BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,730,968	T→C	S1286S (AGT→AGC)	lhr →	Lhr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,730,968	0	T	C	98.6%	703.3 / ‑2.2	212	S1286S (AGT→AGC)	lhr	Lhr
Reads supporting (aligned to +/- strand): ref base T (2/1); new base C (116/92); total (119/93)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

Only 100 of 224 total aligned reads displayed.

TGCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGTTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTT  >  NC_000913/1730878‑1731056

tGCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTc                                                                                        >  1:4149083/1‑93 (MQ=255)

 gCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTcc                                                                                       >  1:3054196/1‑93 (MQ=255)

   ccTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCaa                                                                                     >  1:5594039/1‑93 (MQ=255)

   ccTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCaa                                                                                     >  2:6147082/1‑93 (MQ=255)

   ccTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCaa                                                                                     <  1:6027837/93‑1 (MQ=255)

   ccTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCaa                                                                                     <  2:2652174/93‑1 (MQ=255)

   ccTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCaa                                                                                     >  2:1662247/1‑93 (MQ=255)

    cTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAac                                                                                    >  2:3914550/1‑93 (MQ=255)

    cTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAac                                                                                    <  1:687064/93‑1 (MQ=255)

    cTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAac                                                                                    <  1:8128622/93‑1 (MQ=255)

     tGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAacg                                                                                   >  1:8398962/1‑93 (MQ=255)

        aaGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAacgcac                                                                                <  1:6634975/93‑1 (MQ=255)

        aaGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAacgcac                                                                                <  1:8020802/93‑1 (MQ=255)

         agagGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAacgcacg                                                                               <  2:7372275/93‑1 (MQ=255)

         agagGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAacgcacg                                                                               >  1:2419687/1‑93 (MQ=255)

          gagGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAacgcacgc                                                                              >  1:2616227/1‑93 (MQ=255)

          gagGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAacgcacgc                                                                              >  2:3126079/1‑93 (MQ=255)

          gagGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAacgcacgc                                                                              >  2:4910382/1‑93 (MQ=255)

            ggCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGTTCCAACgcacgcac                                                                            >  1:8759781/1‑93 (MQ=255)

             gCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCAcc                                                                           <  2:2668118/93‑1 (MQ=255)

               gTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTc                                                                         >  1:6498681/1‑93 (MQ=255)

               gTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTc                                                                         >  1:1240090/1‑93 (MQ=255)

                 tATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCaa                                                                       >  1:5380916/1‑93 (MQ=255)

                 tATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCaa                                                                       >  2:3247227/1‑93 (MQ=255)

                  ttGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAAc                                                                      <  2:6727322/92‑1 (MQ=255)

                  aTGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAAc                                                                      <  1:3580037/93‑1 (MQ=255)

                    gggCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTc                                                                    <  2:4058369/93‑1 (MQ=255)

                    gggCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTc                                                                    <  2:6923799/93‑1 (MQ=255)

                     ggCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTcg                                                                   <  1:2261791/93‑1 (MQ=255)

                       cgcTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTcgcc                                                                 >  2:7207105/1‑93 (MQ=255)

                       cgcTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTcgcc                                                                 <  2:3953577/93‑1 (MQ=255)

                         cTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCACCTcgccgc                                                               >  1:7222687/1‑93 (MQ=255)

                         cTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTcgccgc                                                               <  2:1811143/93‑1 (MQ=255)

                           ggTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAg                                                             >  2:1955870/1‑93 (MQ=255)

                            gTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGt                                                            <  1:4210299/93‑1 (MQ=255)

                            gTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGt                                                            <  1:2099602/93‑1 (MQ=255)

                            gTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGt                                                            <  1:470341/93‑1 (MQ=255)

                            gTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGt                                                            >  2:5473289/1‑93 (MQ=255)

                               tGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTGCGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCAc                                                         <  2:6988290/93‑1 (MQ=255)

                                ggCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCCACGCACGCACCTCAACTCGCCGCAGTCAcc                                                        >  1:7313106/1‑93 (MQ=255)

                                 gCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCg                                                       >  2:3754209/1‑93 (MQ=255)

                                   aaGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCggg                                                     >  2:4190088/1‑93 (MQ=255)

                                   aaGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCggg                                                     >  2:4448773/1‑93 (MQ=255)

                                   aaGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCggg                                                     >  1:1526995/1‑93 (MQ=255)

                                   aaGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCggg                                                     >  1:5126875/1‑93 (MQ=255)

                                   aaGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCggg                                                     >  2:7075669/1‑93 (MQ=255)

                                    aGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGc                                                    >  1:1726462/1‑93 (MQ=255)

                                     ggCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCt                                                   >  2:2060170/1‑93 (MQ=255)

                                     ggCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCt                                                   <  1:4597657/93‑1 (MQ=255)

                                     ggCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCt                                                   <  1:4924807/93‑1 (MQ=255)

                                        gTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCtcgt                                                >  1:3841462/1‑93 (MQ=255)

                                        gTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCtcgt                                                >  2:5560413/1‑93 (MQ=255)

                                         tcatcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCtcgtc                                               <  2:3348889/93‑1 (MQ=255)

                                         tcatcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCtcgtc                                               >  1:4061232/1‑93 (MQ=255)

                                         tcatcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCtcgtc                                               >  2:4604373/1‑93 (MQ=255)

                                         tcatcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCtcgtc                                               >  2:4738076/1‑93 (MQ=255)

                                           atcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCCGTCATCGCGCtcgtcgg                                             >  2:5977237/1‑92 (MQ=255)

                                           atcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTcgtcgt                                             >  1:5767086/1‑93 (MQ=255)

                                            tcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTg                                            <  1:4783110/93‑1 (MQ=255)

                                            tcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTg                                            <  2:1478978/93‑1 (MQ=255)

                                            tcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTg                                            >  1:3528812/1‑93 (MQ=255)

                                              cccAGCGACATTTGGGCCCCGTTACGCGCCCTCCCCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGa                                          <  2:5813164/92‑1 (MQ=255)

                                               ccAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGAc                                         >  1:1937233/1‑93 (MQ=255)

                                                 aGCGACATTTTGGCACCGTTACGCGCCCTCGCCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGt                                       <  1:52533/93‑1 (MQ=255)

                                                 aGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGt                                       <  2:4346005/93‑1 (MQ=255)

                                                 aGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGt                                       >  2:3567758/1‑93 (MQ=255)

                                                  gCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCATGGACggc                                      >  2:7432580/1‑91 (MQ=255)

                                                  acGACATTGAGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTc                                      <  2:2277245/92‑1 (MQ=255)

                                                   cGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTcc                                     <  1:7077496/93‑1 (MQ=255)

                                                    gACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCt                                    <  1:8351497/93‑1 (MQ=255)

                                                    gACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCt                                    >  2:8812536/1‑93 (MQ=255)

                                                    gACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCt                                    >  2:1404715/1‑93 (MQ=255)

                                                       aTTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGtt                                 >  1:2876117/1‑92 (MQ=255)

                                                        tttGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCt                                >  1:5104743/1‑93 (MQ=255)

                                                          tGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTAt                              >  2:6114662/1‑93 (MQ=255)

                                                            ggCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATgc                            <  1:6300510/93‑1 (MQ=255)

                                                            ggCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATgc                            <  2:2450851/93‑1 (MQ=255)

                                                             gCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATgcg                           >  1:8500474/1‑93 (MQ=255)

                                                               aCCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCa                         >  1:1293066/1‑93 (MQ=255)

                                                               aCCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCa                         >  2:759216/1‑93 (MQ=255)

                                                               aCCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCa                         >  2:80002/1‑93 (MQ=255)

                                                               aCCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCa                         <  2:8244814/93‑1 (MQ=255)

                                                                 cGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAAc                       >  1:2173448/1‑93 (MQ=255)

                                                                 cGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAAc                       <  1:7463741/93‑1 (MQ=255)

                                                                  gTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAAcc                      >  1:3367690/1‑93 (MQ=255)

                                                                  gTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAAcc                      >  1:2580245/1‑93 (MQ=255)

                                                                     aCGCGCCCTCACCCGCAGCAGTTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGGGGACGTCCTGTCTATGCGCAACCCgc                   >  1:6077978/1‑92 (MQ=255)

                                                                     aCGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGt                   <  2:1301427/93‑1 (MQ=255)

                                                                      cgcgCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGTACGTCCTGTCTATGCGCAACCCGtc                  >  2:510102/1‑93 (MQ=255)

                                                                       gcgcCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGtct                 >  2:7568648/1‑93 (MQ=255)

                                                                       ccgcCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGtct                 <  1:1022556/92‑1 (MQ=255)

                                                                         gcCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcg               >  1:6946389/1‑93 (MQ=255)

                                                                          cccTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcgc              >  2:3778521/1‑93 (MQ=255)

                                                                          cccTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcgc              >  2:5722317/1‑93 (MQ=255)

                                                                          cccTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcgc              <  1:5984556/93‑1 (MQ=255)

                                                                            cTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcgccg            <  1:6755769/93‑1 (MQ=255)

                                                                             tCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcgccgc           >  1:8236455/1‑93 (MQ=255)

                                                                                cccGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCggg        <  2:410571/93‑1 (MQ=255)

                                                                                   gcagcaGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTAt     >  2:1248297/1‑93 (MQ=255)

                                                                                      gcagCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCtt  >  2:89865/1‑93 (MQ=255)

TGCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGTTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTT  >  NC_000913/1730878‑1731056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`