       <  1:8560354/93‑1 (MQ=255)
                                                                                      gCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCATGCACGTTCg       >  1:7733867/1‑93 (MQ=255)
                                                                                        aGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGACCGTTCGGc     >  1:2919127/1‑93 (MQ=255)
                                                                                        aGGGCCAACCACACCATGCCGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGACCGTTCGGc     <  1:6696929/93‑1 (MQ=255)
                                                                                            |                                                                                           
GCCCATTTGCATAAACCATTCGGTTACAGGGGCAAGCGTAAACTCGACGCAGAGCAAGCCGACGAGTGTCAGGACGAGGGTGTAAGGCAGGGCCATCCACACCATGCGGCCATAAGAGAGGCGAATCAATGGCGCGAGTGCAGAGGTCAGCAGGAACAGGAACGCAGCCTGACCGTTCGGCGTA  >  NC_000913/1232417‑1232600

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑